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Genome-wide signatures of complex introgression and adaptive evolution in the big cats

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Clinical and molecular overlap in overgrowth syndromes

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Forelimb indicators of prey‐size preference in the Felidae

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Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

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ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution

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Comparative feeding ecology of felids in a neotropical rainforest

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CAN—a pan-carnivore SINE family

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Basement membranes and human disease

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Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction

inferredcites →https://doi.org/10.1016/j.cell.2011.06.016openalex-snapshot

Assembly of Lamina-Specific Neuronal Connections by Slit Bound to Type IV Collagen

inferredcites →https://doi.org/10.1016/j.ejcb.2014.06.003openalex-snapshot

Dock-family exchange factors in cell migration and disease

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ESRP1 and ESRP2 Are Epithelial Cell-Type-Specific Regulators of FGFR2 Splicing

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.ympev.2010.01.033openalex-snapshot

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences

inferredcites →https://doi.org/10.1016/j.ympev.2010.01.036openalex-snapshot

Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae)

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

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Repbase Update: a database and an electronic journal of repetitive elements

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Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

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Inference of human population history from individual whole-genome sequences

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Evolution of Darwin’s finches and their beaks revealed by genome sequencing

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The tiger genome and comparative analysis with lion and snow leopard genomes

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Lamina-specific axonal projections in the zebrafish tectum require the type IV collagen Dragnet

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The mTOR signalling cascade: paving new roads to cure neurological disease

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Dock3 induces axonal outgrowth by stimulating membrane recruitment of the WAVE complex

inferredcites →https://doi.org/10.1083/jcb.201301011openalex-snapshot

Liprin-α2 promotes the presynaptic recruitment and turnover of RIM1/CASK to facilitate synaptic transmission

inferredcites →https://doi.org/10.1089/cmb.2006.13.1028openalex-snapshot

A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences

inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1246openalex-snapshot

CONSEL: for assessing the confidence of phylogenetic tree selection

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Generating samples under a Wright–Fisher neutral model of genetic variation

inferredcites →https://doi.org/10.1093/bioinformatics/bti774openalex-snapshot

WindowMasker: window-based masker for sequenced genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btp157openalex-snapshot

Infernal 1.0: inference of RNA alignments

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btq609openalex-snapshot

Assigning duplication events to relative temporal scales in genome-wide studies

inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot

The variant call format and VCFtools

inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot

FLASH: fast length adjustment of short reads to improve genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/jhered/esr051openalex-snapshot

Carnivore-Specific SINEs (Can-SINEs): Distribution, Evolution, and Genomic Impact

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msv142openalex-snapshot

Aberrant Time to Most Recent Common Ancestor as a Signature of Natural Selection

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/nar/gki198openalex-snapshot

MAFFT version 5: improvement in accuracy of multiple sequence alignment

inferredcites →https://doi.org/10.1093/nar/gkl091openalex-snapshot

M-Coffee: combining multiple sequence alignment methods with T-Coffee

inferredcites →https://doi.org/10.1093/nar/gkn766openalex-snapshot

Rfam: updates to the RNA families database

inferredcites →https://doi.org/10.1093/nar/gkn787openalex-snapshot

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

inferredcites →https://doi.org/10.1093/nar/gkq1039openalex-snapshot

Pathway Commons, a web resource for biological pathway data

inferredcites →https://doi.org/10.1093/nar/gkt1026openalex-snapshot

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

inferredcites →https://doi.org/10.1093/nar/gkt1177openalex-snapshot

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

inferredcites →https://doi.org/10.1093/nar/gkt439openalex-snapshot

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

inferredcites →https://doi.org/10.1093/nar/gku1179openalex-snapshot

Gene Ontology Consortium: going forward

inferredcites →https://doi.org/10.1093/nar/gkv1070openalex-snapshot

KEGG as a reference resource for gene and protein annotation

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p53 Regulation of the IGF-1/AKT/mTOR Pathways and the Endosomal Compartment

inferredcites →https://doi.org/10.1101/gad.236349.113openalex-snapshot

Insights into the biological functions of Dock family guanine nucleotide exchange factors

inferredcites →https://doi.org/10.1101/gr.099416.109openalex-snapshot

Ecological adaptation determines functional mammalian olfactory subgenomes

inferredcites →https://doi.org/10.1101/gr.186668.114openalex-snapshot

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

inferredcites →https://doi.org/10.1101/gr.7337908openalex-snapshot

ALLPATHS: De novo assembly of whole-genome shotgun microreads

inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot

Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

inferredcites →https://doi.org/10.1111/1755-0998.12087openalex-snapshot

Using I llumina next generation sequencing technologies to sequence multigene families in de novo species

inferredcites →https://doi.org/10.1111/j.1095-8312.2008.01169.xopenalex-snapshot

Craniodental indicators of prey size preference in the Felidae

inferredcites →https://doi.org/10.1126/science.1122277openalex-snapshot

The Late Miocene Radiation of Modern Felidae: A Genetic Assessment

inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot

A Draft Sequence of the Neandertal Genome

inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot

Extensive introgression in a malaria vector species complex revealed by phylogenomics

inferredcites →https://doi.org/10.1159/000144663openalex-snapshot

Adaptive differences in the body proportions of large felids

inferredcites →https://doi.org/10.1159/000447017openalex-snapshot

Molecular Mechanisms of Stress-Responsive Changes in Collagen and Elastin Networks in Skin

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Association Mapping of the High-Grade Myopia MYP3 Locus Reveals Novel Candidates UHRF1BP1L , PTPRR , and PPFIA2

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ETE: a python Environment for Tree Exploration

inferredcites →https://doi.org/10.1186/1471-2105-11-80openalex-snapshot

Parameters for accurate genome alignment

inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

inferredcites →https://doi.org/10.1186/1471-2105-5-59openalex-snapshot

Gene finding in novel genomes

inferredcites →https://doi.org/10.1186/1471-2105-6-298openalex-snapshot

Kalign – an accurate and fast multiple sequence alignment algorithm

inferredcites →https://doi.org/10.1186/1471-2164-13-403openalex-snapshot

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

inferredcites →https://doi.org/10.1186/2047-217x-3-13openalex-snapshot

Annotated features of domestic cat – Felis catus genome

inferredcites →https://doi.org/10.1186/gb-2008-9-10-235openalex-snapshot

Large-scale assignment of orthology: back to phylogenetics?

inferredcites →https://doi.org/10.1186/gb-2008-9-5-224openalex-snapshot

Glypicans

inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot

ANGSD: Analysis of Next Generation Sequencing Data

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1534/g3.116.028746openalex-snapshot

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

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Ocular Features in Alport Syndrome

inferredcites →https://doi.org/10.7208/chicago/9780226518237.001.0001openalex-snapshot

Wild Cats of the World

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The splicing regulators Esrp1 and Esrp2 direct an epithelial splicing program essential for mammalian development

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Correlated Evolution in the Small Parsimony Framework

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Conservation Genomics of Neotropical Carnivores

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Population Differentiation with Introgression

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Collaborative behaviour and coalitions in male jaguars (Panthera onca)—evidence and comparison with other felids

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Extensive Interspecific Gene Flow Shaped Complex Evolutionary History and Underestimated Species Diversity in Rapidly Radiated Dolphins

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Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

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High genetic diversity and low differentiation reflect the ecological versatility of the African leopard

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African and Asian leopards are highly differentiated at the genomic level

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Whole-genome analysis of giraffe supports four distinct species

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Giraffe lineages are shaped by major ancient admixture events

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Evolutionary patterns of cat-like carnivorans unveil drivers of the sabertooth morphology

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inferred← citeshttps://doi.org/10.1093/g3journal/jkac277openalex-snapshot

Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger ( Panthera uncia , Panthera pardus pardus , and Panthera tigris )

inferred← citeshttps://doi.org/10.1093/gbe/evaa053openalex-snapshot

Divergence-Based Introgression Polarization

inferred← citeshttps://doi.org/10.1093/gbe/evae021openalex-snapshot

The Addis Ababa Lions: Whole-Genome Sequencing of a Rare and Precious Population

inferred← citeshttps://doi.org/10.1093/gbe/evaf060openalex-snapshot

Parameterizing Pantherinae: De Novo Mutation Rate Estimates from Panthera and Neofelis Pedigrees

inferred← citeshttps://doi.org/10.1093/gbe/evaf218openalex-snapshot

Speciation Genomics in the Tiger Whiptail Lizards ( Aspidoscelis tigris Complex)

inferred← citeshttps://doi.org/10.1093/gbe/evag086openalex-snapshot

Genome Scans Reveal Species-Specific Selection in the Genus Lynx

inferred← citeshttps://doi.org/10.1093/gigascience/giac112openalex-snapshot

Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation

inferred← citeshttps://doi.org/10.1093/jhered/esaa057openalex-snapshot

Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat ( Felis catus ) and Asian Leopard Cat ( Prionailurus bengalensis )

inferred← citeshttps://doi.org/10.1093/jhered/esad082openalex-snapshot

Mitogenomic analysis of a late Pleistocene jaguar from North America

inferred← citeshttps://doi.org/10.1093/molbev/msab222openalex-snapshot

Genome-Wide SNPs Clarify a Complex Radiation and Support Recognition of an Additional Cat Species

inferred← citeshttps://doi.org/10.1093/molbev/msac117openalex-snapshot

Genomic Signatures of Divergent Ecological Strategies in a Recent Radiation of Neotropical Wild Cats

inferred← citeshttps://doi.org/10.1093/molbev/msac130openalex-snapshot

Tree House Explorer: A Novel Genome Browser for Phylogenomics

inferred← citeshttps://doi.org/10.1093/molbev/msac147openalex-snapshot

De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations

inferred← citeshttps://doi.org/10.1093/molbev/msad013openalex-snapshot

Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers

inferred← citeshttps://doi.org/10.1093/molbev/msad190openalex-snapshot

Pangolin Genomes Offer Key Insights and Resources for the World’s Most Trafficked Wild Mammals

inferred← citeshttps://doi.org/10.1093/molbev/msad229openalex-snapshot

Phylogenomics Reveals High Levels of Incomplete Lineage Sorting at the Ancestral Nodes of the Macaque Radiation

inferred← citeshttps://doi.org/10.1093/molbev/msad247openalex-snapshot

Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation

inferred← citeshttps://doi.org/10.1093/molbev/msad255openalex-snapshot

Extensive Phylogenomic Discordance and the Complex Evolutionary History of the Neotropical Cat Genus Leopardus

inferred← citeshttps://doi.org/10.1093/molbev/msaf014openalex-snapshot

Shared Selection and Genetic Architecture Drive Strikingly Repeatable Evolution in Long-Term Experimental Hybrid Populations

inferred← citeshttps://doi.org/10.1093/molbev/msaf291openalex-snapshot

Mitonuclear Discordance of Beetles Shaped by Incomplete Lineage Sorting and Introgression Under Loose Interaction Mechanism

inferred← citeshttps://doi.org/10.1093/molbev/msy076openalex-snapshot

Neutral Theory Is the Foundation of Conservation Genetics

inferred← citeshttps://doi.org/10.1093/molbev/msz139openalex-snapshot

Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species

inferred← citeshttps://doi.org/10.1093/nar/gkab966openalex-snapshot

PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies

inferred← citeshttps://doi.org/10.1093/oso/9780192898623.003.0003openalex-snapshot

Transcriptomic insights into Odonata ecology and evolution

inferred← citeshttps://doi.org/10.1093/sysbio/syaa099openalex-snapshot

Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere

inferred← citeshttps://doi.org/10.1093/sysbio/syab063openalex-snapshot

Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

inferred← citeshttps://doi.org/10.1093/sysbio/syac009openalex-snapshot

Full-Likelihood Genomic Analysis Clarifies a Complex History of Species Divergence and Introgression: The Example of the erato-sara Group of Heliconius Butterflies

inferred← citeshttps://doi.org/10.1093/sysbio/syad077openalex-snapshot

Detection of Ghost Introgression Requires Exploiting Topological and Branch Length Information

inferred← citeshttps://doi.org/10.1093/sysbio/syae016openalex-snapshot

Museum Skins Enable Identification of Introgression Associated with Cytonuclear Discordance

inferred← citeshttps://doi.org/10.1093/sysbio/syae027openalex-snapshot

Exon Capture Museomics Deciphers the Nine-Banded Armadillo Species Complex and Identifies a New Species Endemic to the Guiana Shield

inferred← citeshttps://doi.org/10.1093/sysbio/syae028openalex-snapshot

Towards Reliable Detection of Introgression in the Presence of Among-Species Rate Variation

inferred← citeshttps://doi.org/10.1093/sysbio/syae050openalex-snapshot

Hierarchical Heuristic Species Delimitation Under the Multispecies Coalescent Model with Migration

inferred← citeshttps://doi.org/10.1093/sysbio/syaf019openalex-snapshot

Inference of Cross-Species Gene Flow Using Genomic Data Depends on the Methods: Case Study of Gene Flow in Drosophila

inferred← citeshttps://doi.org/10.1093/sysbio/syaf021openalex-snapshot

Massive Inter-species Introgression Overwhelms Phylogenomic Relationships Among Jaguar, Lion, and Leopard

inferred← citeshttps://doi.org/10.1093/sysbio/syag012openalex-snapshot

Synergizing Bayesian and Heuristic Approaches: D-BPP Uncovers Ghost Introgression in Panthera and Thuja

inferred← citeshttps://doi.org/10.1093/sysbio/syy019openalex-snapshot

The Biogeography of Deep Time Phylogenetic Reticulation

inferred← citeshttps://doi.org/10.1093/sysbio/syy041openalex-snapshot

Divergence Estimation in the Presence of Incomplete Lineage Sorting and Migration

inferred← citeshttps://doi.org/10.1098/rspb.2020.0690openalex-snapshot

A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids

inferred← citeshttps://doi.org/10.1101/195180openalex-snapshot

Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

inferred← citeshttps://doi.org/10.1101/2020.07.31.231456openalex-snapshot

Developmental Incongruity as a Dynamical Representation of Heterochrony

inferred← citeshttps://doi.org/10.1101/2020.08.11.246108openalex-snapshot

Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere

inferred← citeshttps://doi.org/10.1101/2021.02.10.430600openalex-snapshot

Full-likelihood genomic analysis clarifies a complex history of species divergence and introgression: the example of the erato-sara group of Heliconius butterflies

inferred← citeshttps://doi.org/10.1101/2022.03.30.486147openalex-snapshot

Felidae call type and species identification based on acoustic features

inferred← citeshttps://doi.org/10.1101/2022.10.14.512273openalex-snapshot

Re-evaluating homoploid reticulate evolution in the annual sunflowers

inferred← citeshttps://doi.org/10.1101/2022.12.12.520105openalex-snapshot

Ancestry dynamics and trait selection in a designer cat breed

inferred← citeshttps://doi.org/10.1101/2023.01.09.523240openalex-snapshot

Phylogenomics reveals incomplete lineage sorting and ancient hybrid drove the radiation of macaques

inferred← citeshttps://doi.org/10.1101/2023.05.21.541635openalex-snapshot

Towards reliable detection of introgression in the presence of among-species rate variation

inferred← citeshttps://doi.org/10.1101/485904openalex-snapshot

Recombination-aware phylogenomics unravels the complex divergence of hybridizing species.

inferred← citeshttps://doi.org/10.1101/gr.272310.120openalex-snapshot

The genomic basis of evolutionary differentiation among honey bees

inferred← citeshttps://doi.org/10.1101/gr.275274.121openalex-snapshot

Genomic architecture constrained placental mammal X Chromosome evolution

inferred← citeshttps://doi.org/10.1101/gr.278546.123openalex-snapshot

Toward telomere-to-telomere cat genomes for precision medicine and conservation biology

inferred← citeshttps://doi.org/10.1111/1755-0998.70084openalex-snapshot

Optimising Genome‐Wide Detection of Runs of Homozygosity: Impacts of Reference Genome Quality and Sequencing Parameters on Inbreeding Assessment

inferred← citeshttps://doi.org/10.1111/1755-0998.70179openalex-snapshot

Imputation in the Wild: Genome‐Wide Robustness and Fine‐Scale Limitations of Low‐Coverage Genomes in Endangered Species

inferred← citeshttps://doi.org/10.1111/eva.12716openalex-snapshot

Introgression of Chinese haplotypes contributed to the improvement of Danish Duroc pigs

inferred← citeshttps://doi.org/10.1111/evo.13495openalex-snapshot

Evolution of morphological integration in the skull of Carnivora (Mammalia): Changes in Canidae lead to increased evolutionary potential of facial traits

inferred← citeshttps://doi.org/10.1111/jbi.13509openalex-snapshot

Reticulate evolutionary history of a Western Palaearctic Bat Complex explained by multiple mt DNA introgressions in secondary contacts

inferred← citeshttps://doi.org/10.1111/jeb.14181openalex-snapshot

Understanding the evolution of immune genes in jawed vertebrates

inferred← citeshttps://doi.org/10.1111/mec.16136openalex-snapshot

Ancient hybridization patterns between bighorn and thinhorn sheep

inferred← citeshttps://doi.org/10.1111/mec.16200openalex-snapshot

Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast

inferred← citeshttps://doi.org/10.1111/mec.17263openalex-snapshot

Positive selection in gamete interaction proteins in Carnivora

inferred← citeshttps://doi.org/10.1111/mec.17566openalex-snapshot

A Genomic Exploration of the Possible De‐Extirpation of the Zanzibar Leopard

inferred← citeshttps://doi.org/10.1111/mec.17600openalex-snapshot

Divergence in Regulatory Regions and Gene Duplications May Underlie Chronobiological Adaptation in Desert Tortoises

inferred← citeshttps://doi.org/10.1111/nyas.14471openalex-snapshot

Patterns and impacts of nonvertical evolution in eukaryotes: a paradigm shift

inferred← citeshttps://doi.org/10.1126/sciadv.abg0221openalex-snapshot

Genomic evidence for the Chinese mountain cat as a wildcat conspecific ( Felis silvestris bieti ) and its introgression to domestic cats

inferred← citeshttps://doi.org/10.1126/sciadv.adh9143openalex-snapshot

How genomic insights into the evolutionary history of clouded leopards inform their conservation

inferred← citeshttps://doi.org/10.1126/sciadv.adp5243openalex-snapshot

Insights on the evolution and adaptation toward high-altitude and cold environments in the snow leopard lineage

inferred← citeshttps://doi.org/10.1126/science.abn8153openalex-snapshot

Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

inferred← citeshttps://doi.org/10.1126/science.adk9688openalex-snapshot

CASTER: Direct species tree inference from whole-genome alignments

inferred← citeshttps://doi.org/10.1128/mbio.02133-24openalex-snapshot

Characterization of genome-wide phylogenetic conflict uncovers evolutionary modes of carnivorous fungi

inferred← citeshttps://doi.org/10.1139/cjes-2024-0137openalex-snapshot

The sabre-toothed cat Smilodon fatalis (Leidy, 1868) (Felidae, Machairodontinae) in the late Pleistocene–early Holocene of South America (Dolores Formation, Uruguay): new insights about its paleodistribution, taxonomy, and status of the genus

inferred← citeshttps://doi.org/10.1139/cjz-2020-0048openalex-snapshot

Comment on “Population genetics reveal Myotis keenii (Keen’s myotis) and Myotis evotis (long-eared myotis) to be a single species”

inferred← citeshttps://doi.org/10.1146/annurev-animal-022114-110847openalex-snapshot

Genetics and Evolution of Mammalian Coat Pigmentation

inferred← citeshttps://doi.org/10.1146/annurev-animal-061220-023149openalex-snapshot

Phylogenomics and the Genetic Architecture of the Placental Mammal Radiation

inferred← citeshttps://doi.org/10.1146/annurev-genet-021821-020805openalex-snapshot

Prevalence and Adaptive Impact of Introgression

inferred← citeshttps://doi.org/10.1186/s12863-026-01455-1openalex-snapshot

Chromosome-level assembly and annotation of the Jaguar (Panthera onca) genome

inferred← citeshttps://doi.org/10.1186/s12864-021-07899-2openalex-snapshot

Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management

inferred← citeshttps://doi.org/10.1186/s12870-024-05863-2openalex-snapshot

Phylogenomics and adaptive evolution of hydrophytic umbellifers (tribe Oenantheae, Apioideae) revealed from chloroplast genomes

inferred← citeshttps://doi.org/10.1186/s12870-026-08197-3openalex-snapshot

Gene loss and positively selected genes in chloroplast genomes reveal adaptive evolution in Styracaceae

inferred← citeshttps://doi.org/10.1186/s13059-025-03555-0openalex-snapshot

Genomic evidence for low genetic diversity but purging of strong deleterious variants in snow leopards

inferred← citeshttps://doi.org/10.1371/journal.pgen.1009095openalex-snapshot

Ancient and recent introgression shape the evolutionary history of pollinator adaptation and speciation in a model monkeyflower radiation (Mimulus section Erythranthe)

inferred← citeshttps://doi.org/10.1371/journal.pone.0240770openalex-snapshot

Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes

inferred← citeshttps://doi.org/10.1371/journal.pone.0269967openalex-snapshot

A unique single nucleotide polymorphism in Agouti Signalling Protein (ASIP) gene changes coat colour of Sri Lankan leopard (Panthera pardus kotiya) to dark black

inferred← citeshttps://doi.org/10.1534/genetics.118.301143openalex-snapshot

Human-Mediated Introgression of Haplotypes in a Modern Dairy Cattle Breed

inferred← citeshttps://doi.org/10.1643/h2020073openalex-snapshot

Contemporary Philosophy and Methods for Studying Speciation and Delimiting Species

inferred← citeshttps://doi.org/10.17520/biods.2022396openalex-snapshot

The evolutionary genetics, taxonomy, and conservation of the Chinese mountain cat

inferred← citeshttps://doi.org/10.20944/preprints202007.0328.v1openalex-snapshot

Fan-shaped Spectrums of Species and Paleopolyploidy for Crossbreeding Evolution

inferred← citeshttps://doi.org/10.20944/preprints202007.0328.v3openalex-snapshot

Fan-shaped Spectrums of Species and Paleopolyploidy for Foundation of Crossbreeding Evolution

inferred← citeshttps://doi.org/10.21203/rs.3.rs-1157812/v1openalex-snapshot

Population genomic analysis provides strong evidence of the past success and future strategies of South China tiger breeding

inferred← citeshttps://doi.org/10.2139/ssrn.5201854openalex-snapshot

Untangling Intergeneric Mito-Nuclear Discordance: Evidence for Ancient Introgression in Two Vole Genera, Clethrionomys and Alticola (Rodentia, Cricetidae)

inferred← citeshttps://doi.org/10.21638/spbu03.2022.202openalex-snapshot

Rate of spontaneous polyploidization in haploid yeast Saccharomyces cerevisiae

inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2021.038openalex-snapshot

Genome-wide analysis reveals signatures of complex introgressive gene flow in macaques (genus Macaca)

inferred← citeshttps://doi.org/10.2988/18-d-18-00011openalex-snapshot

Fossil Acropora prolifera (Lamarck, 1816) reveals coral hybridization is not only a recent phenomenon

inferred← citeshttps://doi.org/10.3389/fgene.2019.01241openalex-snapshot

Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary

inferred← citeshttps://doi.org/10.3389/fgene.2022.1028662openalex-snapshot

The computational implementation of a platform of relative identity-by-descent scores algorithm for introgressive mapping

inferred← citeshttps://doi.org/10.3389/fmicb.2020.01012openalex-snapshot

The Gene Catalog and Comparative Analysis of Gut Microbiome of Big Cats Provide New Insights on Panthera Species

inferred← citeshttps://doi.org/10.3390/agriculture12060844openalex-snapshot

Positive Selection and Adaptive Introgression of Haplotypes from Bos indicus Improve the Modern Bos taurus Cattle

inferred← citeshttps://doi.org/10.3390/ani15111562openalex-snapshot

First Mitogenome of the Critically Endangered Arabian Leopard (Panthera pardus nimr)

inferred← citeshttps://doi.org/10.3390/ani15131891openalex-snapshot

The Nariño Cat, the Tigrinas and Their Problematic Systematics and Phylogeography: The Real Story

inferred← citeshttps://doi.org/10.3897/zookeys.1181.108019openalex-snapshot

Utility of cytochrome c oxidase I for the deciphering of unstable phylogeny and taxonomy of gorals, genus Nemorhaedus Hamilton Smith, 1827 (Bovidae, Ovibovina)

inferred← citeshttps://doi.org/10.3917/pls.510.0084openalex-snapshot

Les félins, rois de l’hybridation

inferred← citeshttps://doi.org/10.6084/m9.figshare.15128160openalex-snapshot

Additional file 1 of Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management

inferred← citeshttps://doi.org/10.64898/2026.05.06.723294openalex-snapshot

Recent hybridisation and ghost introgression among a trio of island passerines

inferred← citeshttps://doi.org/10.64898/2026.08.03.742608openalex-snapshot

A comparative genomics framework for identifying historical population bottlenecks using olfactory receptor gene evolution

inferred← citeshttps://doi.org/10.70675/317d122fzc25dz4a20z9770z102788f4b6afopenalex-snapshot

The European wildcat as a model for the study of wildlife : focus on hybridization and the circulation of viruses

inferred← citeshttps://doi.org/10.70675/9d674e1dz7e53z4750z8fd9zde1c8041cd74openalex-snapshot

Modelling population dynamics in presence of hybridization

inferred← citeshttps://doi.org/10.70675/ef380bd2z14d5z4771za3e2z82b040f5da53openalex-snapshot

Impact phénotypique des réarrangements chromosomiques et évolution des génomes de levures

inferred← citeshttps://doi.org/10.7717/peerj.14428openalex-snapshot

Mitochondrial genomes assembled from non-invasive eDNA metagenomic scat samples in the endangered Amur tiger Panthera tigris altaica

inferred← citeshttps://doi.org/10.7717/peerj.17018openalex-snapshot

Unravelling the maternal evolutionary history of the African leopard (Panthera pardus pardus)

inferred← citeshttps://doi.org/10.7764/tesisuc/agr/63668openalex-snapshot

Filogeografía y estructura genética poblacional del Rayadito de cola espinosa (Aphrastura spinicauda), un paseriforme ampliamente distribuido en Chile (30°S – 56°S)

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