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Viral host-range evolvability changes in response to fluctuating selection

https://doi.org/10.1101/771998

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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R. W. Hendrix, J. W. Roberts, F. W. Stahl and R. A. Weisberg, Lambda II (Monograph 13). 694 S., 79 Abb. 24 Tab. Cold Spring Harbor 1983. Cold Spring Harbor Laboratory. $ 93.60. ISBN 0‐87969‐150‐6

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Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq

inferredcites →https://doi.org/10.1016/0042-6822(56)90012-5openalex-snapshot

Mutation to extended host range and the occurrence of phenotypic mixing in the temperate coliphage lambda

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Quantifying Fitness and Gene Stability in Microorganisms

inferredcites →https://doi.org/10.1016/j.virol.2015.02.010openalex-snapshot

Bacteriophage lambda: Early pioneer and still relevant

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Book review

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Biophysical Characterization Platform Informs Protein Scaffold Evolvability

inferredcites →https://doi.org/10.1038/335351a0openalex-snapshot

Evolution of a bacteria/plasmid association

inferredcites →https://doi.org/10.1038/35020564openalex-snapshot

Evolvability of an RNA virus is determined by its mutational neighbourhood

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The effect of genetic background on the fitness of diazinon resistance genotypes of the Australian sheep blowfly, Lucilia cuprina

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Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus

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Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection

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Loss and recovery of wings in stick insects

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Programming cells by multiplex genome engineering and accelerated evolution

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Biophysical mechanisms that maintain biodiversity through trade-offs

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Reverse evolution and evolutionary memory

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Genome-scale promoter engineering by coselection MAGE

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Mechanisms of viral emergence

inferredcites →https://doi.org/10.1073/pnas.0404656101openalex-snapshot

Evolvability is a selectable trait

inferredcites →https://doi.org/10.1073/pnas.0510098103openalex-snapshot

Protein stability promotes evolvability

inferredcites →https://doi.org/10.1073/pnas.0611630104openalex-snapshot

Varying environments can speed up evolution

inferredcites →https://doi.org/10.1073/pnas.0706695104openalex-snapshot

An inducible lambdoid prophage encoding cytolethal distending toxin (Cdt-I) and a type III effector protein in enteropathogenic Escherichia coli

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Arbovirus evolution in vivo is constrained by host alternation

inferredcites →https://doi.org/10.1073/pnas.0803151105openalex-snapshot

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

inferredcites →https://doi.org/10.1073/pnas.120163297openalex-snapshot

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides

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Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

inferredcites →https://doi.org/10.1073/pnas.95.7.3949openalex-snapshot

Virulence of antibiotic-resistant Salmonella typhimurium

inferredcites →https://doi.org/10.1093/genetics/154.1.27openalex-snapshot

Evolutionary Reversals During Viral Adaptation to Alternating Hosts

inferredcites →https://doi.org/10.1093/genetics/154.3.985openalex-snapshot

Compensatory Mutations, Antibiotic Resistance and the Population Genetics of Adaptive Evolution in Bacteria

inferredcites →https://doi.org/10.1093/genetics/156.4.1465openalex-snapshot

Cost of Host Radiation in an RNA Virus

inferredcites →https://doi.org/10.1093/genetics/162.2.557openalex-snapshot

Fitness Evolution and the Rise of Mutator Alleles in Experimental Escherichia coli Populations

inferredcites →https://doi.org/10.1093/genetics/164.3.843openalex-snapshot

The Evolution of Mutator Genes in Bacterial Populations: The Roles of Environmental Change and Timing

inferredcites →https://doi.org/10.1093/molbev/msq024openalex-snapshot

Escherichia coli rpoB Mutants Have Increased Evolvability in Proportion to Their Fitness Defects

inferredcites →https://doi.org/10.1093/nar/22.25.5765openalex-snapshot

Rapid confirmation of single copy lambda prophage integration by PCR

inferredcites →https://doi.org/10.1098/rspb.1997.0178openalex-snapshot

Adaptation to the fitness costs of antibiotic resistance inEscherichia coli

inferredcites →https://doi.org/10.1098/rspb.2001.1902openalex-snapshot

Mutator dynamics in fluctuating environments

inferredcites →https://doi.org/10.1098/rspb.2016.1528openalex-snapshot

Host coevolution alters the adaptive landscape of a virus

inferredcites →https://doi.org/10.1098/rspb.2017.0516openalex-snapshot

Evolvability meets biogeography: evolutionary potential decreases at high and low environmental favourability

inferredcites →https://doi.org/10.1098/rstb.2001.0997openalex-snapshot

Emergence of influenza A viruses

inferredcites →https://doi.org/10.1098/rstb.2010.0031openalex-snapshot

The evolution of HIV-1 and the origin of AIDS

inferredcites →https://doi.org/10.1111/1574-6976.12008openalex-snapshot

Mechanisms and selection of evolvability: experimental evidence

inferredcites →https://doi.org/10.1111/evo.13586openalex-snapshot

Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature

inferredcites →https://doi.org/10.1111/gcb.14764openalex-snapshot

Positive genetic associations among fitness traits support evolvability of a reef‐building coral under multiple stressors

inferredcites →https://doi.org/10.1111/j.1420-9101.2008.01663.xopenalex-snapshot

The evolutionary dynamics of evolvability in a gene network model

inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05521.xopenalex-snapshot

COMPETITION BETWEEN HIGH AND LOW MUTATING STRAINS OFESCHERICHIA COLI

inferredcites →https://doi.org/10.1111/j.1558-5646.1988.tb04150.xopenalex-snapshot

EXPERIMENTAL STUDIES OF PLEIOTROPY AND EPISTASIS INESCHERICHIA COLI. II. COMPENSATION FOR MALADAPTIVE EFFECTS ASSOCIATED WITH RESISTANCE TO VIRUS T4

inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00303.xopenalex-snapshot

EVOLUTION OF EVOLVABILITY IN A DEVELOPMENTAL MODEL

inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01049.xopenalex-snapshot

PARALLEL CHANGES IN HOST RESISTANCE TO VIRAL INFECTION DURING 45,000 GENERATIONS OF RELAXED SELECTION

inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01051.xopenalex-snapshot

ROLE OF EVOLVED HOST BREADTH IN THE INITIAL EMERGENCE OF AN RNA VIRUS

inferredcites →https://doi.org/10.1111/nyas.13304openalex-snapshot

Evolutionary ecology of virus emergence

inferredcites →https://doi.org/10.1126/science.1123539openalex-snapshot

Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins

inferredcites →https://doi.org/10.1126/science.1198914openalex-snapshot

Second-Order Selection for Evolvability in a Large Escherichia coli Population

inferredcites →https://doi.org/10.1126/science.1203799openalex-snapshot

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

inferredcites →https://doi.org/10.1126/science.1203801openalex-snapshot

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

inferredcites →https://doi.org/10.1126/science.1214449openalex-snapshot

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

inferredcites →https://doi.org/10.1126/science.1243357openalex-snapshot

Long-Term Dynamics of Adaptation in Asexual Populations

inferredcites →https://doi.org/10.1126/science.1250939openalex-snapshot

Global epistasis makes adaptation predictable despite sequence-level stochasticity

inferredcites →https://doi.org/10.1126/science.7809610openalex-snapshot

Experimental Tests of the Roles of Adaptation, Chance, and History in Evolution

inferredcites →https://doi.org/10.1126/science.aai8446openalex-snapshot

Ecological speciation of bacteriophage lambda in allopatry and sympatry

inferredcites →https://doi.org/10.1126/science.aar1954openalex-snapshot

Destabilizing mutations encode nongenetic variation that drives evolutionary innovation

inferredcites →https://doi.org/10.1128/jb.179.2.417-422.1997openalex-snapshot

Proliferation of mutators in A cell population

inferredcites →https://doi.org/10.1128/jb.185.3.779-787.2003openalex-snapshot

Sizing the Holin Lesion with an Endolysin-β-Galactosidase Fusion

inferredcites →https://doi.org/10.1128/jvi.01385-18openalex-snapshot

Existing Host Range Mutations Constrain Further Emergence of RNA Viruses

inferredcites →https://doi.org/10.1371/journal.pbio.1002023openalex-snapshot

Coevolution Drives the Emergence of Complex Traits and Promotes Evolvability

inferredcites →https://doi.org/10.1371/journal.pcbi.1000112openalex-snapshot

Evolution of Evolvability in Gene Regulatory Networks

inferredcites →https://doi.org/10.1371/journal.pcbi.1006445openalex-snapshot

Fluctuating environments select for short-term phenotypic variation leading to long-term exploration

inferredcites →https://doi.org/10.1371/journal.ppat.1004395openalex-snapshot

The Evolution and Genetics of Virus Host Shifts

inferredcites →https://doi.org/10.1534/genetics.108.090100openalex-snapshot

Bacteriophage Adsorption Rate and Optimal Lysis Time

inferredcites →https://doi.org/10.1534/genetics.109.112458openalex-snapshot

Fitness Epistasis and Constraints on Adaptation in a Human Immunodeficiency Virus Type 1 Protein Region

inferredcites →https://doi.org/10.2174/1874357900903010001openalex-snapshot

The Evolution of Viruses in Multi-Host Fitness Landscapes

inferredcites →https://doi.org/10.2307/2409029openalex-snapshot

Experimental Studies of Pleiotropy and Epistasis in Escherichia coli. II. Compensation for Maldaptive Effects Associated with Resistance to Virus T4

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1098/rspb.2020.1230openalex-snapshot

The problem of mediocre generalists: population genetics and eco-evolutionary perspectives on host breadth evolution in pathogens

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