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Untangling Intergeneric Mito-Nuclear Discordance: Evidence for Ancient Introgression in Two Vole Genera, Clethrionomys and Alticola (Rodentia, Cricetidae)

https://doi.org/10.2139/ssrn.5201854

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.10742openalex-snapshot

Inferring phylogenetic structure, taxa hybridization, and divergence times within rock voles of subgenus Aschizomys (Cricetidae: Alticola) using quaddRAD sequencing and a cytb dataset

inferredcites →https://doi.org/10.1007/bf02111235openalex-snapshot

Transfer of mitochondrial DNA from the northern red-backed vole (Clethrionomys rutilus) to the bank vole (C. glareolus)

inferredcites →https://doi.org/10.1007/s10764-005-4372-0openalex-snapshot

Conservation Implications of Hybridization in African Cercopithecine Monkeys

inferredcites →https://doi.org/10.1016/j.cub.2011.05.058openalex-snapshot

Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline

inferredcites →https://doi.org/10.1016/j.cub.2021.10.052openalex-snapshot

Widespread introgression across a phylogeny of 155 Drosophila genomes

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.tree.2009.02.011openalex-snapshot

Gene flow and species delimitation

inferredcites →https://doi.org/10.1016/j.ympev.2014.02.019openalex-snapshot

Multilocus systematics and non-punctuated evolution of Holarctic Myodini (Rodentia: Arvicolinae)

inferredcites →https://doi.org/10.1016/j.ympev.2018.02.022openalex-snapshot

Inferring phylogenetic structure, hybridization and divergence times within Salmoninae (Teleostei: Salmonidae) using RAD-sequencing

inferredcites →https://doi.org/10.1016/s1055-7903(03)00248-3openalex-snapshot

Historical biogeography at the crossroads of the northern continents: molecular phylogenetics of red-backed voles (Rodentia: Arvicolinae)

inferredcites →https://doi.org/10.1038/s42003-018-0176-6openalex-snapshot

Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent

inferredcites →https://doi.org/10.1086/600082openalex-snapshot

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/bib/bbx108openalex-snapshot

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btq110openalex-snapshot

DensiTree: making sense of sets of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot

fastp: an ultra-fast all-in-one FASTQ preprocessor

inferredcites →https://doi.org/10.1093/genetics/iyab173openalex-snapshot

Phylogenomic approaches to detecting and characterizing introgression

inferredcites →https://doi.org/10.1093/jhered/esu033openalex-snapshot

Hybridization, Introgression, and the Nature of Species Boundaries

inferredcites →https://doi.org/10.1093/molbev/msi145openalex-snapshot

Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times

inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot

Testing for Ancient Admixture between Closely Related Populations

inferredcites →https://doi.org/10.1093/molbev/msw046openalex-snapshot

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

inferredcites →https://doi.org/10.1093/sysbio/syac011openalex-snapshot

Ghost Lineages Highly Influence the Interpretation of Introgression Tests

inferredcites →https://doi.org/10.1093/sysbio/syae028openalex-snapshot

Towards Reliable Detection of Introgression in the Presence of Among-Species Rate Variation

inferredcites →https://doi.org/10.1098/rsbl.2017.0729openalex-snapshot

Inverted intergeneric introgression between critically endangered kipunjis and yellow baboons in two disjunct populations

inferredcites →https://doi.org/10.1111/1749-4877.12415openalex-snapshot

Evolutionary history of mountain voles of the subgenus Aschizomys (Cricetidae, Rodentia), inferred from mitochondrial and nuclear markers

inferredcites →https://doi.org/10.1111/ede.12183openalex-snapshot

Sex beyond species: the first genetically analyzed case of intergeneric fertile hybridization in pinnipeds

inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00597.xopenalex-snapshot

PHYLOGEOGRAPHY AND INTROGRESSIVE HYBRIDIZATION: CHIPMUNKS (GENUS TAMIAS) IN THE NORTHERN ROCKY MOUNTAINS

inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot

Stacks: an analysis tool set for population genomics

inferredcites →https://doi.org/10.1111/mec.14077openalex-snapshot

quaddRAD: a new high‐multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage

inferredcites →https://doi.org/10.1126/sciadv.1700299openalex-snapshot

Genome-wide signatures of complex introgression and adaptive evolution in the big cats

inferredcites →https://doi.org/10.1134/s0012496609020185openalex-snapshot

Recent and ancient introgression of mitochondrial DNA between the red (Clethrionomys rutilus) and bank (Clethrionomys glareolus) voles (Rodentia, Cricetidae)

inferredcites →https://doi.org/10.1134/s1022795409050044openalex-snapshot

Genetic variation and phylogeography of the bank vole (Clethrionomys glareolus, Arvicolinae, Rodentia) in Russia with special reference to the introgression of the mtDNA of a closely related species, red-backed vole (Cl. rutilus)

inferredcites →https://doi.org/10.1134/s1062359016020035openalex-snapshot

Revision of the taxonomic position of the Olkhon mountain vole (Rodentia, Cricetidae)

inferredcites →https://doi.org/10.1146/annurev-ecolsys-102209-144644openalex-snapshot

Divergence with Gene Flow: Models and Data

inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132421openalex-snapshot

Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA

inferredcites →https://doi.org/10.1186/1471-2148-11-223openalex-snapshot

Reticulate evolution: frequent introgressive hybridization among chinese hares (genus lepus) revealed by analyses of multiple mitochondrial and nuclear DNA loci

inferredcites →https://doi.org/10.1186/s12862-018-1248-4openalex-snapshot

Genome-wide markers reveal a complex evolutionary history involving divergence and introgression in the Abert’s squirrel (Sciurus aberti) species group

inferredcites →https://doi.org/10.1186/s13059-018-1471-8openalex-snapshot

The genomic impact of historical hybridization with massive mitochondrial DNA introgression

inferredcites →https://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

inferredcites →https://doi.org/10.1371/journal.pone.0248198openalex-snapshot

A mitochondrial genome phylogeny of voles and lemmings (Rodentia: Arvicolinae): Evolutionary and taxonomic implications

inferredcites →https://doi.org/10.1554/0014-3820(2001)055[0859:pngcfm]2.0.co;2openalex-snapshot

PREDICTING NUCLEAR GENE COALESCENCE FROM MITOCHONDRIAL DATA: THE THREE-TIMES RULE

inferredcites →https://doi.org/10.18690/um.fnm.2.2022openalex-snapshot

Voles and Lemmings (Arvicolinae) of the Palaearctic Region

inferredcites →https://doi.org/10.3390/d17010061openalex-snapshot

Resolving Rapid Radiation of Voles and Lemmings (Arvicolinae: Cricetinae, Rodentia) with QuaddRAD Sequencing and Transcriptome Analysis

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