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Acetobacteraceae in the honey bee gut comprise two distant clades with diverging metabolism and ecological niches

https://doi.org/10.1101/861260
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-642-30197-1_396openalex-snapshot
The Family Acetobacteraceae
inferredcites →https://doi.org/10.1007/978-4-431-55933-7_11openalex-snapshot
Central Carbon Metabolism and Respiration in Gluconobacter oxydans
inferredcites →https://doi.org/10.1007/978-4-431-55933-7_4openalex-snapshot
Acetic Acid Bacteria as Plant Growth Promoters
inferredcites →https://doi.org/10.1007/978-4-431-55933-7_7openalex-snapshot
Distribution, Evolution, and Physiology of Oxidative Fermentation
inferredcites →https://doi.org/10.1016/j.bbabio.2016.03.028openalex-snapshot
Exploring membrane respiratory chains
inferredcites →https://doi.org/10.1016/j.copbio.2017.08.007openalex-snapshot
Acetic acid bacteria in fermented foods and beverages
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2007.10.016openalex-snapshot
Acetic acid bacteria spoilage of bottled red wine—A review
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2007.11.077openalex-snapshot
Genera and species in acetic acid bacteria
inferredcites →https://doi.org/10.1016/j.jsb.2012.09.005openalex-snapshot
The C-terminal domain of the Uup protein is a DNA-binding coiled coil motif
inferredcites →https://doi.org/10.1016/j.mib.2017.12.009openalex-snapshot
Functional roles and metabolic niches in the honey bee gut microbiota
inferredcites →https://doi.org/10.1016/j.micres.2016.06.007openalex-snapshot
Royal Jelly: An ancient remedy with remarkable antibacterial properties
inferredcites →https://doi.org/10.1038/1961208a0openalex-snapshot
Quantitative Analysis of Sugars in Royal Jelly
inferredcites →https://doi.org/10.1038/ismej.2016.201openalex-snapshot
Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
inferredcites →https://doi.org/10.1038/nrmicro.2016.43openalex-snapshot
Gut microbial communities of social bees
inferredcites →https://doi.org/10.1038/s41396-019-0568-8openalex-snapshot
Gut microbiota structure differs between honeybees in winter and summer
inferredcites →https://doi.org/10.1038/s41467-019-08303-0openalex-snapshot
Genomic diversity landscape of the honey bee gut microbiota
inferredcites →https://doi.org/10.1046/j.1432-1327.1999.00696.xopenalex-snapshot
Expression of amylase and glucose oxidase in the hypopharyngeal gland with an age‐dependent role change of the worker honeybee (Apis mellifera L.)
inferredcites →https://doi.org/10.1051/apido/2010012openalex-snapshot
Nutrition and health in honey bees
inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
inferredcites →https://doi.org/10.1073/pnas.1619573114openalex-snapshot
Metabolic evolution and the self-organization of ecosystems
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp356openalex-snapshot
Reordering contigs of draft genomes using the Mauve Aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btq413openalex-snapshot
genoPlotR: comparative gene and genome visualization in R
inferredcites →https://doi.org/10.1093/bioinformatics/bts252openalex-snapshot
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/bioinformatics/btu014openalex-snapshot
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gbe/evaa183openalex-snapshot
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont
inferredcites →https://doi.org/10.1093/gbe/evu062openalex-snapshot
Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts
inferredcites →https://doi.org/10.1093/jee/tow012openalex-snapshot
Parasaccharibacter apium, gen. nov., sp. nov., Improves Honey Bee (Hymenoptera: Apidae) Resistance toNosema
inferredcites →https://doi.org/10.1093/molbev/msn146openalex-snapshot
Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkw929openalex-snapshot
IMG/M: integrated genome and metagenome comparative data analysis system
inferredcites →https://doi.org/10.1099/ijs.0.068049-0openalex-snapshot
Bombella intestini gen. nov., sp. nov., an acetic acid bacterium isolated from bumble bee crop
inferredcites →https://doi.org/10.1099/ijsem.0.000760openalex-snapshot
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
inferredcites →https://doi.org/10.1099/ijsem.0.001921openalex-snapshot
Bombella apis sp. nov., an acetic acid bacterium isolated from the midgut of a honey bee
inferredcites →https://doi.org/10.1101/009944openalex-snapshot
Phinch: An interactive, exploratory data visualization framework for –Omic datasets
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04959.xopenalex-snapshot
A simple and distinctive microbiota associated with honey bees and bumble bees
inferredcites →https://doi.org/10.1111/mec.12966openalex-snapshot
Hive‐stored pollen of honey bees: many lines of evidence are consistent with pollen preservation, not nutrient conversion
inferredcites →https://doi.org/10.1111/mec.13862openalex-snapshot
Diet‐related gut bacterial dysbiosis correlates with impaired development, increased mortality and Nosema disease in the honeybee (Apis mellifera)
inferredcites →https://doi.org/10.1126/sciadv.1600513openalex-snapshot
Dynamic microbiome evolution in social bees
inferredcites →https://doi.org/10.1126/science.1146498openalex-snapshot
A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder
inferredcites →https://doi.org/10.1126/science.1212782openalex-snapshot
Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling
inferredcites →https://doi.org/10.1128/aem.00301-08openalex-snapshot
Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis inDrosophila melanogaster
inferredcites →https://doi.org/10.1128/aem.00307-15openalex-snapshot
Development of the Honey Bee Gut Microbiome throughout the Queen-Rearing Process
inferredcites →https://doi.org/10.1128/aem.01336-10openalex-snapshot
Acetic Acid Bacteria, Newly Emerging Symbionts of Insects
inferredcites →https://doi.org/10.1128/aem.02043-14openalex-snapshot
Origin and Effect of Alpha 2.2 Acetobacteraceae in Honey Bee Larvae and Description of Parasaccharibacter apium gen. nov., sp. nov
inferredcites →https://doi.org/10.1128/aem.07810-11openalex-snapshot
Establishment of Characteristic Gut Bacteria during Development of the Honeybee Worker
inferredcites →https://doi.org/10.1128/genomea.00128-14openalex-snapshot
Draft Genome Sequence of Commensalibacter papalotli MX01, a Symbiont Identified from the Guts of Overwintering Monarch Butterflies
inferredcites →https://doi.org/10.1128/genomea.00165-18openalex-snapshot
Draft Genome Sequences of Four Parasaccharibacter apium Strains Isolated from Honey Bees
inferredcites →https://doi.org/10.1128/genomea.00744-17openalex-snapshot
Draft Genome Sequences of Saccharibacter sp. Strains 3.A.1 and M18 Isolated from Honey and a Honey Bee (Apis mellifera) Stomach
inferredcites →https://doi.org/10.1128/jb.00405-08openalex-snapshot
A Specialized Citric Acid Cycle Requiring Succinyl-Coenzyme A (CoA):Acetate CoA-Transferase (AarC) Confers Acetic Acid Resistance on the Acidophile Acetobacter aceti
inferredcites →https://doi.org/10.1128/jb.06669-11openalex-snapshot
Draft Genome Sequence of Commensalibacter intestini A911T, a Symbiotic Bacterium Isolated from Drosophila melanogaster Intestine
inferredcites →https://doi.org/10.1128/mra.01459-18openalex-snapshot
Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees
inferredcites →https://doi.org/10.1186/s12864-019-5844-5openalex-snapshot
Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae
inferredcites →https://doi.org/10.1186/s40168-018-0489-1openalex-snapshot
The queen’s gut refines with age: longevity phenotypes in a social insect model
inferredcites →https://doi.org/10.1371/journal.pbio.2003467openalex-snapshot
Disentangling metabolic functions of bacteria in the honey bee gut
inferredcites →https://doi.org/10.1371/journal.pone.0036393openalex-snapshot
Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees
inferredcites →https://doi.org/10.1371/journal.pone.0072106openalex-snapshot
Microbial Gut Diversity of Africanized and European Honey Bee Larval Instars
inferredcites →https://doi.org/10.1371/journal.pone.0123911openalex-snapshot
Caste-Specific Differences in Hindgut Microbial Communities of Honey Bees (Apis mellifera)
inferredcites →https://doi.org/10.1371/journal.pone.0165611openalex-snapshot
Whole-Genome Sequence Analysis of Bombella intestini LMG 28161T, a Novel Acetic Acid Bacterium Isolated from the Crop of a Red-Tailed Bumble Bee, Bombus lapidarius
inferredcites →https://doi.org/10.1371/journal.pone.0200527openalex-snapshot
Modulation of the honey bee queen microbiota: Effects of early social contact
inferredcites →https://doi.org/10.7554/elife.42535openalex-snapshot
An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-16-0223-8_9openalex-snapshot
Honeybee Gut: Reservoir of Probiotic Bacteria
inferred← citeshttps://doi.org/10.1007/s00203-023-03416-zopenalex-snapshot
The promise of probiotics in honeybee health and disease management
inferred← citeshttps://doi.org/10.1007/s00248-023-02222-wopenalex-snapshot
Hive Transplantation Has Minimal Impact on the Core Gut Microbiome of the Australian Stingless Bee, Tetragonula carbonaria
inferred← citeshttps://doi.org/10.1007/s10482-021-01676-7openalex-snapshot
Genome analysis suggests the bacterial family Acetobacteraceae is a source of undiscovered specialized metabolites
inferred← citeshttps://doi.org/10.1016/j.cofs.2023.101122openalex-snapshot
Associated bacterial microbiota of honey and related products from stingless bees as novel sources of bioactive compounds for biotechnological applications
inferred← citeshttps://doi.org/10.1016/j.etap.2025.104704openalex-snapshot
Polystyrene microplastics reduce honeybee survival by disrupting gut microbiota and metabolism
inferred← citeshttps://doi.org/10.1038/s41522-021-00212-9openalex-snapshot
Compartmentalization of bacterial and fungal microbiomes in the gut of adult honeybees
inferred← citeshttps://doi.org/10.1093/femsec/fiae063openalex-snapshot
Melipona stingless bees and honey microbiota reveal the diversity, composition, and modes of symbionts transmission
inferred← citeshttps://doi.org/10.1099/ijsem.0.004633openalex-snapshot
Bombella favorum sp. nov. and Bombella mellum sp. nov., two novel species isolated from the honeycombs of Apis mellifera
inferred← citeshttps://doi.org/10.1099/ijsem.0.004666openalex-snapshot
Entomobacter blattae gen. nov., sp. nov., a new member of the Acetobacteraceae isolated from the gut of the cockroach Gromphadorhina portentosa
inferred← citeshttps://doi.org/10.1099/ijsem.0.005927openalex-snapshot
Bombella pluederhausensis sp. nov., Bombella pollinis sp. nov., Bombella saccharophila sp. nov. and Bombella dulcis sp. nov., four Bombella species isolated from the environment of the western honey bee Apis mellifera
inferred← citeshttps://doi.org/10.1099/ijsem.0.006385openalex-snapshot
Commensalibacter nepenthis sp. nov. and Commensalibacter oyaizuii sp. nov., from fluid in a Nepenthes pitcher cup and a butterfly (Junonia lemonias) in Thailand
inferred← citeshttps://doi.org/10.1111/1744-7917.13365openalex-snapshot
A review on recent taxonomic updates of gut bacteria associated with social bees, with a curated genomic reference database
inferred← citeshttps://doi.org/10.1111/jen.13422openalex-snapshot
Supplementary Diets Impact the Abundance of Core Bacteria in the Gut of a Managed Stingless Bee but Not Its Fat Body Size
inferred← citeshttps://doi.org/10.1128/msystems.00082-21openalex-snapshot
BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities
inferred← citeshttps://doi.org/10.1128/msystems.00166-25openalex-snapshot
Evolutionary trends in Bombella apis CRISPR-Cas systems
inferred← citeshttps://doi.org/10.1128/spectrum.00383-22openalex-snapshot
Early Queen Development in Honey Bees: Social Context and Queen Breeder Source Affect Gut Microbiota and Associated Metabolism
inferred← citeshttps://doi.org/10.1186/s42523-023-00248-6openalex-snapshot
A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont
inferred← citeshttps://doi.org/10.13005/bbra/2870openalex-snapshot
Gut Microbiome of Two Different Honeybee Workers Subspecies In Saudi Arabia.
inferred← citeshttps://doi.org/10.3390/microorganisms10051058openalex-snapshot
Comparative Genomics of Acetic Acid Bacteria within the Genus Bombella in Light of Beehive Habitat Adaptation
inferred← citeshttps://doi.org/10.5204/thesis.eprints.212693openalex-snapshot
Phylosymbiosis and the microbiome of the native Australian stingless bee Tetragonula carbonaria
inferred← citeshttps://doi.org/10.70675/ab752c07z2fa2z4079zadafz2b08abc5401fopenalex-snapshot
Impacts et interactions de la microsporidie Nosema cerenae et d'insecticides neurotoxiques sur la santé de l'abeille domestique, Apis mellifera
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