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AN EVALUATION OF THE HYBRID SPECIATION HYPOTHESIS FORXIPHOPHORUS CLEMENCIAEBASED ON WHOLE GENOME SEQUENCES
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Improved Protocols for the Illumina Genome Analyzer Sequencing System
inferredcites →https://doi.org/10.1006/anbe.1995.0252openalex-snapshot
A further examination of a pre-existing bias favouring a sword in the genusXiphophorus
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Olfactory preferences in two strains of wild mice,Mus musculus musculusandMus musculus domesticus, and their hybrids
inferredcites →https://doi.org/10.1007/978-1-4615-2381-9_7openalex-snapshot
Speciation and Hybridization
inferredcites →https://doi.org/10.1007/s10709-010-9530-4openalex-snapshot
Hybrid speciation in Heliconius butterflies? A review and critique of the evidence
inferredcites →https://doi.org/10.1016/j.anbehav.2004.06.032openalex-snapshot
Genetics of female mate discrimination of heterospecific males in Nasonia (Hymenoptera, Pteromalidae)
inferredcites →https://doi.org/10.1016/j.cbpc.2011.03.012openalex-snapshot
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F1 interspecies hybrids
inferredcites →https://doi.org/10.1016/j.cub.2011.06.043openalex-snapshot
Adaptive Introgression of Anticoagulant Rodent Poison Resistance by Hybridization between Old World Mice
inferredcites →https://doi.org/10.1016/j.tig.2009.12.001openalex-snapshot
Understanding the onset of hybrid speciation
inferredcites →https://doi.org/10.1016/j.tig.2010.05.003openalex-snapshot
Evolution of the mutation rate
inferredcites →https://doi.org/10.1016/j.tree.2005.02.010openalex-snapshot
Hybridization as an invasion of the genome
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.ympev.2008.08.008openalex-snapshot
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences
inferredcites →https://doi.org/10.1023/a:1016685509431openalex-snapshot
Cytonuclear genetic signatures of hybridization phenomena: Rationale, utility, and empirical examples from fishes and other aquatic animals
inferredcites →https://doi.org/10.1038/368539a0openalex-snapshot
Recurrent origin of a sexually selected trait in Xiphophorus fishes inferred from a molecular phylogeny
inferredcites →https://doi.org/10.1038/375313a0openalex-snapshot
Hybrid speciation accompanied by genomic reorganization in wild sunflowers
inferredcites →https://doi.org/10.1038/hdy.2008.20openalex-snapshot
Variation in mate preference across a house mouse hybrid zone
inferredcites →https://doi.org/10.1038/nature03800openalex-snapshot
Host shift to an invasive plant triggers rapid animal hybrid speciation
inferredcites →https://doi.org/10.1038/nature04738openalex-snapshot
Speciation by hybridization in Heliconius butterflies
inferredcites →https://doi.org/10.1038/nature11041openalex-snapshot
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
inferredcites →https://doi.org/10.1038/nature11128openalex-snapshot
The bonobo genome compared with the chimpanzee and human genomes
inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01438.xopenalex-snapshot
Speciation via introgressive hybridization in East African cichlids?
inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00948.xopenalex-snapshot
Advances in the study of polyploidy sincePlant speciation
inferredcites →https://doi.org/10.1073/pnas.1201403109openalex-snapshot
Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species
inferredcites →https://doi.org/10.1073/pnas.91.11.5066openalex-snapshot
Cytonuclear genetics of experimental fish hybrid zones inside Biosphere 2.
inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot
An Approximately Unbiased Test of Phylogenetic Tree Selection
inferredcites →https://doi.org/10.1086/663684openalex-snapshot
Hybridization Alters Early Life-History Traits and Increases Plant Colonization Success in a Novel Region
inferredcites →https://doi.org/10.1089/zeb.2006.3.271openalex-snapshot
The Genus Xiphophorus in Mexico and Central America
inferredcites →https://doi.org/10.1093/acprof:oso/9780199229031.001.0001openalex-snapshot
Evolution through Genetic Exchange
inferredcites →https://doi.org/10.1093/beheco/arr119openalex-snapshot
Encounter rates with conspecific males influence female mate choice in a naturally hybridizing fish
inferredcites →https://doi.org/10.1093/bib/bbn017openalex-snapshot
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
inferredcites →https://doi.org/10.1093/bioinformatics/13.3.235openalex-snapshot
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1246openalex-snapshot
CONSEL: for assessing the confidence of phylogenetic tree selection
inferredcites →https://doi.org/10.1093/bioinformatics/18.2.337openalex-snapshot
Generating samples under a Wright–Fisher neutral model of genetic variation
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btl622openalex-snapshot
msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/genetics/44.5.857openalex-snapshot
THE BREAKUP OF INITIAL LINKAGE BLOCKS UNDER SELECTED MATING SYSTEMS
inferredcites →https://doi.org/10.1093/molbev/msn172openalex-snapshot
Subdivision in an Ancestral Species Creates Asymmetry in Gene Trees
inferredcites →https://doi.org/10.1093/sysbio/syp055openalex-snapshot
Identifying Hybridization Events in the Presence of Coalescence via Model Selection
inferredcites →https://doi.org/10.1098/rspb.2005.3231openalex-snapshot
An invasive lineage of sculpins, Cottus sp. (Pisces, Teleostei) in the Rhine with new habitat adaptations has originated from hybridization between old phylogeographic groups
inferredcites →https://doi.org/10.1098/rspb.2005.3406openalex-snapshot
Alteration of the chemical environment disrupts communication in a freshwater fish
inferredcites →https://doi.org/10.1098/rstb.2008.0065openalex-snapshot
Hybrid trait speciation and Heliconius butterflies
inferredcites →https://doi.org/10.1098/rstb.2008.0081openalex-snapshot
Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation
inferredcites →https://doi.org/10.1101/gr.107615.110openalex-snapshot
High-throughput sequencing of complete human mtDNA genomes from the Philippines
inferredcites →https://doi.org/10.1101/gr.111120.110openalex-snapshot
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
inferredcites →https://doi.org/10.1101/gr.114751.110openalex-snapshot
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
inferredcites →https://doi.org/10.1101/gr.6.4.280openalex-snapshot
Genetic mapping in Xiphophorus hybrid fish: assignment of 43 AP-PCR/RAPD and isozyme markers to multipoint linkage groups.
inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb00655.xopenalex-snapshot
HYBRID POPULATIONS SELECTIVELY FILTER GENE INTROGRESSION BETWEEN SPECIES
inferredcites →https://doi.org/10.1111/j.1096-3642.2012.00843.xopenalex-snapshot
Ecology and Evolution of Poeciliid Fishes
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02810.xopenalex-snapshot
Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae ) driven by sexual selection
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04949.xopenalex-snapshot
Replicated hybrid zones of Xiphophorus swordtails along an elevational gradient
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05571.xopenalex-snapshot
A phylogeographic investigation of the hybrid origin of a species of swordtail fish from Mexico
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03234.xopenalex-snapshot
Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus
inferredcites →https://doi.org/10.1111/j.1558-5646.1999.tb05382.xopenalex-snapshot
INTERSPECIFIC RECOGNITION AND DISCRIMINATION BASED UPON OLFACTORY CUES IN NORTHERN SWORDTAILS
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00366.xopenalex-snapshot
HYBRID ZONE ORIGINS, SPECIES BOUNDARIES, AND THE EVOLUTION OF WING-PATTERN DIVERSITY IN A POLYTYPIC SPECIES COMPLEX OF NORTH AMERICAN ADMIRAL BUTTERFLIES (NYMPHALIDAE: LIMENITIS)
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00901.xopenalex-snapshot
GEOGRAPHIC AND TEMPORAL ASPECTS OF MITOCHONDRIAL REPLACEMENT INNOTHONOTUSDARTERS (TELEOSTEI: PERCIDAE: ETHEOSTOMATINAE).
inferredcites →https://doi.org/10.1126/science.1086949openalex-snapshot
Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization
inferredcites →https://doi.org/10.1126/science.1135875openalex-snapshot
Homoploid Hybrid Speciation in an Extreme Habitat
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.250.4982.808openalex-snapshot
Female Preference Predates the Evolution of the Sword in Swordtail Fish
inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.593openalex-snapshot
The Role of Hybridization and Introgression in the Diversification of Animals
inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132421openalex-snapshot
Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.091704.175513openalex-snapshot
The Population Biology of Mitochondrial DNA and Its Phylogenetic Implications
inferredcites →https://doi.org/10.1146/annurev.es.24.110193.002513openalex-snapshot
Cytonuclear Disequilibria in Hybrid Zones
inferredcites →https://doi.org/10.1186/1471-2105-5-1openalex-snapshot
PyEvolve: a toolkit for statistical modelling of molecular evolution
inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
inferredcites →https://doi.org/10.1371/journal.pgen.0020173openalex-snapshot
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pgen.1000164openalex-snapshot
Identification and Functional Analysis of Light-Responsive Unique Genes and Gene Family Members in Rice
inferredcites →https://doi.org/10.1371/journal.pgen.1000168openalex-snapshot
Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection
inferredcites →https://doi.org/10.1371/journal.pgen.1000930openalex-snapshot
Genetic Evidence for Hybrid Trait Speciation in Heliconius Butterflies
inferredcites →https://doi.org/10.1371/journal.pgen.1001183openalex-snapshot
Common Genetic Variants and Modification of Penetrance of BRCA2-Associated Breast Cancer
inferredcites →https://doi.org/10.1371/journal.pgen.1002274openalex-snapshot
Sex Chromosome Mosaicism and Hybrid Speciation among Tiger Swallowtail Butterflies
inferredcites →https://doi.org/10.1371/journal.pgen.1002313openalex-snapshot
Genetic Determinants of Serum Testosterone Concentrations in Men
inferredcites →https://doi.org/10.1371/journal.pone.0034802openalex-snapshot
An Indirect Cue of Predation Risk Counteracts Female Preference for Conspecifics in a Naturally Hybridizing Fish Xiphophorus birchmanni
inferredcites →https://doi.org/10.1534/genetics.103.019349openalex-snapshot
A Microsatellite Genetic Linkage Map for XiphophorusSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY258640, AY258896.
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.4137/ebo.s2242openalex-snapshot
A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct phylogenies
inferredcites →https://doi.org/10.7208/chicago/9780226222769.001.0001openalex-snapshot
Ecology and Evolution of Poeciliid Fishes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.3670.2.4zenodo-depositor-declared
A new barbeled goby from south China (Teleostei: Gobiidae)
inferred← citeshttps://doi.org/10.1007/978-3-030-49732-3_11openalex-snapshot
Effectiveness of Conventional Crop Improvement Strategies vs. Omics
inferred← citeshttps://doi.org/10.1007/s10499-024-01425-3openalex-snapshot
Microsatellite and mtDNA-based exploration of inter-generic hybridization and patterns of genetic diversity in major carps of Punjab, Pakistan
inferred← citeshttps://doi.org/10.1038/s41467-024-50852-6openalex-snapshot
Phylogenomic analyses of all species of swordtail fishes (genus Xiphophorus) show that hybridization preceded speciation
inferred← citeshttps://doi.org/10.1089/zeb.2013.0939openalex-snapshot
Pigmentation in Xiphophorus : An Emerging System in Ecological and Evolutionary Genetics
inferred← citeshttps://doi.org/10.1093/biolinnean/blx017openalex-snapshot
Genomics of introgression in the Chinese horseshoe bat (Rhinolophus sinicus) revealed by transcriptome sequencing
inferred← citeshttps://doi.org/10.1093/evolut/qpae124openalex-snapshot
Recurrent evolution of small body size and loss of the sword ornament in Northern swordtail fish
inferred← citeshttps://doi.org/10.1093/jhered/esag033openalex-snapshot
Adaptive introgression and incompatibility shape interspecific hybrid genomes in ornamental and feral Xiphophorus strains
inferred← citeshttps://doi.org/10.1093/jhered/esu066openalex-snapshot
Multiple Mating and Reproductive Skew in Parental and Introgressed Females of the Live-Bearing Fish Xiphophorus Birchmanni
inferred← citeshttps://doi.org/10.1093/molbev/msaf014openalex-snapshot
Shared Selection and Genetic Architecture Drive Strikingly Repeatable Evolution in Long-Term Experimental Hybrid Populations
inferred← citeshttps://doi.org/10.1093/molbev/msaf067openalex-snapshot
Squirrel : Reconstructing Semi-directed Phylogenetic Level-1 Networks from Four-Leaved Networks or Sequence Alignments
inferred← citeshttps://doi.org/10.1093/molbev/mst127openalex-snapshot
Evolution of a Genetic Incompatibility in the Genus Xiphophorus
inferred← citeshttps://doi.org/10.1098/rspb.2017.0701openalex-snapshot
Early social learning triggers neurogenomic expression changes in a swordtail fish
inferred← citeshttps://doi.org/10.1101/2023.12.30.573732openalex-snapshot
Phylogenomics analyses of all species of Swordtails (Genus Xiphophorus ) highlights hybridization precedes speciation
inferred← citeshttps://doi.org/10.1104/pp.16.01340openalex-snapshot
Hybridization in Plants: Old Ideas, New Techniques
inferred← citeshttps://doi.org/10.1111/1755-0998.12434openalex-snapshot
simMSG: an experimental design tool for high‐throughput genotyping of hybrids
inferred← citeshttps://doi.org/10.1111/eth.12573openalex-snapshot
Predation Risk Reduces a Female Preference for Heterospecific Males in the Green Swordtail
inferred← citeshttps://doi.org/10.1111/evo.12099openalex-snapshot
PHYLOGENOMICS REVEALS EXTENSIVE RETICULATE EVOLUTION INXIPHOPHORUSFISHES
inferred← citeshttps://doi.org/10.1111/evo.12399openalex-snapshot
HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
inferred← citeshttps://doi.org/10.1111/evo.12920openalex-snapshot
Hybridization and introgression in two ecologically dissimilarFundulushybrid zones
inferred← citeshttps://doi.org/10.1111/evo.13046openalex-snapshot
The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm
inferred← citeshttps://doi.org/10.1111/evo.13902openalex-snapshot
Genomic data reveal a protracted window of introgression during the diversification of a neotropical woodcreeper radiation*
inferred← citeshttps://doi.org/10.1111/evo.14279openalex-snapshot
Genomic analyses overturn two long‐standing homoploid hybrid speciation hypotheses
inferred← citeshttps://doi.org/10.1111/jeb.13112openalex-snapshot
Speciation, species persistence and the goals of studying genomic barriers to gene flow
inferred← citeshttps://doi.org/10.1111/mec.13767openalex-snapshot
Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika
inferred← citeshttps://doi.org/10.1126/science.aar3684openalex-snapshot
Natural selection interacts with recombination to shape the evolution of hybrid genomes
inferred← citeshttps://doi.org/10.1186/s12862-016-0593-4openalex-snapshot
Ecological divergence and conservatism: spatiotemporal patterns of niche evolution in a genus of livebearing fishes (Poeciliidae: Xiphophorus)
inferred← citeshttps://doi.org/10.4238/gmr.15037972openalex-snapshot
Improved protocol for extracting genomic DNA from frozen formalin-fixed tissue resulting in high-quality whole mtDNA
inferred← citeshttps://doi.org/10.7554/elife.02535openalex-snapshot
High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species
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