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Phylogenomics of the killer whale indicates ecotype divergence in sympatry

https://doi.org/10.1038/hdy.2014.67

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Cultural transmission within maternal lineages: vocal clans in resident killer whales in southern Alaska

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Patterns of Movement

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The vocal behaviour of mammal-eating killer whales: communicating with costly calls

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Use of chemical tracers in assessing the diet and foraging regions of eastern North Pacific killer whales

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Bayesian inference of character evolution

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S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

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RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

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Marine Mammal Biology: An evolutionary approach

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Population Genetics for Animal Conservation

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Terrigenous input and paleoproductivity in the Southern Ocean

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Contribution of Southern Ocean surface-water stratification to low atmospheric CO2 concentrations during the last glacial period

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

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MrBayes 3: Bayesian phylogenetic inference under mixed models

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TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

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Fast and accurate short read alignment with Burrows–Wheeler transform

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PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

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The variant call format and VCFtools

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Low genetic variation among killer whales (Orcinus orca) in the eastern North Pacific and genetic differentiation between foraging specialists

inferredcites →https://doi.org/10.1093/jhered/est037openalex-snapshot

Geographic Patterns of Genetic Differentiation among Killer Whales in the Northern North Pacific

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A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process

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Evolution of Population Structure in a Highly Social Top Predator, the Killer Whale

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SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

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Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)

inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

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Killer Whale Nuclear Genome and mtDNA Reveal Widespread Population Bottleneck during the Last Glacial Maximum

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Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography

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Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

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Recent Diversification of a Marine Genus (Tursiops spp.) Tracks Habitat Preference and Environmental Change

inferredcites →https://doi.org/10.1098/rsbl.2007.0377openalex-snapshot

Elevated substitution rates estimated from ancient DNA sequences

inferredcites →https://doi.org/10.1098/rspb.2002.2033openalex-snapshot

Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history

inferredcites →https://doi.org/10.1098/rspb.2003.2404openalex-snapshot

Habitat preference and the marine-speciation paradox

inferredcites →https://doi.org/10.1098/rspb.2005.3076openalex-snapshot

Habitat structure and the dispersal of male and female bottlenose dolphins ( Tursiops truncatus )

inferredcites →https://doi.org/10.1098/rspb.2013.1481openalex-snapshot

Tracking niche variation over millennial timescales in sympatric killer whale lineages

inferredcites →https://doi.org/10.1101/gr.102954.109openalex-snapshot

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species.

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1111/j.1095-8312.2012.01872.xopenalex-snapshot

Cultural traditions and the evolution of reproductive isolation: ecological speciation in killer whales?

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04407.xopenalex-snapshot

Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04957.xopenalex-snapshot

Genetic differentiation among North Atlantic killer whale populations

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05728.xopenalex-snapshot

Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus D elphinus )

inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01887.xopenalex-snapshot

Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca)

inferredcites →https://doi.org/10.1111/j.1469-185x.2012.00239.xopenalex-snapshot

Killer whale ecotypes: is there a global model?

inferredcites →https://doi.org/10.1111/j.1748-7692.2006.00013.xopenalex-snapshot

A NORTHEAST PACIFIC OFFSHORE KILLER WHALE (ORCINUS ORCA) FEEDING ON A PACIFIC HALIBUT (HIPPOGLOSSUS STENOLEPIS)

inferredcites →https://doi.org/10.1111/j.1748-7692.2008.00206.xopenalex-snapshot

Eastern temperate North Pacific offshore killer whales ( Orcinus orca ): Occurrence, movements, and insights into feeding ecology

inferredcites →https://doi.org/10.1111/mec.12023openalex-snapshot

Genome‐wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the L ake V ictoria cichlid adaptive radiation

inferredcites →https://doi.org/10.1139/z98-089openalex-snapshot

Dietary specialization in two sympatric populations of killer whales (Orcinus orca) in coastal British Columbia and adjacent waters

inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095804openalex-snapshot

Sympatric Speciation: Models and Empirical Evidence

inferredcites →https://doi.org/10.1146/annurev.es.25.110194.002555openalex-snapshot

GENETIC DIVERGENCE, REPRODUCTIVE ISOLATION, AND MARINE SPECIATION

inferredcites →https://doi.org/10.1186/1471-2105-9-323openalex-snapshot

LOSITAN: A workbench to detect molecular adaptation based on a F st -outlier method

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An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

inferredcites →https://doi.org/10.1371/journal.pone.0024980openalex-snapshot

Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes

inferredcites →https://doi.org/10.1515/9780691187051openalex-snapshot

Fitness Landscapes and the Origin of Species (MPB-41)

inferredcites →https://doi.org/10.3354/ab00340openalex-snapshot

Abundance estimates of killer whales at subantarctic Marion Island

inferredcites →https://doi.org/10.47536/jcrm.v5i2.813openalex-snapshot

Three forms of killer whales (Orcinus orca) in Antarctic waters

inferredcites →https://doi.org/10.5860/choice.38-2743openalex-snapshot

Killer whales: the natural history and genealogy of Orinus orca in British Columbia and Washington

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1098/rsos.231368zenodo-depositor-declared

Revised taxonomy of eastern North Pacific killer whales ( Orcinus orca ): Bigg’s and resident ecotypes deserve species status

inferred← citeshttps://doi.org/10.1002/ece3.4646openalex-snapshot

Killer whales ( Orcinus orca ) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns

inferred← citeshttps://doi.org/10.1002/ece3.71359openalex-snapshot

Species Distribution Modeling of Killer Whales ( Orcinus orca ) in Australian Waters

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Killer Whales: Behavior, Social Organization, and Ecology of the Oceans’ Apex Predators

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inferred← citeshttps://doi.org/10.1007/s40857-017-0103-xopenalex-snapshot

High-Frequency Modulated Signals Recorded Off the Antarctic Peninsula Area: Are Killer Whales Emitting Them?

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Genetics and Genomics

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Concentrations and profiles of organochlorine contaminants in North Pacific resident and transient killer whale (Orcinus orca) populations

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106756openalex-snapshot

Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers

inferred← citeshttps://doi.org/10.1038/hdy.2014.120openalex-snapshot

Sympatric speciation in killer whales?

inferred← citeshttps://doi.org/10.1038/hdy.2015.45openalex-snapshot

Resource specialisation and the divergence of killer whale populations

inferred← citeshttps://doi.org/10.1038/hdy.2016.112openalex-snapshot

Killer whales differentiating in geographic sympatry facilitated by divergent behavioural traditions

inferred← citeshttps://doi.org/10.1038/hdy.2016.118openalex-snapshot

A response to Hoelzel & Moura

inferred← citeshttps://doi.org/10.1038/hdy.2016.54openalex-snapshot

Genome-wide SNP data suggest complex ancestry of sympatric North Pacific killer whale ecotypes

inferred← citeshttps://doi.org/10.1038/ncomms11693openalex-snapshot

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

inferred← citeshttps://doi.org/10.1038/s41598-021-95357-0openalex-snapshot

Hybridization with mountain hares increases the functional allelic repertoire in brown hares

inferred← citeshttps://doi.org/10.1073/pnas.1620736114openalex-snapshot

Gene–culture coevolution in whales and dolphins

inferred← citeshttps://doi.org/10.1093/beheco/arx034openalex-snapshot

Kinship and association in a highly social apex predator population, killer whales at Marion Island

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Colonizing the Wild West: Low Diversity of Complete Mitochondrial Genomes in Western North Pacific Killer Whales Suggests a Founder Effect

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Killer whale acoustic patterns respond to prey abundance and environmental variability around the Prince Edward Islands, Southern Ocean

inferred← citeshttps://doi.org/10.1101/2020.10.23.352286openalex-snapshot

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