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The effect of diet and environmental temperature on the faecal microbiota of farmed Tasmanian Atlantic Salmon (Salmo salarL.)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Identification of human enterovirulent Escherichia coli strains by multiplex PCR
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Molecular Analysis of Microbiota Along the Digestive Tract of Juvenile Atlantic Salmon (Salmo salar L.)
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Histological changes in intestine of Atlantic salmon (Salmo salar L.) following in vitro exposure to pathogenic and probiotic bacterial strains
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Lactobacillus casei strain GG reverses increased intestinal permeability induced by cow milk in suckling rats
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Comparison of the nucleotide sequences of the genes for the thermostable direct hemolysin and the thermolabile hemolysin from Vibrio parahaemolyticus
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Comparison of conventional and molecular techniques to investigate the intestinal microflora of rainbow trout (Oncorhynchus mykiss)
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Occurrence of Plesiomonas shigelloides in displayed portions of saltwater fish determined by a PCR assay based on the hugA gene
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Multiplex primer-extension assay for identification of six pathogenic vibrios
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Investigation of putative CDT gene in Escherichia coli isolates from pigs with diarrhea
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Distribution of the cytolethal distending toxin A gene (cdtA) among species of Shigella and Vibrio, and cloning and sequencing of the cdt gene from Shigella dysenteriae
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Metabolic fingerprinting and fermentative capacity of the intestinal flora of pigs during pre‐ and post‐weaning periods
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Distribution of virulence genes in Aeromonas spp. isolated from Sardinian waters and from patients with diarrhoea
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Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)
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PCR differentiation of Escherichia coli from other Gram-negative bacteria using primers derived from the nucleotide sequences flanking the gene encoding the universal stress protein
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A diffusible cytotoxin of Haemophilus ducreyi
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Characteristics of the gastrointestinal microbial communities, with special reference to the chicken
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Extended Virulence Genotypes of Escherichia coli Strains from Patients with Urosepsis in Relation to Phylogeny and Host Compromise
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The pathogenicity of Vibrio parahaemolyticus and the role of the thermostable direct haemolysin and related haemolysins
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Characterization of a new thermostable direct haemolysin produced by a Kanagawa-phenomenon-negative clinical isolate of Vibrio parahaemolyticus
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Displacement of bacterial pathogens from mucus and Caco-2 cell surface by lactobacilli
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Intestinal microflora of salmonids: a review
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The effect of dietary inulin on aerobic bacteria associated with hindgut of Arctic charr (Salvelinus alpinus L.)
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Lactic acid bacteria vs. pathogens in the gastrointestinal tract of fish: a review
inferredcites →https://doi.org/10.1111/j.1365-2109.2011.02805.xopenalex-snapshot
Seasonal variations in the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)
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A probiotic strain of Vibrio alginolyticus effective in reducing diseases caused by Aeromonas salmonicida, Vibrio anguillarum and Vibrio ordalii
inferredcites →https://doi.org/10.1111/j.1365-2761.2004.00569.xopenalex-snapshot
Salmonid gill bacteria and their relationship to amoebic gill disease
inferredcites →https://doi.org/10.1111/j.1751-0813.2005.tb12745.xopenalex-snapshot
Rapid identification of virulence genes in enterotoxigenic Escherichia coli isolates associated with diarrhoea in Queensland piggeries
inferredcites →https://doi.org/10.1128/aac.00259-06openalex-snapshot
Isolation of a Lactobacillus salivarius Strain and Purification of Its Bacteriocin, Which Is Inhibitory to Campylobacter jejuni in the Chicken Gastrointestinal System
inferredcites →https://doi.org/10.1128/aem.01357-09openalex-snapshot
Multiplex PCR Method for Detection of Three Aeromonas Enterotoxin Genes
inferredcites →https://doi.org/10.1128/aem.65.12.5293-5302.1999openalex-snapshot
PCR Detection, Characterization, and Distribution of Virulence Genes in Aeromonas spp
inferredcites →https://doi.org/10.1128/aem.67.6.2421-2429.2001openalex-snapshot
Genotypes Associated with Virulence in Environmental Isolates of Vibrio cholerae
inferredcites →https://doi.org/10.1128/iai.64.4.1441-1445.1996openalex-snapshot
Detection of the enteroaggregative Escherichia coli heat-stable enterotoxin 1 gene sequences in enterotoxigenic E. coli strains pathogenic for humans
inferredcites →https://doi.org/10.1128/iai.65.2.428-433.1997openalex-snapshot
Examination of diarrheagenicity of cytolethal distending toxin: suckling mouse response to the products of the cdtABC genes of Shigella dysenteriae
inferredcites →https://doi.org/10.1128/iai.67.3.1227-1237.1999openalex-snapshot
Identification of a Cytolethal Distending Toxin Gene Locus and Features of a Virulence-Associated Region inActinobacillus actinomycetemcomitans
inferredcites →https://doi.org/10.1128/iai.68.1.184-191.2000openalex-snapshot
Cytolethal Distending Toxin Sequence and Activity in the Enterohepatic PathogenHelicobacter hepaticus
inferredcites →https://doi.org/10.1128/jb.162.2.510-515.1985openalex-snapshot
Cloning and expression in Escherichia coli of Vibrio parahaemolyticus thermostable direct hemolysin and thermolabile hemolysin genes
inferredcites →https://doi.org/10.1128/jb.162.2.558-564.1985openalex-snapshot
Nucleotide sequence of the thermostable direct hemolysin gene of Vibrio parahaemolyticus
inferredcites →https://doi.org/10.1128/jb.88.5.1524-1525.1964openalex-snapshot
SELECTIVE MEDIUM FOR ISOLATION OF MIMA AND HERELLEA ORGANISMS
inferredcites →https://doi.org/10.1128/jcm.38.11.4108-4113.2000openalex-snapshot
PCR Detection of Escherichia coli O157:H7 Directly from Stools: Evaluation of Commercial Extraction Methods for Purifying Fecal DNA
inferredcites →https://doi.org/10.1128/jcm.40.1.271-274.2002openalex-snapshot
Direct Detection and Characterization of Shiga Toxigenic Escherichia coli by Multiplex PCR for stx 1 , stx 2 , eae , ehxA , and saa
inferredcites →https://doi.org/10.1128/jcm.42.5.2074-2079.2004openalex-snapshot
PCR-Based Assay for Differentiation of Pseudomonas aeruginosa from Other Pseudomonas Species Recovered from Cystic Fibrosis Patients
inferredcites →https://doi.org/10.1139/f79-169openalex-snapshot
Obligate Anaerobic Bacteria in the Gastrointestinal Microflora of the Grass Carp (Ctenopharyngodon idella), Goldfish (Carassius auratus), and Rainbow Trout (Salmo gairdneri)
inferredcites →https://doi.org/10.1186/1476-0711-3-21openalex-snapshot
Early detection of Pseudomonas aeruginosa – comparison of conventional versus molecular (PCR) detection directly from adult patients with cystic fibrosis (CF)
inferredcites →https://doi.org/10.2307/3225339openalex-snapshot
Numerical Taxonomy: The Principles and Practice of Numerical Classification
inferredcites →https://doi.org/10.3109/08910609209141592openalex-snapshot
Metabolic Capacity and Pathogenic Properties of the Intestinal Coliforms in Patients with Ulcerative Colitis
inferredcites →https://doi.org/10.3402/mehd.v5i5.7857openalex-snapshot
Metabolic Capacity and Pathogenic Properties of the Intestinal Coliforms in Patients with Ulcerative Colitis
inferredcites →https://doi.org/10.3923/biotech.2008.124.128openalex-snapshot
Isolation of Bacteriocin Producing Lactic Acid Bacteria from Fish Gut and Probiotic Activity Against Common Fresh Water Fish Pathogen Aeromonas hydrophila

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1007/s00248-015-0728-yopenalex-snapshot
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Dietary n-6/n-3 LC-PUFA ratio, temperature and time interactions on nutrients and fatty acids digestibility in Atlantic salmon
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2015.06.044openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.740174openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742141openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cbpa.2023.111412openalex-snapshot
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Formalin-fixed paraffin-embedded tissues for microbiome analysis in rainbow trout (Oncorhynchus mykiss)
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inferred← citeshttps://doi.org/10.1038/s41598-020-78441-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-024-54519-6openalex-snapshot
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Extensive fecal cast production and growth of Vibrionaceae in heat-stressed Atlantic salmon post-smolts
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The Atlantic salmon’s stress- and immune-related transcriptional responses to moderate hypoxia, an incremental temperature increase, and these challenges combined
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Heat stress impacts the gut microbiome of Atlantic salmon by promoting growth of Vibrionaceae and is associated with extensive cast production
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inferred← citeshttps://doi.org/10.1111/eva.13027openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/raq.12191openalex-snapshot
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Commensal bacteria‐immunity crosstalk shapes mucosal homeostasis in teleost fish
inferred← citeshttps://doi.org/10.1111/raq.70212openalex-snapshot
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inferred← citeshttps://doi.org/10.1128/aem.02788-19openalex-snapshot
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inferred← citeshttps://doi.org/10.1128/spectrum.00568-24openalex-snapshot
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inferred← citeshttps://doi.org/10.1128/spectrum.02943-23openalex-snapshot
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inferred← citeshttps://doi.org/10.1134/s0032945221060060openalex-snapshot
Variability of Composition of Microbiota of Gastrointestinal Tract of Perch Perca fluviatilis and Prussian Carp Carassius gibelio During the Vegetative Season
inferred← citeshttps://doi.org/10.1186/s12866-022-02496-zopenalex-snapshot
The gut bacterial microbiome of Nile tilapia (Oreochromis niloticus) from lakes across an altitudinal gradient
inferred← citeshttps://doi.org/10.1186/s12866-023-03086-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12917-024-04125-5openalex-snapshot
Association of microbial community structure with gill disease in marine-stage farmed Atlantic salmon (Salmo salar); a yearlong study
inferred← citeshttps://doi.org/10.1186/s40168-024-01799-9openalex-snapshot
Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures
inferred← citeshttps://doi.org/10.1186/s40793-025-00687-5openalex-snapshot
Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh
inferred← citeshttps://doi.org/10.1186/s42523-022-00180-1openalex-snapshot
Diversity and structure of sparids external microbiota (Teleostei) and its link with monogenean ectoparasites
inferred← citeshttps://doi.org/10.1186/s42523-023-00269-1openalex-snapshot
Exploring gut microbiota in adult Atlantic salmon (Salmo salar L.): Associations with gut health and dietary prebiotics
inferred← citeshttps://doi.org/10.1186/s42523-025-00388-xopenalex-snapshot
Interactions between gilthead seabream intestinal transcriptome and microbiota upon Enteromyxum leei infection: a multi–omic approach
inferred← citeshttps://doi.org/10.1186/s42523-025-00417-9openalex-snapshot
Temperature-dependent shifts in gut microbiota and metabolome of olive flounder (Paralichthys olivaceus): implications for cold-water aquaculture expansion and probiotic applications
inferred← citeshttps://doi.org/10.12691/jaem-2-6-4openalex-snapshot
The Impact of Diet on the Gut Microbiota of Tasmanian Atlantic Salmon ( Salmo Salar L.) Using a Semi-Continuous Fermenter Model
inferred← citeshttps://doi.org/10.13140/rg.2.2.18586.13761openalex-snapshot
Effects of feeding yeasts on blood physiology and gut microbiota of rainbow trout
inferred← citeshttps://doi.org/10.1371/journal.pone.0143622openalex-snapshot
Arachidonic Acid and Eicosapentaenoic Acid Metabolism in Juvenile Atlantic Salmon as Affected by Water Temperature
inferred← citeshttps://doi.org/10.21203/rs.3.rs-586887/v1openalex-snapshot
Fishing for the Bacteriome of Tropical Tuna
inferred← citeshttps://doi.org/10.22215/etd/2023-15619openalex-snapshot
The Gut Microbiome and its Relationship to Migratory Behaviour and Fate in Wild Fishes
inferred← citeshttps://doi.org/10.22541/au.160253843.32636436/v1openalex-snapshot
Comparative microbial community analysis of fur seals and salmon aquaculture in Tasmania
inferred← citeshttps://doi.org/10.33640/2405-609x.3162openalex-snapshot
Seasonal variation of microbiota in Shank Acanthopagrus latus living in both brackish and fresh water
inferred← citeshttps://doi.org/10.3389/fmars.2021.725899openalex-snapshot
Modulation of Antioxidant Enzymes, Heat Shock Protein, and Intestinal Microbiota of Large Yellow Croaker (Larimichthys crocea) Under Acute Cold Stress
inferred← citeshttps://doi.org/10.3389/fmars.2022.1027621openalex-snapshot
Temperature modulation alters the gut and skin microbial profiles of chum salmon (Oncorhynchus keta)
inferred← citeshttps://doi.org/10.3389/fmars.2022.811532openalex-snapshot
Can Stomach Content and Microbiomes of Tuna Provide Near Real-Time Detection of Ecosystem Composition in the Pacific Ocean?
inferred← citeshttps://doi.org/10.3389/fmars.2024.1495373openalex-snapshot
A fishy gut feeling – current knowledge on gut microbiota in teleosts
inferred← citeshttps://doi.org/10.3389/fmars.2026.1847546openalex-snapshot
Dietary lipid utilisation under different thermal conditions in flathead grey mullet (Mugil cephalus)
inferred← citeshttps://doi.org/10.3389/fmicb.2018.00873openalex-snapshot
The Gut Microbiota of Marine Fish
inferred← citeshttps://doi.org/10.3389/fmicb.2018.01818openalex-snapshot
Lactic Acid Bacteria in Finfish—An Update
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00384openalex-snapshot
The Effects of Temperature on Animal Gut Microbiomes
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00699openalex-snapshot
Analysis of the Intestinal Flora in Male Versus Female Swamp Eels (Monopterus albus)
inferred← citeshttps://doi.org/10.3389/fmicb.2020.01332openalex-snapshot
Co-modulation of Liver Genes and Intestinal Microbiome of Largemouth Bass Larvae (Micropterus salmoides) During Weaning
inferred← citeshttps://doi.org/10.3389/fmicb.2020.565267openalex-snapshot
Relationship Between the Fatty Acid Profiles and Gut Bacterial Communities of the Chinese Mitten Crab (Eriocheir sinensis) From Ecologically Different Habitats
inferred← citeshttps://doi.org/10.3389/fmicb.2021.567408openalex-snapshot
Microbiome Composition and Function in Aquatic Vertebrates: Small Organisms Making Big Impacts on Aquatic Animal Health
inferred← citeshttps://doi.org/10.3389/fmicb.2022.755369openalex-snapshot
Heat Stress Decreases Intestinal Physiological Function and Facilitates the Proliferation of Harmful Intestinal Microbiota in Sturgeons
inferred← citeshttps://doi.org/10.3389/fmicb.2022.847167openalex-snapshot
The Effect of Dietary Lactic Acid Bacteria on Intestinal Microbiota and Immune Responses of Crucian Carp (Carassius auratus) Under Water Temperature Decrease
inferred← citeshttps://doi.org/10.3389/fmicb.2022.906299openalex-snapshot
Host Species Influence the Gut Microbiota of Endemic Cold-Water Fish in Upper Yangtze River
inferred← citeshttps://doi.org/10.3389/fmicb.2022.963456openalex-snapshot
Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast)
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1415931openalex-snapshot
Deterministic processes dominate microbial assembly mechanisms in the gut microbiota of cold-water fish between summer and winter
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1739391openalex-snapshot
Temporal microbiome dynamics and fish health-associated dysbiosis in freshwater aquarium systems: a case study from River Wonders Singapore
inferred← citeshttps://doi.org/10.3389/fphys.2022.871045openalex-snapshot
Tenets in Microbial Endocrinology: A New Vista in Teleost Reproduction
inferred← citeshttps://doi.org/10.3389/fphys.2022.985046openalex-snapshot
Energy consumption and intestinal microbiome disorders of yellow catfish (Pelteobagrus fulvidraco) under cold stress
inferred← citeshttps://doi.org/10.3389/fsci.2025.1575468openalex-snapshot
Harnessing agri-food system microbiomes for sustainability and human health
inferred← citeshttps://doi.org/10.3390/antiox12122128openalex-snapshot
Physiological Response of Spotted Seabass (Lateolabrax maculatus) to Different Dietary Available Phosphorus Levels and Water Temperature: Changes in Growth, Lipid Metabolism, Antioxidant Status and Intestinal Microbiota
inferred← citeshttps://doi.org/10.3390/hydrobiology5030019openalex-snapshot
Short-Term Captivity Restructures the Gut Microbiome of Fundulus heteroclitus
inferred← citeshttps://doi.org/10.3390/microorganisms11010211openalex-snapshot
The Development of the Bacterial Community of Brown Trout (Salmo trutta) during Ontogeny
inferred← citeshttps://doi.org/10.3390/microorganisms8081244openalex-snapshot
Assessing the Pyloric Caeca and Distal Gut Microbiota Correlation with Flesh Color in Atlantic Salmon (Salmo salar L., 1758)
inferred← citeshttps://doi.org/10.3390/microorganisms9010005openalex-snapshot
Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos)
inferred← citeshttps://doi.org/10.3390/oceans4020014openalex-snapshot
Comparative Microbial Community Analysis of Fur Seals and Aquaculture Salmon Gut Microbiomes in Tasmania
inferred← citeshttps://doi.org/10.4194/1303-2712-v18_1_22openalex-snapshot
inferred← citeshttps://doi.org/10.6084/m9.figshare.19593926openalex-snapshot
Additional file 1 of Diversity and structure of sparids external microbiota (Teleostei) and its link with monogenean ectoparasites
inferred← citeshttps://doi.org/10.6084/m9.figshare.24580362openalex-snapshot
Additional file 1 of Host-microbiota-parasite interactions in two wild sparid fish species, Diplodus annularis and Oblada melanura (Teleostei, Sparidae) over a year: a pilot study
inferred← citeshttps://doi.org/10.70675/1afaaa1fz2b3bz4487za80fz2d5c8e9a1defopenalex-snapshot
Spécificité, diversité et évolution des communautés ectosymbiotiques chez les sparidés (Teleostei)
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