On the public citation graph

Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells

https://doi.org/10.1128/jvi.01908-10
0 signed · 109 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/eji.200535708openalex-snapshot
Single‐stranded small interfering RNA are more immunostimulatory than their double‐stranded counterparts: A central role for 2′‐hydroxyl uridines in immune responses
inferredcites →https://doi.org/10.1002/eji.200636362openalex-snapshot
A role for plasmacytoid dendritic cells in the rapid IL‐18‐dependent activation of NK cells following HSV‐1 infection
inferredcites →https://doi.org/10.1002/eji.200636617openalex-snapshot
Nucleic acid agonists for Toll‐like receptor 7 are defined by the presence of uridine ribonucleotides
inferredcites →https://doi.org/10.1007/s00239-009-9282-xopenalex-snapshot
Using Non-Homogeneous Models of Nucleotide Substitution to Identify Host Shift Events: Application to the Origin of the 1918 ‘Spanish’ Influenza Pandemic Virus
inferredcites →https://doi.org/10.1016/j.cell.2006.02.015openalex-snapshot
Pathogen Recognition and Innate Immunity
inferredcites →https://doi.org/10.1016/j.immuni.2005.04.010openalex-snapshot
Cell Type-Specific Involvement of RIG-I in Antiviral Response
inferredcites →https://doi.org/10.1016/j.immuni.2010.06.016openalex-snapshot
Type I Interferons Regulate Cytolytic Activity of Memory CD8+ T Cells in the Lung Airways during Respiratory Virus Challenge
inferredcites →https://doi.org/10.1016/j.virol.2008.08.018openalex-snapshot
Analysis of cytokine secretion from human plasmacytoid dendritic cells infected with H5N1 or low-pathogenicity influenza viruses
inferredcites →https://doi.org/10.1016/s0165-2478(02)00228-6openalex-snapshot
Recognition of pathogen-associated molecular patterns by TLR family
inferredcites →https://doi.org/10.1016/s1359-6101(00)00026-5openalex-snapshot
Molecular pathogenesis of influenza A virus infection and virus-induced regulation of cytokine gene expression
inferredcites →https://doi.org/10.1038/274334a0openalex-snapshot
Recent human influenza A (H1N1) viruses are closely related genetically to strains isolated in 1950
inferredcites →https://doi.org/10.1038/79747openalex-snapshot
Plasmacytoid dendritic cells activated by influenza virus and CD40L drive a potent TH1 polarization
inferredcites →https://doi.org/10.1038/nature05495openalex-snapshot
Aberrant innate immune response in lethal infection of macaques with the 1918 influenza virus
inferredcites →https://doi.org/10.1038/ni1003-939openalex-snapshot
Type I interferons promote cross-priming: more functions for old cytokines
inferredcites →https://doi.org/10.1038/ni1028openalex-snapshot
TLR9 signals after translocating from the ER to CpG DNA in the lysosome
inferredcites →https://doi.org/10.1038/ni1141openalex-snapshot
Plasmacytoid dendritic cells in immunity
inferredcites →https://doi.org/10.1038/ni1322openalex-snapshot
Lethal influenza infection in the absence of the natural killer cell receptor gene Ncr1
inferredcites →https://doi.org/10.1038/ni978openalex-snapshot
Cross-priming of CD8+ T cells stimulated by virus-induced type I interferon
inferredcites →https://doi.org/10.1073/pnas.0400937101openalex-snapshot
Recognition of single-stranded RNA viruses by Toll-like receptor 7
inferredcites →https://doi.org/10.1073/pnas.0406933101openalex-snapshot
Role of a transductional-transcriptional processor complex involving MyD88 and IRF-7 in Toll-like receptor signaling
inferredcites →https://doi.org/10.1073/pnas.100133697openalex-snapshot
A DNA transfection system for generation of influenza A virus from eight plasmids
inferredcites →https://doi.org/10.1084/jem.190.8.1155openalex-snapshot
Human Dendritic Cells Mediate Cellular Apoptosis via Tumor Necrosis Factor–Related Apoptosis-Inducing Ligand (Trail)
inferredcites →https://doi.org/10.1084/jem.192.2.219openalex-snapshot
Natural Interferon α/β–Producing Cells Link Innate and Adaptive Immunity
inferredcites →https://doi.org/10.1084/jem.20050914openalex-snapshot
Nucleic acids of mammalian origin can act as endogenous ligands for Toll-like receptors and may promote systemic lupus erythematosus
inferredcites →https://doi.org/10.1084/jem.20051395openalex-snapshot
Production of type I interferons
inferredcites →https://doi.org/10.1111/j.1365-2567.2005.02261.xopenalex-snapshot
Induction of interferon‐γ from natural killer cells by immunostimulatory CpG DNA is mediated through plasmacytoid‐dendritic‐cell‐produced interferon‐α and tumour necrosis factor‐α
inferredcites →https://doi.org/10.1111/j.1462-5822.2006.00841.xopenalex-snapshot
IFN? induction by influenza A virus is mediated by RIG-I which is regulated by the viral NS1 protein
inferredcites →https://doi.org/10.1126/science.1093616openalex-snapshot
Innate Antiviral Responses by Means of TLR7-Mediated Recognition of Single-Stranded RNA
inferredcites →https://doi.org/10.1126/science.1093620openalex-snapshot
Species-Specific Recognition of Single-Stranded RNA via Toll-like Receptor 7 and 8
inferredcites →https://doi.org/10.1126/science.1187816openalex-snapshot
Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
inferredcites →https://doi.org/10.1128/jvi.72.11.8550-8558.1998openalex-snapshot
The Role of Interferon in Influenza Virus Tissue Tropism
inferredcites →https://doi.org/10.1172/jci26032openalex-snapshot
Endocytosis of HIV-1 activates plasmacytoid dendritic cells via Toll-like receptor- viral RNA interactions
inferredcites →https://doi.org/10.1172/jci33583openalex-snapshot
Plasmacytoid dendritic cells induce NK cell–dependent, tumor antigen–specific T cell cross-priming and tumor regression in mice
inferredcites →https://doi.org/10.1182/blood-2005-08-3419openalex-snapshot
Human plasmacytoid predendritic cells activate NK cells through glucocorticoid-induced tumor necrosis factor receptor-ligand (GITRL)
inferredcites →https://doi.org/10.1189/jlb.0807511openalex-snapshot
Two distinct activation states of plasmacytoid dendritic cells induced by influenza virus and CpG 1826 oligonucleotide
inferredcites →https://doi.org/10.1371/journal.pone.0005969openalex-snapshot
Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System
inferredcites →https://doi.org/10.1371/journal.ppat.1000079openalex-snapshot
Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses
inferredcites →https://doi.org/10.2307/4592142openalex-snapshot
U.S. Epizootic of Equine Influenza, 1963
inferredcites →https://doi.org/10.4049/jimmunol.154.6.2764openalex-snapshot
Activation of IFN-alpha, IFN-gamma, MxA, and IFN regulatory factor 1 genes in influenza A virus-infected human peripheral blood mononuclear cells.
inferredcites →https://doi.org/10.4049/jimmunol.165.8.4165openalex-snapshot
Phosphorothioate Backbone Modification Modulates Macrophage Activation by CpG DNA
inferredcites →https://doi.org/10.4049/jimmunol.168.9.4531openalex-snapshot
Quantitative Expression of Toll-Like Receptor 1–10 mRNA in Cellular Subsets of Human Peripheral Blood Mononuclear Cells and Sensitivity to CpG Oligodeoxynucleotides
inferredcites →https://doi.org/10.4049/jimmunol.174.2.727openalex-snapshot
The Reciprocal Interaction of NK Cells with Plasmacytoid or Myeloid Dendritic Cells Profoundly Affects Innate Resistance Functions
inferredcites →https://doi.org/10.4049/jimmunol.176.1.248openalex-snapshot
Virus or TLR Agonists Induce TRAIL-Mediated Cytotoxic Activity of Plasmacytoid Dendritic Cells
inferredcites →https://doi.org/10.4049/jimmunol.178.12.7658openalex-snapshot
Single-Stranded RNA Derived from HIV-1 Serves as a Potent Activator of NK Cells
inferredcites →https://doi.org/10.4049/jimmunol.180.6.3729openalex-snapshot
Identification of RNA Sequence Motifs Stimulating Sequence-Specific TLR8-Dependent Immune Responses
inferredcites →https://doi.org/10.4049/jimmunol.94.4.563openalex-snapshot
Studies of Antibodies to 1956 and 1963 Equine Influenza Viruses in Horses and Man
inferredcites →https://doi.org/10.7589/0090-3558-6.4.239openalex-snapshot
Influenza in Animals: Its Possible Public Health Significance

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3611280openalex-extracted
inferred← citeshttps://doi.org/10.1002/3527600906.mcb.20120059openalex-snapshot
Synthetic Biology Approaches for Vaccine Development
inferred← citeshttps://doi.org/10.1007/978-1-4614-4433-6_3openalex-snapshot
Plasmacytoid Dendritic Cells in HIV Infection
inferred← citeshttps://doi.org/10.1007/978-3-319-61569-1_18openalex-snapshot
Evolutionary Constraints on Coding Sequences at the Nucleotidic Level: A Statistical Physics Approach
inferred← citeshttps://doi.org/10.1007/s00011-020-01377-3openalex-snapshot
SARS-CoV-2 will constantly sweep its tracks: a vaccine containing CpG motifs in ‘lasso’ for the multi-faced virus
inferred← citeshttps://doi.org/10.1016/b978-0-12-411584-2.00019-6openalex-snapshot
Impact of the host on plant virus evolution
inferred← citeshttps://doi.org/10.1016/j.coisb.2016.12.008openalex-snapshot
Innate immune driven evolution via immunostimulatory RNA: Viruses that mimic hosts, tumors that mimic viruses
inferred← citeshttps://doi.org/10.1016/j.isci.2026.116712openalex-snapshot
The genomic sequence of packaged viral ribonucleic acid predicts mucosal HIV-1 transmission fitness
inferred← citeshttps://doi.org/10.1016/j.it.2016.10.006openalex-snapshot
Sequence-Specific Sensing of Nucleic Acids
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.105067openalex-snapshot
Evolutionary perspectives and adaptation dynamics of human seasonal influenza viruses from 2009 to 2019: An insight from codon usage
inferred← citeshttps://doi.org/10.1016/j.meegid.2024.105612openalex-snapshot
The evolutionary and genetic patterns of African swine fever virus
inferred← citeshttps://doi.org/10.1016/j.meegid.2025.105834openalex-snapshot
Single-cell RNA sequencing in high-burden viral respiratory infections: Decoding immune cell subsets and immune-related differential gene expression
inferred← citeshttps://doi.org/10.1016/j.mib.2015.06.015openalex-snapshot
Viral evolution: beyond drift and shift
inferred← citeshttps://doi.org/10.1016/j.virol.2015.11.007openalex-snapshot
Innate immune system activation by viral RNA: How to predict it?
inferred← citeshttps://doi.org/10.1016/s1734-1140(12)70899-xopenalex-snapshot
Synthetic immunostimulatory oligonucleotides in experimental and clinical practice
inferred← citeshttps://doi.org/10.1038/gt.2017.76openalex-snapshot
Time-series oligonucleotide count to assign antiviral siRNAs with long utility fit in the big data era
inferred← citeshttps://doi.org/10.1038/s41598-017-08716-1openalex-snapshot
The CpG dinucleotide content of the HIV-1 envelope gene may predict disease progression
inferred← citeshttps://doi.org/10.1038/s41598-023-34730-7openalex-snapshot
Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma
inferred← citeshttps://doi.org/10.1038/srep36197openalex-snapshot
Directional and reoccurring sequence change in zoonotic RNA virus genomes visualized by time-series word count
inferred← citeshttps://doi.org/10.1073/pnas.1113300109openalex-snapshot
Viral reassortment as an information exchange between viral segments
inferred← citeshttps://doi.org/10.1073/pnas.1121423109openalex-snapshot
Lipid-derived nanoparticles for immunostimulatory RNA adjuvant delivery
inferred← citeshttps://doi.org/10.1073/pnas.1402285111openalex-snapshot
Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses
inferred← citeshttps://doi.org/10.1073/pnas.1517584112openalex-snapshot
Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells
inferred← citeshttps://doi.org/10.1093/molbev/msab036openalex-snapshot
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2
inferred← citeshttps://doi.org/10.1093/molbev/msac029openalex-snapshot
The Slowing Rate of CpG Depletion in SARS-CoV-2 Genomes Is Consistent with Adaptations to the Human Host
inferred← citeshttps://doi.org/10.1093/molbev/msr202openalex-snapshot
Statistics and Truth in Phylogenomics
inferred← citeshttps://doi.org/10.1093/molbev/msw205openalex-snapshot
Source of CpG Depletion in the HIV-1 Genome
inferred← citeshttps://doi.org/10.1093/nar/gkz831openalex-snapshot
Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies
inferred← citeshttps://doi.org/10.1093/ve/veag062openalex-snapshot
Comparative analysis of codon usage bias revealed natural selection-driven evolution and host adaptation of infectious haematopoietic necrosis virus
inferred← citeshttps://doi.org/10.1093/ve/vey021openalex-snapshot
Exploratory re-encoding of yellow fever virus genome: new insights for the design of live-attenuated viruses
inferred← citeshttps://doi.org/10.1093/ve/vez038openalex-snapshot
Dinucleotide evolutionary dynamics in influenza A virus
inferred← citeshttps://doi.org/10.1099/mgen.0.001186openalex-snapshot
Systematic analysis of the codon usage patterns of African swine fever virus genome coding sequences reveals its host adaptation phenotype
inferred← citeshttps://doi.org/10.1101/057026openalex-snapshot
Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV
inferred← citeshttps://doi.org/10.1101/2021.02.23.432596openalex-snapshot
Unsupervised Clustering characterizes the CPG dinucleotides distribution of the Andes hantavirus
inferred← citeshttps://doi.org/10.1101/256610openalex-snapshot
Exploratory re-encoding of Yellow Fever Virus genome: new insights for the design of live-attenuated viruses
inferred← citeshttps://doi.org/10.1111/irv.12075openalex-snapshot
Virus‐specific factors associated with zoonotic and pandemic potential
inferred← citeshttps://doi.org/10.1111/irv.12412openalex-snapshot
The ecology and adaptive evolution of influenza A interspecies transmission
inferred← citeshttps://doi.org/10.1128/jvi.00087-14openalex-snapshot
Hepatitis A Virus Adaptation to Cellular Shutoff Is Driven by Dynamic Adjustments of Codon Usage and Results in the Selection of Populations with Altered Capsids
inferred← citeshttps://doi.org/10.1128/jvi.00189-17openalex-snapshot
Improved Prefusion Stability, Optimized Codon Usage, and Augmented Virion Packaging Enhance the Immunogenicity of Respiratory Syncytial Virus Fusion Protein in a Vectored-Vaccine Candidate
inferred← citeshttps://doi.org/10.1128/mbio.01222-18openalex-snapshot
Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools
inferred← citeshttps://doi.org/10.1128/mbio.02238-20openalex-snapshot
Mechanisms of Attenuation by Genetic Recoding of Viruses
inferred← citeshttps://doi.org/10.12932/ap-130121-1037openalex-snapshot
Innate immunity in COVID-19: Drivers of pathogenesis and potential therapeutic targets
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007420openalex-snapshot
Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV
inferred← citeshttps://doi.org/10.1371/journal.pone.0027631openalex-snapshot
Identifying Hosts of Families of Viruses: A Machine Learning Approach
inferred← citeshttps://doi.org/10.1371/journal.pone.0044557openalex-snapshot
The Genomic Signature of Human Rhinoviruses A, B and C
inferred← citeshttps://doi.org/10.1371/journal.pone.0074109openalex-snapshot
CpG Usage in RNA Viruses: Data and Hypotheses
inferred← citeshttps://doi.org/10.1371/journal.pone.0154376openalex-snapshot
Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses
inferred← citeshttps://doi.org/10.1371/journal.ppat.1005553openalex-snapshot
CD4 Receptor is a Key Determinant of Divergent HIV-1 Sensing by Plasmacytoid Dendritic Cells
inferred← citeshttps://doi.org/10.1371/journal.ppat.1006450openalex-snapshot
Getting the flu: 5 key facts about influenza virus evolution
inferred← citeshttps://doi.org/10.18632/oncotarget.780openalex-snapshot
The Maintenance of Epigenetic States by p53: The Guardian of the Epigenome
inferred← citeshttps://doi.org/10.21203/rs.3.rs-354704/v1openalex-snapshot
CpG di-nucleotide Odds Ratio Measures Drive Unsupervised Clustering to Characterize the Andes Hantavirus
inferred← citeshttps://doi.org/10.3389/fimmu.2013.00468openalex-snapshot
Sensing Microbial RNA in the Cytosol
inferred← citeshttps://doi.org/10.3389/fimmu.2018.00245openalex-snapshot
Respiratory Influenza A Virus Infection Triggers Local and Systemic Natural Killer Cell Activation via Toll-Like Receptor 7
inferred← citeshttps://doi.org/10.3389/fimmu.2018.02017openalex-snapshot
Influenza Virus—Host Co-evolution. A Predator-Prey Relationship?
inferred← citeshttps://doi.org/10.3389/fmicb.2021.655228openalex-snapshot
Host Adaptive Evolution of Avian-Origin H3N2 Canine Influenza Virus
inferred← citeshttps://doi.org/10.3390/ijms20122881openalex-snapshot
Genetic Analysis and Evolutionary Changes of the Torque teno sus Virus
inferred← citeshttps://doi.org/10.3390/v14112499openalex-snapshot
SARS-CoV-2 Variants of Concern and Variations within Their Genome Architecture: Does Nucleotide Distribution and Mutation Rate Alter the Functionality and Evolution of the Virus?
inferred← citeshttps://doi.org/10.3390/vaccines13010078openalex-snapshot
Elegant and Innovative Recoding Strategies for Advancing Vaccine Development
inferred← citeshttps://doi.org/10.4049/jimmunol.1003737openalex-snapshot
Suppression of TLR9 Immunostimulatory Motifs in the Genome of a Gammaherpesvirus
inferred← citeshttps://doi.org/10.70675/644c4553z68c4z4276zab57z19411aaad8bbopenalex-snapshot
Hypothèses sur l'implication du biais nucléotidique des lentivirus dans le développement du SIDA et nouvelles stratégies d'atténuation du VIH-1
inferred← citeshttps://doi.org/10.70675/d3cc34d0z2cb7z4b75z831bz1574ac11f93copenalex-snapshot
Attenuation of viscerotropic flaviviruses
inferred← citeshttps://doi.org/10.7554/elife.29112openalex-snapshot
CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.