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Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogeography of the Indo‐West Pacific maskrays (Dasyatidae, Neotrygon ): a complex example of chondrichthyan radiation in the Cenozoic
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Cultural transmission within maternal lineages: vocal clans in resident killer whales in southern Alaska
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Molecular Phylogenetics and Ecological Diversification of the Transisthmian Fish Genus Centropomus (Perciformes: Centropomidae)
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Genetic population structure of sardine (Sardina pilchardus) off Morocco detected with intron polymorphism (EPIC-PCR)
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Fine-scale genetic structure in short-beaked common dolphins (Delphinus delphis) along the East Australian Current
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The vocal behaviour of mammal-eating killer whales: communicating with costly calls
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Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade
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Mitochondrial and nuclear markers reveal isolation by distance and effects of Pleistocene glaciations in the northeastern Atlantic and Mediterranean populations of the white seabream (Diplodus sargus, L.)
inferredcites →https://doi.org/10.1016/j.marenvres.2006.07.002openalex-snapshot
Use of chemical tracers in assessing the diet and foraging regions of eastern North Pacific killer whales
inferredcites →https://doi.org/10.1016/j.mce.2010.12.019openalex-snapshot
GATA4 regulates Sertoli cell function and fertility in adult male mice☆
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Can one learn history from the allelic spectrum?
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The origins of tropical marine biodiversity
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Comparative phylogeography of Atlantic bluefin tuna and swordfish: the combined effects of vicariance, secondary contact, introgression, and population expansion on the regional phylogenies of two highly migratory pelagic fishes
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Phylogeography and demography of the Blenniid Parablennius parvicornis and its sister species P. sanguinolentus from the northeastern Atlantic Ocean and the western Mediterranean Sea
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Divergence date estimation and a comprehensive molecular tree of extant cetaceans
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Evolution of population genetic structure in marine mammal species
inferredcites →https://doi.org/10.1038/hdy.2011.21openalex-snapshot
Molecular ecology meets remote sensing: environmental drivers to population structure of humpback dolphins in the Western Indian Ocean
inferredcites →https://doi.org/10.1038/hdy.2014.67openalex-snapshot
Phylogenomics of the killer whale indicates ecotype divergence in sympatry
inferredcites →https://doi.org/10.1038/nature11584openalex-snapshot
The genomic landscape of species divergence in Ficedula flycatchers
inferredcites →https://doi.org/10.1038/ng.2494openalex-snapshot
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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Phylogeographic evidence for the existence of an ancient biogeographic barrier: the Isthmus of Kra Seaway
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Fine‐scale genetic structure, estuarine colonization and incipient speciation in the marine silverside fishOdontesthes argentinensis
inferredcites →https://doi.org/10.1073/pnas.0404142101openalex-snapshot
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
inferredcites →https://doi.org/10.1073/pnas.0501806102openalex-snapshot
Evolutionary animation: How do molecular phylogenies compare to Mayr's reconstruction of speciation patterns in the sea?
inferredcites →https://doi.org/10.1093/beheco/arr151openalex-snapshot
The influence of ecology on sociality in the killer whale (Orcinus orca)
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr521openalex-snapshot
adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
inferredcites →https://doi.org/10.1093/jhered/90.6.591openalex-snapshot
Genetic study of the Atlantic/Mediterranean transition in sea bass (Dicentrarchus labrax)
inferredcites →https://doi.org/10.1093/jhered/esr067openalex-snapshot
Inferred Paternity and Male Reproductive Success in a Killer Whale (Orcinus orca) Population
inferredcites →https://doi.org/10.1093/jhered/est037openalex-snapshot
Geographic Patterns of Genetic Differentiation among Killer Whales in the Northern North Pacific
inferredcites →https://doi.org/10.1093/molbev/msm063openalex-snapshot
Evolution of Population Structure in a Highly Social Top Predator, the Killer Whale
inferredcites →https://doi.org/10.1093/molbev/msq181openalex-snapshot
A High Incidence of Selection on Physiologically Important Genes in the Three-Spined Stickleback, Gasterosteus aculeatus
inferredcites →https://doi.org/10.1093/molbev/msr228openalex-snapshot
Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)
inferredcites →https://doi.org/10.1093/molbev/msu058openalex-snapshot
Killer Whale Nuclear Genome and mtDNA Reveal Widespread Population Bottleneck during the Last Glacial Maximum
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FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
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Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
inferredcites →https://doi.org/10.1093/sysbio/syt051openalex-snapshot
Recent Diversification of a Marine Genus (Tursiops spp.) Tracks Habitat Preference and Environmental Change
inferredcites →https://doi.org/10.1098/rspb.2002.2033openalex-snapshot
Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history
inferredcites →https://doi.org/10.1098/rspb.2003.2404openalex-snapshot
Habitat preference and the marine-speciation paradox
inferredcites →https://doi.org/10.1098/rspb.2004.3026openalex-snapshot
Selection strength and hitchhiking around two anti-malarial resistance genes
inferredcites →https://doi.org/10.1098/rspb.2005.3076openalex-snapshot
Habitat structure and the dispersal of male and female bottlenose dolphins ( Tursiops truncatus )
inferredcites →https://doi.org/10.1098/rspb.2013.1481openalex-snapshot
Tracking niche variation over millennial timescales in sympatric killer whale lineages
inferredcites →https://doi.org/10.1101/gr.102954.109openalex-snapshot
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species.
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02658.xopenalex-snapshot
Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03067.xopenalex-snapshot
Site‐specific genetic divergence in parallel hybrid zones suggests nonallopatric evolution of reproductive barriers
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04446.xopenalex-snapshot
Local selection and population structure in a deep-sea fish, the roundnose grenadier (Coryphaenoides rupestris)
inferredcites →https://doi.org/10.1111/j.1420-9101.2005.01033.xopenalex-snapshot
Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.)
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01887.xopenalex-snapshot
Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca)
inferredcites →https://doi.org/10.1111/j.1469-185x.2012.00239.xopenalex-snapshot
Killer whale ecotypes: is there a global model?
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01931.xopenalex-snapshot
genepop ’007: a complete re‐implementation of the genepop software for Windows and Linux
inferredcites →https://doi.org/10.1111/j.1748-7692.2009.00348.xopenalex-snapshot
The relationship between body mass and relative investment in testes mass in cetaceans: Implications for inferring interspecific variations in the extent of sperm competition
inferredcites →https://doi.org/10.1111/jeb.12032openalex-snapshot
Atypical panmixia in a European dolphin species (Delphinus delphis): implications for the evolution of diversity across oceanic boundaries
inferredcites →https://doi.org/10.1111/mec.12309openalex-snapshot
Annotated genes and nonannotated genomes: cross‐species use of Gene Ontology in ecology and evolution research
inferredcites →https://doi.org/10.1139/f95-228openalex-snapshot
Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland: microsatellite DNA variation and antifreeze level
inferredcites →https://doi.org/10.1139/z98-089openalex-snapshot
Dietary specialization in two sympatric populations of killer whales (Orcinus orca) in coastal British Columbia and adjacent waters
inferredcites →https://doi.org/10.1177/117693430500100003openalex-snapshot
Arlequin (version 3.0): An integrated software package for population genetics data analysis
inferredcites →https://doi.org/10.1186/1471-2105-8-426openalex-snapshot
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
inferredcites →https://doi.org/10.1186/1471-2105-9-323openalex-snapshot
LOSITAN: A workbench to detect molecular adaptation based on a F st -outlier method
inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
inferredcites →https://doi.org/10.1371/journal.pbio.0030245openalex-snapshot
Evolution at Two Levels: On Genes and Form
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0024980openalex-snapshot
Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes
inferredcites →https://doi.org/10.1371/journal.pone.0031482openalex-snapshot
Seascape Genetics of a Globally Distributed, Highly Mobile Marine Mammal: The Short-Beaked Common Dolphin (Genus Delphinus)
inferredcites →https://doi.org/10.1644/1545-1542(2001)082<0123:psofpn>2.0.co;2openalex-snapshot
POPULATION STRUCTURE OF FINLESS PORPOISES (NEOPHOCAENA PHOCAENOIDES) IN COASTAL WATERS OF JAPAN BASED ON MITOCHONDRIAL DNA SEQUENCES
inferredcites →https://doi.org/10.2989/1814232x.2010.501544openalex-snapshot
Killer whales in South African waters—a review of their biology
inferredcites →https://doi.org/10.3109/19401736.2010.494727openalex-snapshot
Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
inferredcites →https://doi.org/10.3892/ijmm_00000474openalex-snapshot
GATA-4 promotes the differentiation of P19 cells into cardiac myocytes
inferredcites →https://doi.org/10.5860/choice.38-2743openalex-snapshot
Killer whales: the natural history and genealogy of Orinus orca in British Columbia and Washington

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1098/rsos.231368zenodo-depositor-declared
Revised taxonomy of eastern North Pacific killer whales ( Orcinus orca ): Bigg’s and resident ecotypes deserve species status
inferred← citeshttps://doi.org/10.1002/ece3.3846openalex-snapshot
Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus
inferred← citeshttps://doi.org/10.1002/ece3.4646openalex-snapshot
Killer whales ( Orcinus orca ) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
inferred← citeshttps://doi.org/10.1002/ece3.73887openalex-snapshot
An Assessment of Allelic and SNP Bias in a Genome‐Wide SNP Enrichment Kit for Killer Whales
inferred← citeshttps://doi.org/10.1007/13836_2018_20openalex-snapshot
Population Genomics Provides Key Insights in Ecology and Evolution
inferred← citeshttps://doi.org/10.1007/13836_2018_56openalex-snapshot
Landscape Genomics for Wildlife Research
inferred← citeshttps://doi.org/10.1007/978-3-030-23633-5_6openalex-snapshot
Physiological Thresholds in the Context of Marine Mammal Conservation
inferred← citeshttps://doi.org/10.1007/978-3-031-35651-3_16openalex-snapshot
Sex in Killer Whales: Behavior, Exogamy, and the Evolution of Sexual Strategies in the Ocean’s Apex Predator
inferred← citeshttps://doi.org/10.1007/s00300-023-03156-2openalex-snapshot
Unraveling the enigmatic type D killer whale (Orcinus orca): mass stranding in the Magellan Strait, Chile
inferred← citeshttps://doi.org/10.1007/s10592-017-0967-1openalex-snapshot
Genome-wide SNPs reveal low effective population size within confined management units of the highly vagile Galapagos shark (Carcharhinus galapagensis)
inferred← citeshttps://doi.org/10.1007/s11692-018-9445-zopenalex-snapshot
Eco-Evolutionary Processes Generating Diversity Among Bottlenose Dolphin, Tursiops truncatus, Populations off Baja California, Mexico
inferred← citeshttps://doi.org/10.1016/b978-0-12-804327-1.00176-xopenalex-snapshot
Molecular Ecology
inferred← citeshttps://doi.org/10.1016/b978-0-443-28919-4.00003-9openalex-snapshot
Gene-culture co-evolution
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2024.105585openalex-snapshot
Population genomics and demographic modeling enhance our understanding of trophic level interactions in biological control
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101640openalex-snapshot
An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species
inferred← citeshttps://doi.org/10.1016/j.tree.2023.07.005openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ympev.2016.02.014openalex-snapshot
Mechanisms of global diversification in the marine species Madeiran Storm-petrel Oceanodroma castro and Monteiro’s Storm-petrel O. monteiroi: Insights from a multi-locus approach
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108669openalex-snapshot
Geographic distance and climate-mediated landscape resistance explain the genetic differentiation of Rhopalus sapporensis across China
inferred← citeshttps://doi.org/10.1038/hdy.2015.45openalex-snapshot
Resource specialisation and the divergence of killer whale populations
inferred← citeshttps://doi.org/10.1038/hdy.2016.112openalex-snapshot
Killer whales differentiating in geographic sympatry facilitated by divergent behavioural traditions
inferred← citeshttps://doi.org/10.1038/hdy.2016.54openalex-snapshot
Genome-wide SNP data suggest complex ancestry of sympatric North Pacific killer whale ecotypes
inferred← citeshttps://doi.org/10.1038/hdy.2016.66openalex-snapshot
Post-glacial habitat release and incipient speciation in the genus Delphinus
inferred← citeshttps://doi.org/10.1038/ncomms11693openalex-snapshot
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes
inferred← citeshttps://doi.org/10.1038/s41437-021-00442-9openalex-snapshot
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
inferred← citeshttps://doi.org/10.1038/s41437-024-00740-yopenalex-snapshot
Kinship clustering within an ecologically diverse killer whale metapopulation
inferred← citeshttps://doi.org/10.1038/s41437-026-00824-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/srep44559openalex-snapshot
Lineage divergence, local adaptation across a biogeographic break, and artificial transport, shape the genetic structure in the ascidian Pyura chilensis
inferred← citeshttps://doi.org/10.1073/pnas.1620736114openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/beheco/arx034openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/gbe/evad199openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/gbe/evaf227openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jhered/esw044openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaa066openalex-snapshot
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inferred← citeshttps://doi.org/10.1098/rspb.2024.0524openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.01.04.574243openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/625848openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/ddi.12676openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/fwb.13199openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/gcb.17528openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/jbi.13142openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/maec.12530openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.13284openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.13294openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.13399openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.13988openalex-snapshot
Genomic data detect corresponding signatures of population size change on an ecological time scale in two salamander species
inferred← citeshttps://doi.org/10.1111/mec.14365openalex-snapshot
Habitat use, but not gene flow, is influenced by human activities in two ecotypes of Egyptian fruit bat (Rousettus aegyptiacus)
inferred← citeshttps://doi.org/10.1111/mec.15865openalex-snapshot
Genomic signatures of divergent selection are associated with social behaviour for spinner dolphin ecotypes
inferred← citeshttps://doi.org/10.1111/mms.12851openalex-snapshot
Population genomic structure of killer whales ( Orcinus orca ) in Australian and New Zealand waters
inferred← citeshttps://doi.org/10.1111/mms.70197openalex-snapshot
Killer Whales in the Central Tropical Pacific: Occurrence, Resightings, Morphology, and Acoustics
inferred← citeshttps://doi.org/10.1111/nph.14084openalex-snapshot
Landscape genomics reveals altered genome wide diversity within revegetated stands of Eucalyptus microcarpa (Grey Box)
inferred← citeshttps://doi.org/10.11144/javeriana.10554.34362openalex-snapshot
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inferred← citeshttps://doi.org/10.1126/sciadv.abg1245openalex-snapshot
Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
inferred← citeshttps://doi.org/10.11606/d.41.2020.tde-30112020-012851openalex-snapshot
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inferred← citeshttps://doi.org/10.1162/posc_a_00630openalex-snapshot
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inferred← citeshttps://doi.org/10.1163/1568539x-00003317openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12864-020-6603-3openalex-snapshot
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inferred← citeshttps://doi.org/10.13023/etd.2017.390openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0162792openalex-snapshot
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inferred← citeshttps://doi.org/10.20944/preprints202408.1259.v1openalex-snapshot
The Algorithms
inferred← citeshttps://doi.org/10.3354/meps11998openalex-snapshot
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inferred← citeshttps://doi.org/10.3356/jrr-16-47.1openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/biology15181619openalex-snapshot
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inferred← citeshttps://doi.org/10.47536/jcrm.v18i1.421openalex-snapshot
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inferred← citeshttps://doi.org/10.47536/jcrm.v24i1.366openalex-snapshot
Development of a new SNP panel for bowhead whales (Balaena mysticetus)
inferred← citeshttps://doi.org/10.7287/peerj.6806v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Shared genomic outliers across two divergent population clusters of a highly threatened seagrass (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.6806v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Shared genomic outliers across two divergent population clusters of a highly threatened seagrass (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.6806openalex-snapshot
Shared genomic outliers across two divergent population clusters of a highly threatened seagrass
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.