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Portable sequencing as a teaching tool in conservation and biodiversity research

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/nature11018openalex-snapshot
Approaching a state shift in Earth’s biosphere
inferredcites →https://doi.org/10.1038/s41551-016-0009openalex-snapshot
Hand-powered ultralow-cost paper centrifuge
inferredcites →https://doi.org/10.1093/biosci/bix036openalex-snapshot
Teaching Biology in the Field: Importance, Challenges, and Solutions
inferredcites →https://doi.org/10.1093/biosci/biy108openalex-snapshot
A Framework for Informal STEM Education Outreach at Field Stations
inferredcites →https://doi.org/10.1093/gigascience/giy033openalex-snapshot
Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
inferredcites →https://doi.org/10.1093/gigascience/giz006openalex-snapshot
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
inferredcites →https://doi.org/10.1101/030742openalex-snapshot
What’s in my pot? Real-time species identification on the MinION™
inferredcites →https://doi.org/10.1101/227439openalex-snapshot
Oxford Nanopore sequencing in a research-based undergraduate course
inferredcites →https://doi.org/10.1101/581728openalex-snapshot
Genomics in the jungle: using portable sequencing as a teaching tool in field courses
inferredcites →https://doi.org/10.1101/650614openalex-snapshot
Next-generation in situ conservation and educational outreach in Madagascar using a mobile genetics lab
inferredcites →https://doi.org/10.1111/1755-0998.12998openalex-snapshot
The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era
inferredcites →https://doi.org/10.1126/science.1251817openalex-snapshot
Defaunation in the Anthropocene
inferredcites →https://doi.org/10.1128/aem.01368-19openalex-snapshot
Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens
inferredcites →https://doi.org/10.1128/jmbe.v17i3.1142openalex-snapshot
A Model for a Course-Based Undergraduate Research Experience (CURE) in a Field Setting
inferredcites →https://doi.org/10.1371/journal.pone.0184741openalex-snapshot
On site DNA barcoding by nanopore sequencing
inferredcites →https://doi.org/10.20944/preprints201905.0113.v1openalex-snapshot
Introducing DNA Sequencing to the Next Generation on a Research Vessel Sailing the Bering Sea Through a Storm
inferredcites →https://doi.org/10.3389/fgene.2019.00095openalex-snapshot
Genomics for All: International Open Science Genomics Projects and Capacity Building in the Developing World
inferredcites →https://doi.org/10.3390/genes10110858openalex-snapshot
Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions
inferredcites →https://doi.org/10.3402/gha.v9.31026openalex-snapshot
Building local capacity for genomics research in Africa: recommendations from analysis of publications in Sub-Saharan Africa from 2004 to 2013
inferredcites →https://doi.org/10.5281/zenodo.13514704openalex-snapshot
Next-generation in situ conservation and capacity building in Madagascar using a mobile genetics lab
inferredcites →https://doi.org/10.7554/elife.14258openalex-snapshot
Using mobile sequencers in an academic classroom

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A new species of Purpureocillium (Ophiocordycipitaceae) fungus parasitizing trapdoor spiders in Brazil’s Atlantic Forest and its associated microbiome revealed through in situ “taxogenomics”
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Going Mobile: Using Portable Genomic Technologies for PCR ‐Free In Situ Species Identification and Real‐Time Molecular Systematics
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Expanding the temporal and spatial scales of environmental DNA research with autonomous sampling
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Nanopore environmental DNA sequencing of catch water for estimating species composition in demersal bottom trawl fisheries
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Wildlife Population Genomics: Applications and Approaches
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10 Understanding How and Where Pathogens Emerge: Preparedness and Response for Zoonotic Diseases
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DNA Barcoding in Orchids as an Effective Tool for Species Identification
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Amazon Biobank: a collaborative genetic database for bioeconomy development
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Next-generation technologies applied to age-old challenges in Madagascar
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From Pixels to Molecules: Innovative Strategies for Invasive Alien Plant Species Monitoring and Management
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Classroom to career: Implementation considerations for engaging students with meaningful DNA sequencing learning opportunities
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Metabarcoding for Biodiversity Estimation
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Investigating human microorganisms using metagenomic approaches
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Discovering marine biodiversity in the 21st century
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Engaging the next generation of plant geneticists through sustained research: an overview of a post-16 project
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Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment
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Decoding the Peruvian Amazon with in situ DNA barcoding of vertebrate and plant taxa
inferred← citeshttps://doi.org/10.1038/s41598-022-14121-0openalex-snapshot
Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum
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A high-quality genome assembly highlights the evolutionary history of the great bustard (Otis tarda, Otidiformes)
inferred← citeshttps://doi.org/10.1038/s44319-024-00264-wopenalex-snapshot
Environmental DNA without borders
inferred← citeshttps://doi.org/10.1042/etls20200287openalex-snapshot
Nanopore sequencing in non-human forensic genetics
inferred← citeshttps://doi.org/10.1073/pnas.2115644119openalex-snapshot
Darwinian genomics and diversity in the tree of life
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf259openalex-snapshot
High-Quality De Novo Genome Assembly for the Galápagos Endemic Lava Gull Using Oxford Nanopore Technologies
inferred← citeshttps://doi.org/10.1093/g3journal/jkag004openalex-snapshot
First whole-genome assembly of the Galápagos Petrel ( Pterodroma phaeopygia ) using Oxford Nanopore sequencing to advance conservation genomics in a critically endangered seabird
inferred← citeshttps://doi.org/10.1093/gigascience/giaa058openalex-snapshot
Education in the genomics era: Generating high-quality genome assemblies in university courses
inferred← citeshttps://doi.org/10.1101/2021.05.17.444523openalex-snapshot
DiversityScanner: Robotic discovery of small invertebrates with machine learning methods
inferred← citeshttps://doi.org/10.1101/2024.06.27.601086openalex-snapshot
The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation
inferred← citeshttps://doi.org/10.1101/2024.09.30.615830openalex-snapshot
Miniaturised laboratorial equipment as a solution to implement conservation genetics tools and education in West African countries with limited infrastructures: an application to the study of illegal wildlife trade in Guinea-Bissau
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Amazon Biobank: Assessing the Implementation of a Blockchain-Based Genomic Database
inferred← citeshttps://doi.org/10.1109/hpca68181.2026.11408512openalex-snapshot
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis
inferred← citeshttps://doi.org/10.1111/1755-0998.12998openalex-snapshot
The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era
inferred← citeshttps://doi.org/10.1111/1755-0998.13567openalex-snapshot
DiversityScanner: Robotic handling of small invertebrates with machine learning methods
inferred← citeshttps://doi.org/10.1111/1755-0998.70091openalex-snapshot
Fast, Flexible, Feasible: A Transparent Framework for Evaluating eDNA Workflow Trade‐Offs in Resource‐Limited Settings
inferred← citeshttps://doi.org/10.1111/1755-0998.70144openalex-snapshot
DIY : A Practical Field‐to‐Sequencer Workflow for Metabarcoding the Diet of Terrestrial Carnivore Species
inferred← citeshttps://doi.org/10.1111/cobi.70165openalex-snapshot
Using miniaturized laboratory equipment and DNA barcoding to improve conservation genetics training and identify illegally traded species
inferred← citeshttps://doi.org/10.1111/csp2.13053openalex-snapshot
A pragmatic approach for integrating molecular tools into biodiversity conservation
inferred← citeshttps://doi.org/10.1111/csp2.13095openalex-snapshot
Population genetics for insect conservation and control
inferred← citeshttps://doi.org/10.1111/mec.16554openalex-snapshot
Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates
inferred← citeshttps://doi.org/10.1126/science.abc0017openalex-snapshot
Rigorous wildlife disease surveillance
inferred← citeshttps://doi.org/10.1128/jmbe.00142-21openalex-snapshot
The Diverse World of Protists—an Ideal Community with which to Introduce Microscopy in the Microbiology Teaching Laboratory
inferred← citeshttps://doi.org/10.1155/tswj/3495506openalex-snapshot
Integrative Bioinformatics Approaches in Environmental Biotechnology: A Review
inferred← citeshttps://doi.org/10.1186/s12864-024-10899-7openalex-snapshot
The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation
inferred← citeshttps://doi.org/10.1186/s12915-021-01141-xopenalex-snapshot
ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone
inferred← citeshttps://doi.org/10.1186/s13059-026-04195-8openalex-snapshot
Targeted chromosomal sequencing of wild bonobos identifies a genetically distinct subpopulation east of the Lomami river
inferred← citeshttps://doi.org/10.1186/s13071-022-05255-1openalex-snapshot
A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
inferred← citeshttps://doi.org/10.1371/journal.pone.0291874openalex-snapshot
The United States dried seahorse trade: A comparison of traditional Chinese medicine and ecommerce-curio markets using molecular identification
inferred← citeshttps://doi.org/10.1371/journal.pone.0296305openalex-snapshot
Lack of local genetic representation in one of the regions with the highest bird species richness, the Peruvian Amazonia
inferred← citeshttps://doi.org/10.1371/journal.pone.0333994openalex-snapshot
Evaluation of nanopore sequencing for increasing accessibility of eDNA studies in biodiverse countries
inferred← citeshttps://doi.org/10.1371/journal.pone.0336127openalex-snapshot
Investigating epigenetic biomarkers of age, sex, and disease in captive South African cheetahs (Acinonyx jubatus jubatus)
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Real‐time genomics for One Health
inferred← citeshttps://doi.org/10.1534/g3.120.401205openalex-snapshot
Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish ( Betta splendens ) in a University Master’s Course
inferred← citeshttps://doi.org/10.2139/ssrn.5009994openalex-snapshot
GENETIC CRYPTOCURRENCY -A HUMAN SAVER
inferred← citeshttps://doi.org/10.3389/fcosc.2025.1521050openalex-snapshot
Decentralizing genetic testing for biodiversity monitoring and biosurveillance with the Nucleic Acid Barcode Identification Tool (NABIT)
inferred← citeshttps://doi.org/10.3389/fmars.2021.640527openalex-snapshot
Fieldable Environmental DNA Sequencing to Assess Jellyfish Biodiversity in Nearshore Waters of the Florida Keys, United States
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Accelerating ocean species discovery and laying the foundations for the future of marine biodiversity research and monitoring
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A Latin American perspective on neurodiplomacy
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Chloroplast Genome Draft of Dryobalanops aromatica Generated Using Oxford Nanopore Technology and Its Potential Application for Phylogenetic Study
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Takeaways from Mobile DNA Barcoding with BentoLab and MinION
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Real-Time On-Site Diagnosis of Quarantine Pathogens in Plant Tissues by Nanopore-Based Sequencing
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Using DNA Sequences and Phylogenetic Trees as Tools for Teaching Entomology to Undergraduate Students: A Simple Approach
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Biocultural Rights, Indigenous Peoples And Local Communities
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Biocultural Rights and Protocols in the Pacific
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Additional file 1 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
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Additional file 2 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
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Additional file 3 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
inferred← citeshttps://doi.org/10.6084/m9.figshare.19646284openalex-snapshot
Additional file 4 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
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