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Model-based assessments of differential introgression and linked natural selection during divergence and speciation

https://doi.org/10.1101/786038
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-0348-8948-3_8openalex-snapshot
Testing speciation models with DNA sequence data
inferredcites →https://doi.org/10.1016/0040-5809(83)90020-5openalex-snapshot
The effect on neutral gene flow of selection at a linked locus
inferredcites →https://doi.org/10.1016/j.celrep.2013.09.042openalex-snapshot
Hybridization Reveals the Evolving Genomic Architecture of Speciation
inferredcites →https://doi.org/10.1017/s0016672397002954openalex-snapshot
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
inferredcites →https://doi.org/10.1038/166247a0openalex-snapshot
Genetical Structure of Populations
inferredcites →https://doi.org/10.1038/hdy.1986.135openalex-snapshot
The barrier to genetic exchange between hybridising populations
inferredcites →https://doi.org/10.1038/hdy.2009.151openalex-snapshot
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
inferredcites →https://doi.org/10.1038/nrg2526openalex-snapshot
Effective population size and patterns of molecular evolution and variation
inferredcites →https://doi.org/10.1038/nrg3446openalex-snapshot
Understanding the origin of species with genome-scale data: modelling gene flow
inferredcites →https://doi.org/10.1038/nrg3644openalex-snapshot
Genomics and the origin of species
inferredcites →https://doi.org/10.1038/s41467-018-04963-6openalex-snapshot
The origin and remolding of genomic islands of differentiation in the European sea bass
inferredcites →https://doi.org/10.1073/pnas.0611164104openalex-snapshot
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
inferredcites →https://doi.org/10.1073/pnas.1801832115openalex-snapshot
Selection and gene flow shape genomic islands that control floral guides
inferredcites →https://doi.org/10.1086/279872openalex-snapshot
Coefficients of Inbreeding and Relationship
inferredcites →https://doi.org/10.1093/genetics/125.4.873openalex-snapshot
A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data.
inferredcites →https://doi.org/10.1093/genetics/155.2.981openalex-snapshot
Detecting Bottlenecks and Selective Sweeps From DNA Sequence Polymorphism
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/73.1.147openalex-snapshot
THE ISLAND MODEL OF POPULATION DIFFERENTIATION: A GENERAL SOLUTION
inferredcites →https://doi.org/10.1093/molbev/msm143openalex-snapshot
Locus- and Population-Specific Selection and Differentiation between Incipient Species of Anopheles gambiae
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004022openalex-snapshot
Genetic Evidence for Long-Term Population Decline in a Savannah-Dwelling Primate: Inferences from a Hierarchical Bayesian Model
inferredcites →https://doi.org/10.1098/rstb.2011.0260openalex-snapshot
Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow
inferredcites →https://doi.org/10.1101/gr.150615.112openalex-snapshot
Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies
inferredcites →https://doi.org/10.1101/gr.159426.113openalex-snapshot
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
inferredcites →https://doi.org/10.1101/gr.196485.115openalex-snapshot
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferredcites →https://doi.org/10.1101/gr.5045006openalex-snapshot
Genomic islands of differentiation between house mouse subspecies
inferredcites →https://doi.org/10.1111/1755-0998.12437openalex-snapshot
IM a2p – parallel MCMC and inference of ancient demography under the Isolation with migration ( IM ) model
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03921.xopenalex-snapshot
The genetic mosaic suggests a new role for hitchhiking in ecological speciation
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04005.xopenalex-snapshot
Inferring the history of speciation in house mice from autosomal, X‐linked, Y‐linked and mitochondrial genes
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04531.xopenalex-snapshot
Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01092.xopenalex-snapshot
SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13557openalex-snapshot
A genomic perspective on hybridization and speciation
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135825openalex-snapshot
Geographic Mode of Speciation and Genomic Divergence
inferredcites →https://doi.org/10.1146/annurev.ecolsys.26.1.343openalex-snapshot
A GENETIC PERSPECTIVE ON THE ORIGIN AND HISTORY OF HUMANS
inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot
Genomic Islands of Speciation in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
inferredcites →https://doi.org/10.1371/journal.pgen.1004966openalex-snapshot
Genomics of Divergence along a Continuum of Parapatric Population Differentiation
inferredcites →https://doi.org/10.1371/journal.pgen.1007358openalex-snapshot
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
inferredcites →https://doi.org/10.1371/journal.pone.0118621openalex-snapshot
A New Method to Scan Genomes for Introgression in a Secondary Contact Model
inferredcites →https://doi.org/10.1534/genetics.113.149211openalex-snapshot
Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/genetics/iyaa025openalex-snapshot
The rates of introgression and barriers to genetic exchange between hybridizing species: sex chromosomes vs autosomes
inferred← citeshttps://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferred← citeshttps://doi.org/10.1093/genetics/iyae089openalex-snapshot
Selection leads to false inferences of introgression using popular methods
inferred← citeshttps://doi.org/10.1111/1755-0998.13323openalex-snapshot
DILS: Demographic inferences with linked selection by using ABC
inferred← citeshttps://doi.org/10.1111/1755-0998.13944openalex-snapshot
RIDGE , a tool tailored to detect gene flow barriers across species pairs
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010999openalex-snapshot
Demographically explicit scans for barriers to gene flow using gIMble
inferred← citeshttps://doi.org/10.70675/eee1fbcezca9dz4b70za861z54a03d20fa17openalex-snapshot
Approche génomique de la détection des barrières au flux de gènes
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