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Subdivision in an Ancestral Species Creates Asymmetry in Gene Trees

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Archaic admixture in the human genome
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Genome-wide variation in the human and fruitfly: a comparison
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Inbreeding coefficients and coalescence times
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Genetic evidence for complex speciation of humans and chimpanzees
inferredcites →https://doi.org/10.1073/pnas.022629899openalex-snapshot
Mutation rates in mammalian genomes
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Generating samples under a Wright–Fisher neutral model of genetic variation
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EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/154.3.1271openalex-snapshot
Detecting Ancient Admixture in Humans Using Sequence Polymorphism Data
inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05528.xopenalex-snapshot
TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pgen.0020173openalex-snapshot
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1534/genetics.105.049593openalex-snapshot
The Concordance of Gene Trees and Species Trees at Two Linked Loci

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow
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The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
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Population Size Differences Can Lead to Biases in Phylogenetic Inference and Introgression Detection in the Presence of Purifying Selection
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Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer
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The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
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Introgression and Phenotypic Assimilation in Zimmerius Flycatchers (Tyrannidae): Population Genetic and Phylogenetic Inferences from Genome-Wide SNPs
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Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3
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Inconsistency of Species Tree Methods under Gene Flow
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Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent
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Modeling Hybridization Under the Network Multispecies Coalescent
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Demographic history and the efficacy of selection in the globally invasive mosquito Aedes aegypti
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Homoploid hybridization signals due to ancestral subdivision: a case study on the D lineage in wheat
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AN EVALUATION OF THE HYBRID SPECIATION HYPOTHESIS FORXIPHOPHORUS CLEMENCIAEBASED ON WHOLE GENOME SEQUENCES
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Genome-wide tests for introgression between cactophilicDrosophilaimplicate a role of inversions during speciation
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Recombinational Landscape and Population Genomics of Caenorhabditis elegans
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The Date of Interbreeding between Neandertals and Modern Humans
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Statistical inconsistency of the unrooted minimize deep coalescence criterion
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Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes
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Hidden in plain sight: A new pink-fruited species of Actaea L. (Ranunculaceae) from New York1
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Maximum likelihood evidence for Neandertal admixture in Eurasian populations from three genomes
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