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Existing Host Range Mutations Constrain Further Emergence of RNA Viruses
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Antigenic diversification is correlated with increased thermostability in a mammalian virus
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Impact of increased mutagenesis on adaptation to high temperature in bacteriophage Qβ
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Recent advances in inferring viral diversity from high-throughput sequencing data
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Identification of epistatic mutations and insights into the evolution of the influenza virus using a mass-based protein phylogenetic approach
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Bacteriophage Host Range and Bacterial Resistance
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Fitness of RNA virus decreased by Muller's ratchet
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Evolvability of an RNA virus is determined by its mutational neighbourhood
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Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus
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Superspreading and the effect of individual variation on disease emergence
inferredcites →https://doi.org/10.1038/nature12861openalex-snapshot
Mutational and fitness landscapes of an RNA virus revealed through population sequencing
inferredcites →https://doi.org/10.1038/nature14279openalex-snapshot
Quantitative evolutionary dynamics using high-resolution lineage tracking
inferredcites →https://doi.org/10.1038/nature18959openalex-snapshot
Tempo and mode of genome evolution in a 50,000-generation experiment
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Bacteriophage resistance mechanisms
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Patterns of epistasis in RNA viruses: a review of the evidence from vaccine design
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Simple genomes, complex interactions: Epistasis in RNA virus
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The contribution of epistasis to the architecture of fitness in an RNA virus
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Retroviral host range extension is coupled with Env-activating mutations resulting in receptor-independent entry
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The Sequence Alignment/Map format and SAMtools
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Evolutionary Reversals During Viral Adaptation to Alternating Hosts
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Escherichia coli rpoB Mutants Have Increased Evolvability in Proportion to Their Fitness Defects
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Temporal Dynamics of Intrahost Molecular Evolution for a Plant RNA Virus
inferredcites →https://doi.org/10.1094/mpmi-09-10-0214openalex-snapshot
The Evolutionary Genetics of Emerging Plant RNA Viruses
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Characterization of Type IV Pilus Genes in Pseudomonas syringae pv. tomato DC3000
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Mutational neighbourhood and mutation supply rate constrain adaptation inPseudomonas aeruginosa
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Viral evolution and the emergence of SARS coronavirus
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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
inferredcites →https://doi.org/10.1110/ps.041250005openalex-snapshot
The P5 protein from bacteriophage phi‐6 is a distant homolog of lytic transglycosylases
inferredcites →https://doi.org/10.1111/evo.12913openalex-snapshot
Field measurements of genotype by environment interaction for fitness caused by spontaneous mutations inArabidopsis thaliana
inferredcites →https://doi.org/10.1111/evo.13193openalex-snapshot
Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change
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EVOLUTION OF HOST SPECIFICITY DRIVES REPRODUCTIVE ISOLATION AMONG RNA VIRUSES
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01051.xopenalex-snapshot
ROLE OF EVOLVED HOST BREADTH IN THE INITIAL EMERGENCE OF AN RNA VIRUS
inferredcites →https://doi.org/10.1111/jeb.12748openalex-snapshot
The impact of high‐order epistasis in the within‐host fitness of a positive‐sense plant RNA virus
inferredcites →https://doi.org/10.1126/science.1187816openalex-snapshot
Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
inferredcites →https://doi.org/10.1126/science.aag0822openalex-snapshot
Spatiotemporal microbial evolution on antibiotic landscapes
inferredcites →https://doi.org/10.1126/scitranslmed.3009872openalex-snapshot
Emerging Viral Diseases: Confronting Threats with New Technologies
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Plasmid-directed assembly of the lipid-containing membrane of bacteriophage phi 6
inferredcites →https://doi.org/10.1128/jvi.00322-16openalex-snapshot
Both Epistasis and Diversifying Selection Drive the Structural Evolution of the Ebola Virus Glycoprotein Mucin-Like Domain
inferredcites →https://doi.org/10.1128/jvi.01016-13openalex-snapshot
Mammalian Adaptation in the PB2 Gene of Avian H5N1 Influenza Virus
inferredcites →https://doi.org/10.1128/jvi.01385-18openalex-snapshot
Existing Host Range Mutations Constrain Further Emergence of RNA Viruses
inferredcites →https://doi.org/10.1128/jvi.01498-14openalex-snapshot
Rooting the Phylogenetic Tree of Middle East Respiratory Syndrome Coronavirus by Characterization of a Conspecific Virus from an African Bat
inferredcites →https://doi.org/10.1128/jvi.03146-14openalex-snapshot
Influenza Virus Reservoirs and Intermediate Hosts: Dogs, Horses, and New Possibilities for Influenza Virus Exposure of Humans
inferredcites →https://doi.org/10.1128/jvi.03483-14openalex-snapshot
Effective Lethal Mutagenesis of Influenza Virus by Three Nucleoside Analogs
inferredcites →https://doi.org/10.1128/jvi.06187-11openalex-snapshot
Role of Multiple Hosts in the Cross-Species Transmission and Emergence of a Pandemic Parvovirus
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Proteins of bacteriophage phi6
inferredcites →https://doi.org/10.1128/jvi.48.2.410-418.1983openalex-snapshot
Host range mutants of human rhinovirus in which nonstructural proteins are altered
inferredcites →https://doi.org/10.1128/jvi.65.4.1710-1718.1991openalex-snapshot
Host range mutant of human immunodeficiency virus type 1: modification of cell tropism by a single point mutation at the neutralization epitope in the env gene
inferredcites →https://doi.org/10.1128/jvi.67.4.1761-1764.1993openalex-snapshot
A single amino acid in the PB2 gene of influenza A virus is a determinant of host range
inferredcites →https://doi.org/10.1128/jvi.73.3.2420-2424.1999openalex-snapshot
Hybrid Frequencies Confirm Limit to Coinfection in the RNA Bacteriophage φ6
inferredcites →https://doi.org/10.1128/jvi.77.24.13017-13027.2003openalex-snapshot
Role of Nonstructural Proteins 3A and 3B in Host Rangeand Pathogenicity of Foot-and-Mouth DiseaseVirus
inferredcites →https://doi.org/10.1128/mmbr.00004-08openalex-snapshot
Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases
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Precise Packaging of the Three Genomic Segments of the Double-Stranded-RNA Bacteriophage φ6
inferredcites →https://doi.org/10.1146/annurev-micro-090110-102833openalex-snapshot
On the Biological Success of Viruses
inferredcites →https://doi.org/10.1186/1471-2148-12-153openalex-snapshot
Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6
inferredcites →https://doi.org/10.1371/journal.pcbi.1003254openalex-snapshot
Feature Selection Methods for Identifying Genetic Determinants of Host Species in RNA Viruses
inferredcites →https://doi.org/10.1371/journal.pgen.1001301openalex-snapshot
Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins
inferredcites →https://doi.org/10.1371/journal.pgen.1004000openalex-snapshot
Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
inferredcites →https://doi.org/10.1371/journal.pone.0113078openalex-snapshot
Frequency and Fitness Consequences of Bacteriophage Φ6 Host Range Mutations
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1534/genetics.105.051136openalex-snapshot
Pleiotropic Costs of Niche Expansion in the RNA Bacteriophage Φ6
inferredcites →https://doi.org/10.1534/genetics.106.064634openalex-snapshot
High Frequency of Mutations That Expand the Host Range of an RNA Virus
inferredcites →https://doi.org/10.1534/genetics.109.112458openalex-snapshot
Fitness Epistasis and Constraints on Adaptation in a Human Immunodeficiency Virus Type 1 Protein Region
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SPECIES: AnRPackage for Species Richness Estimation
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Robust Estimation of Population Size When Capture Probabilities Vary Among Animals
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Evolvability and robustness in populations of RNA virus Φ6
inferredcites →https://doi.org/10.3390/v10040189openalex-snapshot
Development and Validation of a Microtiter Plate-Based Assay for Determination of Bacteriophage Host Range and Virulence
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7554/elife.00631openalex-snapshot
Stability-mediated epistasis constrains the evolution of an influenza protein
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Genetic variation in adaptability and pleiotropy in budding yeast
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Diversity and Distinctive Traits of the Global RNA Virome in Urban Environments
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Mass-Based Protein Phylogenetic Approach to Identify Epistasis
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Intra-population Interactions and the Evolution of RNA Phages
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Emerging roles of extracellular vesicles in mediating RNA virus infection
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Evolvability Costs of Niche Expansion
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Prevalence, host range, and characterization of multiple Palo verde broom emaravirus genomes and eriophyid mites from Parkinsonia spp. in Arizona
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Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda’s fitness landscape and enables speciation
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Diversity and distinctive characteristics of the global RNA virome in urban and peri-urban environments
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Making the leap from technique to treatment — genetic engineering is paving the way for more efficient phage therapy
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High parasite diversity maintained after an alga–virus coevolutionary arms race
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Genomic analysis of Ostreococcus tauri -infecting viruses reveals a hypervariable region associated with host–virus interactions
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Gauging genetic diversity of generalists: A test of genetic and ecological generalism with RNA virus experimental evolution
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Developing an empirical model for spillover and emergence: Orsay virus host range in Caenorhabditis
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Biomathematical model of prebiotic autocatalytic RNA networks shows birth of adaptive immunity from degenerating molecular parasite catalysts
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Narrowed host ranges do not constrain future host range expansion in RNA phage phi6
inferred← citeshttps://doi.org/10.1101/771998openalex-snapshot
Viral host-range evolvability changes in response to fluctuating selection
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Variable routes to genomic and host adaptation among coronaviruses
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Narrowed host ranges do not constrain future host range expansion in RNA phage Φ6
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A Trait-Based Approach to Predicting Viral Host-Range Evolvability
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Is the best resistance strategy against begomoviruses yet to come? A Comprehensive Review
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Variation Profile of the Orthotospovirus Genome
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Experimental Evolution Studies in Φ6 Cystovirus
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A Review on SARS-CoV-2 Genome in the Aquatic Environment of Africa: Prevalence, Persistence and the Future Prospects
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Experimental-clinical analysis of some aspects of the Coronaviruses emergence in piggery during 1987–2020
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Demonstrating UVC LEDs inside Automobile HVAC Chambers for Clean Cabin Air and Airborne Transmission Risk Reduction
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