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Demographic history and genomics of local adaptation in blue tit populations

https://doi.org/10.1101/864975
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Outgoing claims: the papers this work cites, builds on, or argues with.

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The Genomic Complexity of a Large Inversion in Great Tits
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Glacial history and colonization of Europe by the blue tit Parus caeruleus
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Local adaptation of timing of reproduction: females are in the driver's seat
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The coupling hypothesis: why genome scans may fail to map local adaptation genes
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Testing for microevolution in body size in three blue tit populations
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A disproportionate role for mt DNA in D obzhansky– M uller incompatibilities?
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Pervasive selection or is it…? why are F ST outliers sometimes so frequent?
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Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population
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Isolation by environment
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The consequences of not accounting for background selection in demographic inference
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Genomic resources and their influence on the detection of the signal of positive selection in genome scans
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Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes
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Population genomic footprints of fine‐scale differentiation between habitats in Mediterranean blue tits
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Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
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Genomics of adaptive divergence with chromosome‐scale heterogeneity in crossover rate
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The Fine-Scale Structure of Recombination Rate Variation in the Human Genome
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A beak size locus in Darwin’s finches facilitated character displacement during a drought
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The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish
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Recent natural selection causes adaptive evolution of an avian polygenic trait
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Preservation of avian blood and tissue samples for DNA analyses
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Divergence with Gene Flow: Models and Data
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Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
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Defining window-boundaries for genomic analyses using smoothing spline techniques
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A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation
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How and Why Chromosome Inversions Evolve
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Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
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Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
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Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
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Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis
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Chromosome Inversions, Local Adaptation and Speciation
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A Gene-Based Genetic Linkage Map of the Collared Flycatcher (Ficedula albicollis) Reveals Extensive Synteny and Gene-Order Conservation During 100 Million Years of Avian Evolution
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A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
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Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models
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Effects of Linked Selective Sweeps on Demographic Inference and Model Selection
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Local PCA Shows How the Effect of Population Structure Differs Along the Genome
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A Thirty-Year Study of Phenotypic and Genetic Variation of Blue Tits in Mediterranean Habitat Mosaics
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Poppr : an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
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