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A user guide to environmental protistology: primers, metabarcoding, sequencing, and analyses

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ecy.2161openalex-snapshot

Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist species

inferredcites →https://doi.org/10.1007/978-1-62703-646-7openalex-snapshot

Multiple Sequence Alignment Methods

inferredcites →https://doi.org/10.1007/978-1-62703-646-7_5openalex-snapshot

BLAST and FASTA Similarity Searching for Multiple Sequence Alignment

inferredcites →https://doi.org/10.1007/s00248-015-0684-6openalex-snapshot

Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships’ Ballast Water: Implications for Biogeography and Infectious Diseases

inferredcites →https://doi.org/10.1007/s00253-017-8565-1openalex-snapshot

Unravel the hidden protistan diversity: application of blocking primers to suppress PCR amplification of metazoan DNA

inferredcites →https://doi.org/10.1007/s13127-011-0050-6openalex-snapshot

Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols

inferredcites →https://doi.org/10.1016/j.ejop.2011.11.004openalex-snapshot

Concepts in protistology: Species definitions and boundaries

inferredcites →https://doi.org/10.1016/j.ejop.2016.02.003openalex-snapshot

Protist metabarcoding and environmental biomonitoring: Time for change

inferredcites →https://doi.org/10.1016/j.fbr.2011.10.003openalex-snapshot

Three reasons to re-evaluate fungal diversity ‘on Earth and in the ocean’

inferredcites →https://doi.org/10.1016/j.femsec.2004.10.006openalex-snapshot

Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene

inferredcites →https://doi.org/10.1016/j.funeco.2019.03.005openalex-snapshot

Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline

inferredcites →https://doi.org/10.1016/j.ijheh.2017.10.008openalex-snapshot

Multiple identification of most important waterborne protozoa in surface water used for irrigation purposes by 18S rRNA amplicon-based metagenomics

inferredcites →https://doi.org/10.1016/j.mib.2005.04.010openalex-snapshot

Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis

inferredcites →https://doi.org/10.1016/j.mimet.2008.06.012openalex-snapshot

An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments

inferredcites →https://doi.org/10.1016/j.mimet.2015.01.013openalex-snapshot

An improved high throughput sequencing method for studying oomycete communities

inferredcites →https://doi.org/10.1016/j.protis.2009.07.003openalex-snapshot

Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae

inferredcites →https://doi.org/10.1016/j.protis.2010.05.002openalex-snapshot

Comparing Potential COI and SSU rDNA Barcodes for Assessing the Diversity and Phylogenetic Relationships of Cyphoderiid Testate Amoebae (Rhizaria: Euglyphida)

inferredcites →https://doi.org/10.1016/j.protis.2011.10.003openalex-snapshot

COI Barcoding of Nebelid Testate Amoebae (Amoebozoa: Arcellinida): Extensive Cryptic Diversity and Redefinition of the Hyalospheniidae Schultze

inferredcites →https://doi.org/10.1016/j.protis.2012.11.006openalex-snapshot

Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates

inferredcites →https://doi.org/10.1016/j.protis.2014.07.006openalex-snapshot

Wide Occurrence of SSU rDNA Intragenomic Polymorphism in Foraminifera and its Implications for Molecular Species Identification

inferredcites →https://doi.org/10.1016/j.protis.2017.03.005openalex-snapshot

The Protistan Microbiome of Grassland Soil: Diversity in the Mesoscale

inferredcites →https://doi.org/10.1016/j.protis.2019.125681openalex-snapshot

Evidence of Intra-individual SSU Polymorphisms in Dark-spored Myxomycetes (Amoebozoa)

inferredcites →https://doi.org/10.1016/j.pt.2015.06.013openalex-snapshot

Diverse Applications of Environmental DNA Methods in Parasitology

inferredcites →https://doi.org/10.1016/j.resmic.2016.03.003openalex-snapshot

Metagenomes provide valuable comparative information on soil microeukaryotes

inferredcites →https://doi.org/10.1016/j.soilbio.2013.10.024openalex-snapshot

Amplification primers of SSU rDNA for soil protists

inferredcites →https://doi.org/10.1016/j.soilbio.2017.04.001openalex-snapshot

Soil protistology rebooted: 30 fundamental questions to start with

inferredcites →https://doi.org/10.1016/j.soilbio.2019.05.025openalex-snapshot

Microbial amendments alter protist communities within the soil microbiome

inferredcites →https://doi.org/10.1016/j.tim.2018.10.009openalex-snapshot

Are We Overestimating Protistan Diversity in Nature?

inferredcites →https://doi.org/10.1016/s0966-842x(01)02257-0openalex-snapshot

The molecular ecology of microbial eukaryotes unveils a hidden world

inferredcites →https://doi.org/10.1038/35054537openalex-snapshot

Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton

inferredcites →https://doi.org/10.1038/35054541openalex-snapshot

Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity

inferredcites →https://doi.org/10.1038/ismej.2010.39openalex-snapshot

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA

inferredcites →https://doi.org/10.1038/ismej.2013.119openalex-snapshot

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

inferredcites →https://doi.org/10.1038/ismej.2013.136openalex-snapshot

Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians

inferredcites →https://doi.org/10.1038/ismej.2015.30openalex-snapshot

Metatranscriptomic census of active protists in soils

inferredcites →https://doi.org/10.1038/ismej.2016.31openalex-snapshot

Local diversity of heathland Cercozoa explored by in-depth sequencing

inferredcites →https://doi.org/10.1038/ismej.2017.119openalex-snapshot

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

inferredcites →https://doi.org/10.1038/nature04983openalex-snapshot

Archaea predominate among ammonia-oxidizing prokaryotes in soils

inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot

Defining the core Arabidopsis thaliana root microbiome

inferredcites →https://doi.org/10.1038/nature24621openalex-snapshot

A communal catalogue reveals Earth’s multiscale microbial diversity

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/nmicrobiol.2016.5openalex-snapshot

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom

inferredcites →https://doi.org/10.1038/nnano.2009.12openalex-snapshot

Continuous base identification for single-molecule nanopore DNA sequencing

inferredcites →https://doi.org/10.1038/nrmicro.2016.160openalex-snapshot

Probing the evolution, ecology and physiology of marine protists using transcriptomics

inferredcites →https://doi.org/10.1038/nrmicro3468openalex-snapshot

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

inferredcites →https://doi.org/10.1038/s41396-018-0281-zopenalex-snapshot

Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations

inferredcites →https://doi.org/10.1038/s41467-017-02235-3openalex-snapshot

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

inferredcites →https://doi.org/10.1038/s41467-017-02342-1openalex-snapshot

A global ocean atlas of eukaryotic genes

inferredcites →https://doi.org/10.1038/s41559-017-0091openalex-snapshot

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

inferredcites →https://doi.org/10.1038/s41559-019-0828-zopenalex-snapshot

Range-expansion effects on the belowground plant microbiome

inferredcites →https://doi.org/10.1038/s41564-017-0012-7openalex-snapshot

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

inferredcites →https://doi.org/10.1038/s41564-017-0062-xopenalex-snapshot

Detecting macroecological patterns in bacterial communities across independent studies of global soils

inferredcites →https://doi.org/10.1038/s41579-018-0029-9openalex-snapshot

Best practices for analysing microbiomes

inferredcites →https://doi.org/10.1038/s41579-018-0116-yopenalex-snapshot

Mycobiome diversity: high-throughput sequencing and identification of fungi

inferredcites →https://doi.org/10.1038/sdata.2015.23openalex-snapshot

Open science resources for the discovery and analysis of Tara Oceans data

inferredcites →https://doi.org/10.1038/srep19068openalex-snapshot

Metacommunity analysis of amoeboid protists in grassland soils

inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot

Microbial diversity in the deep sea and the underexplored “rare biosphere”

inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

inferredcites →https://doi.org/10.1073/pnas.1001665107openalex-snapshot

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

inferredcites →https://doi.org/10.1073/pnas.1222099110openalex-snapshot

Pattern and synchrony of gene expression among sympatric marine microbial populations

inferredcites →https://doi.org/10.1093/bfgp/elw043openalex-snapshot

On the design and prospects of direct RNA sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1093/femsec/fiw200openalex-snapshot

Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site

inferredcites →https://doi.org/10.1093/femsre/fuy006openalex-snapshot

Soil protists: a fertile frontier in soil biology research

inferredcites →https://doi.org/10.1093/gigascience/giz006openalex-snapshot

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

inferredcites →https://doi.org/10.1093/molbev/msr303openalex-snapshot

Low Evolutionary Diversification in a Widespread and Abundant Uncultured Protist (MAST-4)

inferredcites →https://doi.org/10.1093/nar/21.13.3025openalex-snapshot

Compilation of small ribosomal subunit RNA structures

inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

inferredcites →https://doi.org/10.1093/nar/gks1160openalex-snapshot

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

inferredcites →https://doi.org/10.1093/nar/gkt1244openalex-snapshot

Ribosomal Database Project: data and tools for high throughput rRNA analysis

inferredcites →https://doi.org/10.1098/rsbl.2003.0025openalex-snapshot

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

inferredcites →https://doi.org/10.1111/1365-2435.13490openalex-snapshot

The eukaryome: Diversity and role of microeukaryotic organisms associated with animal hosts

inferredcites →https://doi.org/10.1111/1462-2920.12065openalex-snapshot

Short‐term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

inferredcites →https://doi.org/10.1111/1462-2920.12591openalex-snapshot

Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

inferredcites →https://doi.org/10.1111/1462-2920.13220openalex-snapshot

Differences in soil micro‐eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

inferredcites →https://doi.org/10.1111/1462-2920.13235openalex-snapshot

Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal‐associated protists

inferredcites →https://doi.org/10.1111/1462-2920.13309openalex-snapshot

Thorough high‐throughput sequencing analyses unravels huge diversities of soil parasitic protists

inferredcites →https://doi.org/10.1111/1462-2920.13824openalex-snapshot

Grazing of leaf‐associated Cercomonads (Protists: Rhizaria: Cercozoa) structures bacterial community composition and function

inferredcites →https://doi.org/10.1111/1462-2920.13952openalex-snapshot

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta

inferredcites →https://doi.org/10.1111/1462-2920.14259openalex-snapshot

Shifting metabolic priorities among key protistan taxa within and below the euphotic zone

inferredcites →https://doi.org/10.1111/1462-2920.14264openalex-snapshot

EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates

inferredcites →https://doi.org/10.1111/1462-2920.14733openalex-snapshot

Validation of a universal set of primers to study animal‐associated microeukaryotic communities

inferredcites →https://doi.org/10.1111/1755-0998.12410openalex-snapshot

PFR 2 : a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution

inferredcites →https://doi.org/10.1111/1755-0998.12459openalex-snapshot

Comparative study of the validity of three regions of the 18S‐ rRNA gene for massively parallel sequencing‐based monitoring of the planktonic eukaryote community

inferredcites →https://doi.org/10.1111/1755-0998.12472openalex-snapshot

Mitochondrial capture enriches mito‐DNA 100 fold, enabling PCR‐free mitogenomics biodiversity analysis

inferredcites →https://doi.org/10.1111/1755-0998.12729openalex-snapshot

New barcoded primers for efficient retrieval of cercozoan sequences in high‐throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts

inferredcites →https://doi.org/10.1111/1755-0998.12781openalex-snapshot

dinoref : A curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene

inferredcites →https://doi.org/10.1111/1755-0998.13117openalex-snapshot

Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity

inferredcites →https://doi.org/10.1111/2041-210x.12037openalex-snapshot

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

inferredcites →https://doi.org/10.1111/j.1469-8137.2004.01066.xopenalex-snapshot

Protozoa and plant growth: the microbial loop in soil revisited

inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03003.xopenalex-snapshot

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

inferredcites →https://doi.org/10.1111/j.1550-7408.2004.tb00574.xopenalex-snapshot

Preferential PCR Amplification of Parasitic Protistan Small Subunit rDNA from Metazoan Tissues

inferredcites →https://doi.org/10.1111/j.1550-7408.2011.00602.xopenalex-snapshot

Comparing the Hyper‐Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity

inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01437.xopenalex-snapshot

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

inferredcites →https://doi.org/10.1111/jeu.12217openalex-snapshot

Estimating Protistan Diversity Using High‐Throughput Sequencing

inferredcites →https://doi.org/10.1111/jeu.12414openalex-snapshot

UniEuk: Time to Speak a Common Language in Protistology!

inferredcites →https://doi.org/10.1111/jeu.12691openalex-snapshot

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

inferredcites →https://doi.org/10.1111/mec.12819openalex-snapshot

Effects of long‐term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

inferredcites →https://doi.org/10.1111/mec.13195openalex-snapshot

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

inferredcites →https://doi.org/10.1111/mec.13238openalex-snapshot

Not all are free‐living: high‐throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa

inferredcites →https://doi.org/10.1111/nph.12243openalex-snapshot

Fungal community analysis by high‐throughput sequencing of amplified markers – a user's guide

inferredcites →https://doi.org/10.1111/nph.14776openalex-snapshot

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

inferredcites →https://doi.org/10.1126/science.1112665openalex-snapshot

Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil

inferredcites →https://doi.org/10.1126/science.1203980openalex-snapshot

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

inferredcites →https://doi.org/10.1126/science.1256688openalex-snapshot

Global diversity and geography of soil fungi

inferredcites →https://doi.org/10.1126/science.1257594openalex-snapshot

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

inferredcites →https://doi.org/10.1126/science.1261605openalex-snapshot

Eukaryotic plankton diversity in the sunlit ocean

inferredcites →https://doi.org/10.1126/science.1262073openalex-snapshot

Determinants of community structure in the global plankton interactome

inferredcites →https://doi.org/10.1126/science.276.5313.734openalex-snapshot

A Molecular View of Microbial Diversity and the Biosphere

inferredcites →https://doi.org/10.1126/science.aap9516openalex-snapshot

A global atlas of the dominant bacteria found in soil

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/aem.00560-16openalex-snapshot

Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

inferredcites →https://doi.org/10.1128/aem.65.2.795-801.1999openalex-snapshot

Changes in Bacterial and Eukaryotic Community Structure after Mass Lysis of Filamentous Cyanobacteria Associated with Viruses

inferredcites →https://doi.org/10.1128/microbiolspec.funk-0052-2016openalex-snapshot

Fungal Diversity Revisited: 2.2 to 3.8 Million Species

inferredcites →https://doi.org/10.1128/mr.51.2.221-271.1987openalex-snapshot

Bacterial evolution

inferredcites →https://doi.org/10.1128/msystems.00009-15openalex-snapshot

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

inferredcites →https://doi.org/10.1186/1741-7007-2-13openalex-snapshot

How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys

inferredcites →https://doi.org/10.1186/1742-9994-5-1openalex-snapshot

Muscle formation during embryogenesis of the polychaete Ophryotrocha diadema (Dorvilleidae) – new insights into annelid muscle patterns

inferredcites →https://doi.org/10.1186/gb-2007-8-7-r143openalex-snapshot

Accuracy and quality of massively parallel DNA pyrosequencing

inferredcites →https://doi.org/10.1186/s12866-016-0738-zopenalex-snapshot

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform

inferredcites →https://doi.org/10.1186/s13742-016-0111-zopenalex-snapshot

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

inferredcites →https://doi.org/10.1371/journal.pbio.1001177openalex-snapshot

A Holistic Approach to Marine Eco-Systems Biology

inferredcites →https://doi.org/10.1371/journal.pbio.1001419openalex-snapshot

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

inferredcites →https://doi.org/10.1371/journal.pbio.2005849openalex-snapshot

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

inferredcites →https://doi.org/10.1371/journal.pbio.3000106openalex-snapshot

A census-based estimate of Earth's bacterial and archaeal diversity

inferredcites →https://doi.org/10.1371/journal.pone.0002527openalex-snapshot

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

inferredcites →https://doi.org/10.1371/journal.pone.0006372openalex-snapshot

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

inferredcites →https://doi.org/10.1371/journal.pone.0027492openalex-snapshot

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

inferredcites →https://doi.org/10.1371/journal.pone.0042780openalex-snapshot

Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker

inferredcites →https://doi.org/10.1371/journal.pone.0049090openalex-snapshot

Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases

inferredcites →https://doi.org/10.1371/journal.pone.0087624openalex-snapshot

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

inferredcites →https://doi.org/10.1371/journal.pone.0095567openalex-snapshot

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

inferredcites →https://doi.org/10.1371/journal.pone.0104641openalex-snapshot

SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications

inferredcites →https://doi.org/10.3354/meps010257openalex-snapshot

The Ecological Role of Water-Column Microbes in the Sea

inferredcites →https://doi.org/10.3389/fmicb.2014.00298openalex-snapshot

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

inferredcites →https://doi.org/10.3389/fmicb.2015.00098openalex-snapshot

Transcriptome analyses to investigate symbiotic relationships between marine protists

inferredcites →https://doi.org/10.3389/fmicb.2019.00248openalex-snapshot

Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts?

inferredcites →https://doi.org/10.3897/mycokeys.10.4852openalex-snapshot

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

inferredcites →https://doi.org/10.5670/oceanog.1993.04openalex-snapshot

Probing Marine Systems with Ribosomal RNAs

inferredcites →https://doi.org/10.7717/peerj.1420openalex-snapshot

Swarm v2: highly-scalable and high-resolution amplicon clustering

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

inferredcites →https://doi.org/10.7717/peerj.593openalex-snapshot

Swarm: robust and fast clustering method for amplicon-based studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/edn3.288openalex-snapshot

Temporal changes of genetic structure and diversity in a marine diatom genus discovered via metabarcoding

inferred← citeshttps://doi.org/10.1002/edn3.580openalex-snapshot

Assessing the performance of short 18S rDNA markers for environmental DNA metabarcoding of marine protists

inferred← citeshttps://doi.org/10.1007/978-1-0716-2871-3_1openalex-snapshot

Metabarcoding Approaches for Soil Eukaryotes, Protists, and Microfauna

inferred← citeshttps://doi.org/10.1007/s00374-020-01502-8openalex-snapshot

Biochar affects taxonomic and functional community composition of protists

inferred← citeshttps://doi.org/10.1007/s10750-023-05344-xopenalex-snapshot

Comparative identification of phytoplankton taxonomic and functional group approach in karst lakes using classical microscopy and eDNA metabarcoding for ecological status assessment

inferred← citeshttps://doi.org/10.1007/s10933-025-00369-9openalex-snapshot

Comparative analyses of 18S rDNA regions for assessing the eukaryotic community in ancient lake sediment samples

inferred← citeshttps://doi.org/10.1016/b978-0-12-822941-5.00005-3openalex-snapshot

Soil fauna: occurrence, biodiversity, and roles in ecosystem function

inferred← citeshttps://doi.org/10.1016/j.ejop.2020.125758openalex-snapshot

Heterotrophic flagellates and centrohelid heliozoans from marine waters of Curacao, the Netherlands Antilles

inferred← citeshttps://doi.org/10.1016/j.envint.2020.106262openalex-snapshot

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

inferred← citeshttps://doi.org/10.1016/j.envint.2021.106438openalex-snapshot

A global overview of the trophic structure within microbiomes across ecosystems

inferred← citeshttps://doi.org/10.1016/j.geoderma.2025.117201openalex-snapshot

Land use intensity differently influences soil communities across a range of arable fields and grasslands

inferred← citeshttps://doi.org/10.1016/j.hal.2021.102077openalex-snapshot

Diverse harmful microalgal community assemblages in the Johor Strait and the environmental effects on its community dynamics

inferred← citeshttps://doi.org/10.1016/j.jhazmat.2022.128297openalex-snapshot

Interactions between soil protists and pollutants: An unsolved puzzle

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.155175openalex-snapshot

DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region

inferred← citeshttps://doi.org/10.1016/j.watbs.2022.100057openalex-snapshot

Evaluation of different primers of the 18S rRNA gene to profile amoeba communities in environmental samples

inferred← citeshttps://doi.org/10.1016/j.watres.2023.120371openalex-snapshot

Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary

inferred← citeshttps://doi.org/10.1038/s41396-022-01244-5openalex-snapshot

Trophic interactions between predatory protists and pathogen-suppressive bacteria impact plant health

inferred← citeshttps://doi.org/10.1080/09593330.2026.2709903openalex-snapshot

Free-living amoebae predation in nutrient-enriched treated wastewater: ecological potential and machine learning-assisted analysis

inferred← citeshttps://doi.org/10.1094/pbiomes-05-20-0040-taopenalex-snapshot

Validation of a PNA Clamping Method for Reducing Host DNA Amplification and Increasing Eukaryotic Diversity in Rhizosphere Microbiome Studies

inferred← citeshttps://doi.org/10.1094/pbiomes-4-4openalex-snapshot

Full Issue PDF

inferred← citeshttps://doi.org/10.1098/rsob.200407openalex-snapshot

Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses

inferred← citeshttps://doi.org/10.1101/2023.10.09.561583openalex-snapshot

On the relationship between protist metabarcoding and protist metagenome-assembled genomes

inferred← citeshttps://doi.org/10.1101/2024.01.23.576836openalex-snapshot

The dilemma of underestimating freshwater biodiversity: morphological and molecular approaches

inferred← citeshttps://doi.org/10.1111/1365-2435.70304openalex-snapshot

Wildfire strengthens the relationship between soil biodiversity and ecosystem multifunctionality in subtropical forests

inferred← citeshttps://doi.org/10.1111/1365-2664.70295openalex-snapshot

Dual‐scale drivers of soil biodiversity in agroecosystems: Field management outweighs landscape effects, but both matter

inferred← citeshttps://doi.org/10.1111/1462-2920.15495openalex-snapshot

Evaluation of V2 18S rDNA barcode marker and assessment of sample collection and DNA extraction methods for metabarcoding of autotrophic euglenids

inferred← citeshttps://doi.org/10.1111/1462-2920.70321openalex-snapshot

Protist Diversity in La Union, Philippines Revealed by Metabarcoding: Ecosystem‐ and Database‐Dependent Lineage Patterns

inferred← citeshttps://doi.org/10.1111/1755-0998.13322openalex-snapshot

The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms

inferred← citeshttps://doi.org/10.1111/1755-0998.13623openalex-snapshot

Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing

inferred← citeshttps://doi.org/10.1111/1755-0998.70077openalex-snapshot

Comparison of Metabarcoding and Shotgun Sequencing Confirms the Relevance of Chloroplastic rRNA Genes to Assess Community Structure of Lake Phytoplankton

inferred← citeshttps://doi.org/10.1111/1755-0998.70138openalex-snapshot

A Scalable and Cost‐Effective In‐Line Barcoding Strategy for Standardized 16S rRNA Gene Amplicon Sequencing: Performance Evaluation and Bias Assessment

inferred← citeshttps://doi.org/10.1128/aem.00800-24openalex-snapshot

Measurements of soil protist richness and community composition are influenced by primer pair, annealing temperature, and bioinformatics choices

inferred← citeshttps://doi.org/10.1134/s1062359022602804openalex-snapshot

Diversity and Transformation of the Community of Planktonic Freshwater Protists in the Estuarine Tributary Zone of a Large Plainland Reservoir: Metabarcoding of the 18S Ribosomal RNA Gene

inferred← citeshttps://doi.org/10.1186/s12862-024-02261-yopenalex-snapshot

The dilemma of underestimating freshwater biodiversity: morphological and molecular approaches

inferred← citeshttps://doi.org/10.1371/journal.pone.0303697openalex-snapshot

Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

inferred← citeshttps://doi.org/10.1590/1676-0611-bn-2021-1214openalex-snapshot

Metabarcoding advances for ecology and biogeography of Neotropical protists: what do we know, where do we go?

inferred← citeshttps://doi.org/10.21597/jist.1040435openalex-snapshot

Three New Records from Euglenozoa In Acarlar Floodplain Lake For Turkish Freshwater Algal Flora

inferred← citeshttps://doi.org/10.22541/au.170666553.30020837/v1openalex-snapshot

Discrepancies between prokaryotes and eukaryotes need to be considered in soil DNA-based studies

inferred← citeshttps://doi.org/10.31857/s102634702260039xopenalex-snapshot

Diversity and Transformation of the Freshwater Planktonic Protist Community Along the Estuarine Tributary Zone of the Large Plainland Reservoir: 18S RRNA Gene Metabarkoding

inferred← citeshttps://doi.org/10.3389/fmars.2021.692538openalex-snapshot

A Beginner’s Guide on Integrating *Omics Approaches to Study Marine Microbial Communities: Details and Discussions From Sample Collection to Bioinformatics Analysis

inferred← citeshttps://doi.org/10.3389/fmars.2022.971939openalex-snapshot

Eukaryotic diversity of marine biofouling from coastal to offshore areas

inferred← citeshttps://doi.org/10.3389/fmicb.2026.1749803openalex-snapshot

Dynamic changes in protist community composition along a surface water-groundwater transect in the Danube wetland Lobau, Vienna, Austria

inferred← citeshttps://doi.org/10.3390/d17100671openalex-snapshot

Early Metabarcoding Detection of Eukaryotic Putative Pathogens Nearby Wastewater Effluents of Ría de Vigo (NW Spain)

inferred← citeshttps://doi.org/10.3390/foods11070915openalex-snapshot

Microbial Diversity and Contribution to the Formation of Volatile Compounds during Fine-Flavor Cacao Bean Fermentation

inferred← citeshttps://doi.org/10.3390/insects13050482openalex-snapshot

Protists in the Insect Rearing Industry: Benign Passengers or Potential Risk?

inferred← citeshttps://doi.org/10.70675/4c2e94a8z3acbz4d26z9ff5zc89deb06b498openalex-snapshot

Biodiversity of the marine ecosystem and carbon flux around Kerguelen (Southern Ocean) : role of small phytoplankton at the single cell level

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