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Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/9780470015902.a0028138openalex-snapshot
Barrier Loci and Evolution
inferredcites →https://doi.org/10.1002/evl3.37openalex-snapshot
Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations
inferredcites →https://doi.org/10.1007/s10228-005-0269-3openalex-snapshot
Distinct spawning migration patterns in sympatric Japan Sea and Pacific Ocean forms of threespine stickleback Gasterosteus aculeatus
inferredcites →https://doi.org/10.1007/s10228-014-0403-1openalex-snapshot
A new threespine stickleback, Gasterosteus nipponicus sp. nov. (Teleostei: Gasterosteidae), from the Japan Sea region
inferredcites →https://doi.org/10.1007/s10641-006-9142-0openalex-snapshot
Long-term occurrence of hybrids between Japan Sea and Pacific Ocean forms of threespine stickleback, Gasterosteus aculeatus, in Hokkaido Island, Japan
inferredcites →https://doi.org/10.1016/j.cub.2006.03.080openalex-snapshot
Conservation: Losing Biodiversity by Reverse Speciation
inferredcites →https://doi.org/10.1016/j.tree.2008.10.011openalex-snapshot
Ecological explanations for (incomplete) speciation
inferredcites →https://doi.org/10.1038/hdy.1986.135openalex-snapshot
The barrier to genetic exchange between hybridising populations
inferredcites →https://doi.org/10.1038/hdy.2008.55openalex-snapshot
On the scent of speciation: the chemosensory system and its role in premating isolation
inferredcites →https://doi.org/10.1038/hdy.2009.151openalex-snapshot
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
inferredcites →https://doi.org/10.1038/nature08441openalex-snapshot
A role for a neo-sex chromosome in stickleback speciation
inferredcites →https://doi.org/10.1038/nature10944openalex-snapshot
The genomic basis of adaptive evolution in threespine sticklebacks
inferredcites →https://doi.org/10.1038/nrg3936openalex-snapshot
Evidence for archaic adaptive introgression in humans
inferredcites →https://doi.org/10.1073/pnas.1219381110openalex-snapshot
Genomic rearrangements and the evolution of clusters of locally adaptive loci
inferredcites →https://doi.org/10.1086/284701openalex-snapshot
The Relative Rates of Evolution of Sex Chromosomes and Autosomes
inferredcites →https://doi.org/10.1086/504606openalex-snapshot
Adaptive Introgression of Herbivore Resistance Traits in the Weedy Sunflower Helianthus annuus
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Ecological Speciation
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr521openalex-snapshot
adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
inferredcites →https://doi.org/10.1093/bioinformatics/btx100openalex-snapshot
BCFtools/csq: haplotype-aware variant consequences
inferredcites →https://doi.org/10.1093/bioinformatics/btz030openalex-snapshot
admixr —R package for reproducible analyses using ADMIXTOOLS
inferredcites →https://doi.org/10.1093/genetics/57.3.625openalex-snapshot
MODIFICATION OF LINKAGE INTENSITY BY NATURAL SELECTION
inferredcites →https://doi.org/10.1093/molbev/msn049openalex-snapshot
Overdominance in the Human Genome and Olfactory Receptor Activity
inferredcites →https://doi.org/10.1093/molbev/msp017openalex-snapshot
Gene Expression Divergence and Hybrid Misexpression between Lake Whitefish Species Pairs (Coregonus spp. Salmonidae)
inferredcites →https://doi.org/10.1093/molbev/msu269openalex-snapshot
Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
inferredcites →https://doi.org/10.1093/molbev/msv011openalex-snapshot
Functional Organization of the Genome May Shape the Species Boundary in the House Mouse
inferredcites →https://doi.org/10.1093/molbev/msv078openalex-snapshot
Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome
inferredcites →https://doi.org/10.1093/molbev/msy181openalex-snapshot
The Origin of a New Sex Chromosome by Introgression between Two Stickleback Fishes
inferredcites →https://doi.org/10.1093/nar/gkz369openalex-snapshot
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
inferredcites →https://doi.org/10.1093/oso/9780198505235.001.0001openalex-snapshot
The Ecology of Adaptive Radiation
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1098/rstb.2008.0021openalex-snapshot
Genetic exchange and the origin of adaptations: prokaryotes to primates
inferredcites →https://doi.org/10.1098/rstb.2011.0249openalex-snapshot
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1111/evo.13114openalex-snapshot
Evolution of reproductive isolation in stickleback fish
inferredcites →https://doi.org/10.1111/evo.13175openalex-snapshot
Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00360.xopenalex-snapshot
COMPONENTS OF REPRODUCTIVE ISOLATION BETWEEN THE MONKEYFLOWERS MIMULUS LEWISII AND M. CARDINALIS (PHRYMACEAE)
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01747.xopenalex-snapshot
REPRODUCTIVE ISOLATION CAUSED BY NATURAL SELECTION AGAINST IMMIGRANTS FROM DIVERGENT HABITATS
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01143.xopenalex-snapshot
DESATURASE‐2 , ENVIRONMENTAL ADAPTATION, AND SEXUAL ISOLATION IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.0022-1112.2004.00433.xopenalex-snapshot
Phylogeographic relationships within the Mediterranean turbot inferred by mitochondrial DNA haplotype variation
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00824.xopenalex-snapshot
Phenotypic divergence and reproductive isolation between sympatric forms of Japanese threespine sticklebacks
inferredcites →https://doi.org/10.1111/j.1095-8649.2009.02358.xopenalex-snapshot
Ecological speciation in marinev.freshwater fishes
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02617.xopenalex-snapshot
Recombination and speciation
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02794.xopenalex-snapshot
Speciation in reverse: morphological and genetic evidence of the collapse of a three‐spined stickleback ( Gasterosteus aculeatus ) species pair
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03529.xopenalex-snapshot
Speciation reversal and biodiversity dynamics with hybridization in changing environments
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05347.xopenalex-snapshot
Interspecific hybridization increases MHC class II diversity in two sister species of newts
inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02009.xopenalex-snapshot
Ecological divergence and habitat isolation between two migratory forms of Japanese threespine stickleback (Gasterosteus aculeatus)
inferredcites →https://doi.org/10.1111/j.1558-5646.1956.tb02852.xopenalex-snapshot
A MODEL OF A GENETIC SYSTEM WHICH LEADS TO CLOSER LINKAGE BY NATURAL SELECTION
inferredcites →https://doi.org/10.1111/j.1558-5646.1981.tb04864.xopenalex-snapshot
SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00738.xopenalex-snapshot
CONTRIBUTION OF MULTIPLE ISOLATING BARRIERS TO REPRODUCTIVE ISOLATION BETWEEN A PAIR OF PHYTOPHAGOUS LADYBIRD BEETLES
inferredcites →https://doi.org/10.1111/j.1749-6632.2012.06748.xopenalex-snapshot
The genetics of sex chromosomes: evolution and implications for hybrid incompatibility
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02733.xopenalex-snapshot
introgress : a software package for mapping components of isolation in hybrids
inferredcites →https://doi.org/10.1111/jeb.13047openalex-snapshot
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
inferredcites →https://doi.org/10.1111/mec.12322openalex-snapshot
Recombination in the threespine stickleback genome—patterns and consequences
inferredcites →https://doi.org/10.1111/mec.12415openalex-snapshot
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation
inferredcites →https://doi.org/10.1111/mec.14226openalex-snapshot
Gene flow and selection interact to promote adaptive divergence in regions of low recombination
inferredcites →https://doi.org/10.1126/science.1165448openalex-snapshot
Molecular and Evolutionary History of Melanism in North American Gray Wolves
inferredcites →https://doi.org/10.1126/science.aar3684openalex-snapshot
Natural selection interacts with recombination to shape the evolution of hybrid genomes
inferredcites →https://doi.org/10.1126/science.aau5656openalex-snapshot
A key metabolic gene for recurrent freshwater colonization and radiation in fishes
inferredcites →https://doi.org/10.1146/annurev.ecolsys.24.1.189openalex-snapshot
Sibling Species in the Sea
inferredcites →https://doi.org/10.1146/annurev.ecolsys.25.1.547openalex-snapshot
GENETIC DIVERGENCE, REPRODUCTIVE ISOLATION, AND MARINE SPECIATION
inferredcites →https://doi.org/10.1163/18759866-20191344openalex-snapshot
Speciation with gene flow in marine systems
inferredcites →https://doi.org/10.1186/1471-2105-12-246openalex-snapshot
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
inferredcites →https://doi.org/10.1371/journal.pbio.2006288openalex-snapshot
Recombination rate variation shapes barriers to introgression across butterfly genomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002752openalex-snapshot
Adaptive Introgression across Species Boundaries in Heliconius Butterflies
inferredcites →https://doi.org/10.1371/journal.pgen.1004223openalex-snapshot
Sex Chromosome Turnover Contributes to Genomic Divergence between Incipient Stickleback Species
inferredcites →https://doi.org/10.1371/journal.pgen.1004234openalex-snapshot
A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness
inferredcites →https://doi.org/10.1371/journal.pgen.1004410openalex-snapshot
Speciation and Introgression between Mimulus nasutus and Mimulus guttatus
inferredcites →https://doi.org/10.1371/journal.pgen.1004966openalex-snapshot
Genomics of Divergence along a Continuum of Parapatric Population Differentiation
inferredcites →https://doi.org/10.1371/journal.pgen.1006340openalex-snapshot
The Strength of Selection against Neanderthal Introgression
inferredcites →https://doi.org/10.1371/journal.pgen.1007358openalex-snapshot
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
inferredcites →https://doi.org/10.1371/journal.pgen.1007741openalex-snapshot
Deleterious variation shapes the genomic landscape of introgression
inferredcites →https://doi.org/10.1371/journal.pone.0112404openalex-snapshot
Comparative Analysis of Japanese Three-Spined Stickleback Clades Reveals the Pacific Ocean Lineage Has Adapted to Freshwater Environments while the Japan Sea Has Not
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot
Ancient Admixture in Human History
inferredcites →https://doi.org/10.1534/genetics.116.194720openalex-snapshot
Exploring Evolutionary Relationships Across the Genome Using Topology Weighting
inferredcites →https://doi.org/10.1534/genetics.119.302623openalex-snapshot
Molecular Population Genetics
inferredcites →https://doi.org/10.1534/genetics.119.302757openalex-snapshot
Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection
inferredcites →https://doi.org/10.2307/3844738openalex-snapshot
Adaptive Introgression of Herbivore Resistance Traits in the Weedy Sunflower Helianthus annuus
inferredcites →https://doi.org/10.2973/odp.proc.sr.138.120.1995openalex-snapshot
Benthic Foraminifer Stable Isotope Record from Site 849 (0-5 Ma): Local and Global Climate Changes
inferredcites →https://doi.org/10.3390/genes9040191openalex-snapshot
Genomic Signatures of Reinforcement
inferredcites →https://doi.org/10.4159/harvard.9780674865327openalex-snapshot
Animal Species and Evolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4776021openalex-extracted
Simple Approach in Estimating Freshwater Discharge from a Wetland Stream Flowing into a Brackish Lake
inferred← citeshttps://doi.org/10.1002/ece3.70706openalex-snapshot
Mallard Hybridization With Domesticated Lineages Alters Spring Migration Behavior and Timing
inferred← citeshttps://doi.org/10.1007/s00265-021-03097-yopenalex-snapshot
Does genetic differentiation underlie behavioral divergence in response to migration barriers in sticklebacks? A common garden experiment
inferred← citeshttps://doi.org/10.1007/s10228-026-01074-xopenalex-snapshot
Habitat segregation and rare hybridization between Gasterosteus aculeatus and Gasterosteus nipponicus around the Sea of Okhotsk and the Bering Sea
inferred← citeshttps://doi.org/10.1007/s10641-023-01464-4openalex-snapshot
Variation in morphology among populations of threespine stickleback (Gasterosteus aculeatus) from western Newfoundland, Canada
inferred← citeshttps://doi.org/10.1007/s11692-023-09615-2openalex-snapshot
Ongoing Bidirectional Introgression and the Maintenance of Species Boundaries in Hemiculter Hybrid Zone
inferred← citeshttps://doi.org/10.1016/j.ejrh.2025.102666openalex-snapshot
A simple approach for estimating freshwater discharge from a wetland stream flowing into a Brackish Lake
inferred← citeshttps://doi.org/10.1038/s41559-026-03184-1openalex-snapshot
Rapid genome-wide purging following tsunami-induced hybridization in a stickleback population
inferred← citeshttps://doi.org/10.1093/gbe/evae124openalex-snapshot
Selection Shapes the Genomic Landscape of Introgressed Ancestry in a Pair of Sympatric Sea Urchin Species
inferred← citeshttps://doi.org/10.1093/icesjms/fsaf173openalex-snapshot
Genome-wide differentiation and SNP-based identification of northeastern Atlantic Sebastes species
inferred← citeshttps://doi.org/10.1101/2025.04.11.648347openalex-snapshot
Genome-wide differentiation and SNP-based identification of northeastern Atlantic Sebastes species
inferred← citeshttps://doi.org/10.1111/1755-0998.13309openalex-snapshot
Sequencing platform shifts provide opportunities but pose challenges for combining genomic data sets
inferred← citeshttps://doi.org/10.1111/jeb.13756openalex-snapshot
Speciation in marine environments: Diving under the surface
inferred← citeshttps://doi.org/10.1111/mec.15908openalex-snapshot
Divergent diapause life history timing drives both allochronic speciation and reticulate hybridization in an adaptive radiation ofRhagoletisflies
inferred← citeshttps://doi.org/10.1111/mec.16046openalex-snapshot
Regions of genetic divergence in depth‐separated Sebastes rockfish species pairs: Depth as a potential driver of speciation
inferred← citeshttps://doi.org/10.1111/mec.16604openalex-snapshot
Whole‐genome phylogeography of the blue‐faced honeyeater (Entomyzon cyanotis) and discovery and characterization of a neo‐Z chromosome
inferred← citeshttps://doi.org/10.1111/mec.17814openalex-snapshot
3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback
inferred← citeshttps://doi.org/10.1111/mec.70249openalex-snapshot
Shared and Unique Patterns of Genomic Differentiation and Introgression Between Japanese Stickleback Species Across Three Sympatric Sites
inferred← citeshttps://doi.org/10.1111/nph.18525openalex-snapshot
Whole‐genome analyses disentangle reticulate evolution of primroses in a biodiversity hotspot
inferred← citeshttps://doi.org/10.1111/nph.19361openalex-snapshot
The genomes of Darwin's primroses reveal chromosome‐scale adaptive introgression and differential permeability of species boundaries
inferred← citeshttps://doi.org/10.1134/s1995425524701026openalex-snapshot
Mechanisms of Diversification during Changes in Habitat in the Three-Spine Stickleback (Gasterosteus aculeatus) Are Fundamentally Different from the Mechanisms of Speciation within the Genus Gasterosteus
inferred← citeshttps://doi.org/10.1186/s12862-020-01713-5openalex-snapshot
Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.3389/fpls.2023.1223148openalex-snapshot
The role of recombination landscape in species hybridisation and speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185852openalex-snapshot
Additional file 1 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185855openalex-snapshot
Additional file 2 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185858openalex-snapshot
Additional file 3 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185867openalex-snapshot
Additional file 6 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185870openalex-snapshot
Additional file 7 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.64898/2026.05.05.723031openalex-snapshot
Haplotype tagging sheds light on speciation between two divergent cryptic species of the brown algae Ectocarpus
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