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The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Molecular cloning: A laboratory manual
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DNA elimination in tetrahymena: A developmental process involving extensive breakage and rejoining of DNA at defined sites
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Structures of the Euplotes crassusTec1 and Tec2 elements: identification of putative transposase coding regions
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Nowa1p and Nowa2p: Novel Putative RNA Binding Proteins Involved in trans-Nuclear Crosstalk in Paramecium tetraurelia
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Large-scale genome remodelling by the developmentally programmed elimination of germ line sequences in the ciliate Paramecium
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Remembrance of things past retrieved from the Paramecium genome
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Developmental genome rearrangements in ciliates: a natural genomic subtraction mediated by non-coding transcripts
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Developmental Genome Reorganization in Ciliated Protozoa: The Transposon Link
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RNA interference by feeding in Paramecium
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Resident aliens: the Tc1/ mariner superfamily of transposable elements
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Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
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The SM19 gene, required for duplication of basal bodies in Paramecium, encodes a novel tubulin, η-tubulin
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Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process
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Specific interference by ingested dsRNA
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piggyBac can bypass DNA synthesis during cut and paste transposition
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
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RNA-mediated epigenetic programming of a genome-rearrangement pathway
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Translational control of intron splicing in eukaryotes
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Selfish genetic elements, genetic conflict, and evolutionary innovation
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Assembly of phage lambda in vitro.
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In vivo DNA loops in araCBAD: size limits and helical repeat.
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DNA length, bending, and twisting constraints on IS50 transposition.
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A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif.
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Developmentally excised sequences in micronuclear DNA of Paramecium.
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Keeping the Soma Free of Transposons: Programmed DNA Elimination in Ciliates
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Coding Properties of Macronuclear DNA Molecules in Sterkiella nova (Oxytricha nova)
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A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila
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APE: Analyses of Phylogenetics and Evolution in R language
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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Product analysis illuminates the final steps of IES deletion in Tetrahymena thermophila
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A Mendelian Mutation Affecting Mating-Type Determination Also Affects Developmental Genomic Rearrangements in Paramecium tetraurelita
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A Mutation in Paramecium tetraurelia Reveals Functional and Structural Features of Developmentally Excised DNA Elements
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A Mutation in the Flanking 5′-TA-3′ Dinucleotide Prevents Excision of an Internal Eliminated Sequence From the Paramecium tetraurelia Genome
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The Cloning and Molecular Analysis of pawn-B in Paramecium tetraurelia
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The Origins of Eukaryotic Gene Structure
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Genetic Diversity in the Paramecium aurelia Species Complex
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Consensus inverted terminal repeat sequence ofParameciumlESs: resemblance to termini of Tc1 -related andEuplotesTec transposons
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Deletion endpoint allele-specificity in the developmentally regulated elimination of an internal sequence (IES) in Paramecium
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The evolutionary scrambling and developmental unscrambling of germline genes in hypotrichous ciliates
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A novel family of mobile genetic elements is limited to the germline genome in Tetrahymena thermophila
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The diversity of splicing modifiers acting on A-1 bulged 5′-splice sites reveals rules for rational drug design
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia
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Developmentally programmed DNA splicing in Paramecium reveals short-distance crosstalk between DNA cleavage sites
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Gene repression by minimal lac loops in vivo
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ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
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BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
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Group II Introns: Mobile Ribozymes that Invade DNA
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Cold Spring Harbor Perspectives in Biology
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Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia
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PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia
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Induction of specific macronuclear developmental mutations by microinjection of a cloned telomeric gene in Paramecium primaurelia.
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Circular forms of developmentally excised DNA in Euplotes crassus have a heteroduplex junction.
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Elimination of Tec elements involves a novel excision process.
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The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures.
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Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
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Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
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BLAT —The BLAST -Like Alignment Tool
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WebLogo: A Sequence Logo Generator: Figure 1
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Molecular Evolution of piRNA and Transposon Control Pathways in Drosophila
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RNA‐guided DNA rearrangements in ciliates: Is the best genome defence a good offence?
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Micronuclear DNA from Paramecium tetraurelia: Serotype 51 A Gene Has Internally Eliminated Sequences
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A Functional Role for Transposases in a Large Eukaryotic Genome
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A Small-RNA Perspective on Gametogenesis, Fertilization, and Early Zygotic Development
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The Proceedings of the National Academy of Sciences
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Insertion Sequences Revisited
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Tec3, a New Developmentally Eliminated DNA Element in Euplotes crassus
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Developmentally Regulated Chromosome Fragmentation Linked to Imprecise Elimination of Repeated Sequences in Paramecia
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A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan Tetrahymena thermophila
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Analysis of Paramecium tetraurelia A-51 Surface Antigen Gene Mutants Reveals Positive-Feedback Mechanisms for Maintenance of Expression and Temperature-Induced Activation
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Volatility of Internal Eliminated Segments in Germ Line Genes of Hypotrichous Ciliates
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Homology-Dependent Maternal Inhibition of Developmental Excision of Internal Eliminated Sequences in Paramecium tetraurelia
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Timing of Developmentally Programmed Excision and Circularization of Paramecium Internal Eliminated Sequences
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Processing of Double-Strand Breaks Is Involved in the Precise Excision ofParameciumInternal Eliminated Sequences
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RNA-Mediated Programming of Developmental Genome Rearrangements in Paramecium tetraurelia
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Mendelian and non-mendelian mutations affecting surface antigen expression in Paramecium tetraurelia.
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DNA Elimination in Ciliates: Transposon Domestication and Genome Surveillance
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RNA-Guided DNA Deletion in Tetrahymena: An RNAi-Based Mechanism for Programmed Genome Rearrangements
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Genome Remodeling in Ciliated Protozoa
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Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia
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Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
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The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution
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Highly Precise and Developmentally Programmed Genome Assembly in Paramecium Requires Ligase IV–Dependent End Joining
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Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila
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Ty1 Copy Number Dynamics in Saccharomyces
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R: A Language and Environment for Statistical Computing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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An overview of genetic manipulation tools in the studies of ciliates, with emphasis on gene knockout, knockdown, and overexpression
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RNA ‐Mediated Somatic Genome Rearrangement in Ciliates
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The Silencing Mechanisms Inhibiting Transposable Element Activity in Somatic and Germ Cells
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Transposable elements: Self‐seekers of the germline, team‐players of the soma
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On the path to genetic novelties: insights from programmed DNA elimination and RNA splicing
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Small‐RNA ‐guided histone modifications and somatic genome elimination in ciliates
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Non-mendelian Inheritance and Evolution in Ciliates with a Focus on Transposons
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Communication in Tetrahymena Reproduction
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RNA-Guided Genome Editing
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Programmed Genome Processing in Ciliates
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Programmed genome rearrangements in ciliates
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RNA-mediated transgenerational inheritance in ciliates and plants
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A paradox: rapid evolution rates of germline-limited sequences are associated with conserved patterns of rearrangements in cryptic species of Chilodonella uncinata (Protista, Ciliophora)
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Genes and proteins expressed at different life cycle stages in the model protist Euplotes vannus revealed by both transcriptomic and proteomic approaches
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From germline genome to highly fragmented somatic genome: genome-wide DNA rearrangement during the sexual process in ciliated protists
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Unicellular Eukaryotes as Models in Cell and Molecular Biology
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Paramecium Molecular Evolution
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Paramecium Molecular Evolution
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The Challenges of Genome-Wide Studies in a Unicellular Eukaryote With Two Nuclear Genomes
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Early developmental, meiosis-specific proteins — Spo11, Msh4-1, and Msh5 — Affect subsequent genome reorganization in Paramecium tetraurelia
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Piwi-Interacting RNAs Protect DNA against Loss during Oxytricha Genome Rearrangement
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Genomes on the Edge: Programmed Genome Instability in Ciliates
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The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development
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Circular Concatemers of Ultra-Short DNA Segments Produce Regulatory RNAs
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Dicer-like Enzymes with Sequence Cleavage Preferences
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Two Sets of Piwi Proteins Are Involved in Distinct sRNA Pathways Leading to Elimination of Germline-Specific DNA
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A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing
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Uncoupling programmed DNA cleavage and repair scrambles the Paramecium somatic genome
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Small RNA-Mediated trans-Nuclear and trans-Element Communications in Tetrahymena DNA Elimination
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Functional Diversification of Dicer-like Proteins and Small RNAs Required for Genome Sculpting
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Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements
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Identification of a miniature Sae2/Ctp1/CtIP ortholog from Paramecium tetraurelia required for sexual reproduction and DNA double-strand break repair
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Insights into transgenerational epigenetics from studies of ciliates
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A comparative study of genome organization and epigenetic mechanisms in model ciliates, with an emphasis on Tetrahymena , Paramecium and Oxytricha
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DAPI staining and DNA content estimation of nuclei in uncultivable microbial eukaryotes (Arcellinida and Ciliates)
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Transcriptional reprogramming and epigenetic regulation in Paramecium caudatum: a new model for studying extreme germline DNA elimination
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Roles of Noncoding RNAs in Ciliate Genome Architecture
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Small-RNA-Mediated Genome-wide trans -Recognition Network in Tetrahymena DNA Elimination
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Coupling DNA Damage and Repair: an Essential Safeguard during Programmed DNA Double-Strand Breaks?
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Necessity Is the Mother of Invention: Ciliates, Transposons, and Transgenerational Inheritance
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Transposable Element Domestication As an Adaptation to Evolutionary Conflicts
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When cleaning facilitates cluttering – genome editing in ciliates
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Genome-defence small RNAs exapted for epigenetic mating-type inheritance
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The Polycomb protein Ezl1 mediates H3K9 and H3K27 methylation to repress transposable elements in Paramecium
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The mechanistic and evolutionary diversity of programmed DNA elimination
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Host-transposable element coexistence: a matter of resistance, tolerance and trade-off
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Heterochromatin-dependent transcription links the PRC2 complex to small RNA-mediated DNA elimination
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Functions and mechanisms of eukaryotic RNA-guided programmed DNA elimination
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Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma
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MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma
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How ciliates got their nuclei
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Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus
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BleTIES: annotation of natural genome editing in ciliates using long read sequencing
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ParTIES: a toolbox for Paramecium interspersed DNA elimination studies
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Golgi_traff phylogeny reveals ancient eukaryotic genes with recent surprises: replication and diversification of HID1 domain-containing protein unique to Schizosaccharomyces
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SIGAR: Inferring Features of Genome Architecture and DNA Rearrangements by Split-Read Mapping
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Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species
inferred← citeshttps://doi.org/10.1093/gbe/evab263openalex-snapshot
One Cell, Two Gears: Extensive Somatic Genome Plasticity Accompanies High Germline Genome Stability in Paramecium
inferred← citeshttps://doi.org/10.1093/gbe/evt087openalex-snapshot
Spliced DNA Sequences in the Paramecium Germline: Their Properties and Evolutionary Potential
inferred← citeshttps://doi.org/10.1093/gbe/evy055openalex-snapshot
Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina
inferred← citeshttps://doi.org/10.1093/gbe/evy133openalex-snapshot
Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell ‘Omics
inferred← citeshttps://doi.org/10.1093/molbev/msad107openalex-snapshot
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium Complex
inferred← citeshttps://doi.org/10.1093/molbev/msx074openalex-snapshot
Population Genomics of Paramecium Species
inferred← citeshttps://doi.org/10.1093/nar/gkaa472openalex-snapshot
A universal method for the rapid isolation of all known classes of functional silencing small RNAs
inferred← citeshttps://doi.org/10.1093/nar/gkac106openalex-snapshot
The transient Spt4-Spt5 complex as an upstream regulator of non-coding RNAs during development
inferred← citeshttps://doi.org/10.1093/nar/gkad1006openalex-snapshot
Inter-generational nuclear crosstalk links the control of gene expression to programmed genome rearrangement during the Paramecium sexual cycle
inferred← citeshttps://doi.org/10.1093/nar/gkae1055openalex-snapshot
The PIWI-interacting protein Gtsf1 controls the selective degradation of small RNAs in Paramecium
inferred← citeshttps://doi.org/10.1093/nar/gkae925openalex-snapshot
GTSF1 is required for transposon silencing in the unicellular eukaryote Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1093/nar/gkaf1048openalex-snapshot
A histone methyltransferase-independent function of PRC2 controls small RNA dynamics during programmed DNA elimination in Paramecium
inferred← citeshttps://doi.org/10.1093/nar/gkaf286openalex-snapshot
The linker region of a development-specific DNA polymerase X ensures efficient repair of programmed DNA double-strand breaks in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1093/nar/gkaf577openalex-snapshot
Relaxed DNA substrate specificity of transposases involved in programmed genome rearrangement
inferred← citeshttps://doi.org/10.1093/nar/gku1331openalex-snapshot
Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1093/nar/gku223openalex-snapshot
A forward genetic screen reveals essential and non-essential RNAi factors in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1093/nar/gku619openalex-snapshot
Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion
inferred← citeshttps://doi.org/10.1093/nar/gku874openalex-snapshot
Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination
inferred← citeshttps://doi.org/10.1093/nar/gkv1110openalex-snapshot
DNA deletion as a mechanism for developmentally programmed centromere loss
inferred← citeshttps://doi.org/10.1093/nar/gkv843openalex-snapshot
Cis-acting signals modulate the efficiency of programmed DNA elimination inParamecium tetraurelia
inferred← citeshttps://doi.org/10.1093/nar/gkw1318openalex-snapshot
A meiosis-specific Spt5 homolog involved in non-coding transcription
inferred← citeshttps://doi.org/10.1093/nar/gkw1359openalex-snapshot
Multimerization properties of PiggyMac, a domesticatedpiggyBactransposase involved in programmed genome rearrangements
inferred← citeshttps://doi.org/10.1093/nar/gkx652openalex-snapshot
A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement
inferred← citeshttps://doi.org/10.1093/nar/gky772openalex-snapshot
A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium
inferred← citeshttps://doi.org/10.1093/nar/gkz725openalex-snapshot
Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA
inferred← citeshttps://doi.org/10.1093/nar/gkz948openalex-snapshot
ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology
inferred← citeshttps://doi.org/10.1098/rsob.170172openalex-snapshot
Whats, hows and whys of programmed DNA elimination inTetrahymena
inferred← citeshttps://doi.org/10.1101/2020.04.07.030270openalex-snapshot
Prolonged exposure to constant environmental conditions prompts nonrandom genetic variation
inferred← citeshttps://doi.org/10.1101/2021.08.12.456067openalex-snapshot
Paramecium Polycomb Repressive Complex 2 physically interacts with the small RNA binding PIWI protein to repress transposable elements
inferred← citeshttps://doi.org/10.1101/2021.12.14.471607openalex-snapshot
Genome editing excisase origins illuminated by somatic genome of Blepharisma
inferred← citeshttps://doi.org/10.1101/2022.05.02.489906openalex-snapshot
MITE infestation of germline accommodated by genome editing in Blepharisma
inferred← citeshttps://doi.org/10.1101/2023.10.06.561219openalex-snapshot
Conservation of the ancestral function of GTSF1 in transposon silencing in the unicellular eukaryote Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1101/2024.01.23.576875openalex-snapshot
Two paralogous PHD finger proteins participate in Paramecium tetraurelia ’s natural genome editing
inferred← citeshttps://doi.org/10.1101/2024.07.18.604053openalex-snapshot
A development-specific POLX essential for programmed genome rearrangement in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1101/2024.07.26.605286openalex-snapshot
Mechanisms Ensuring Fidelity of Family X DNA Polymerases in Programmed DNA rearrangements in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1101/2024.08.09.607295openalex-snapshot
De novo genome sequence assembly of the RNAi-tractable endosymbiosis model system Paramecium bursaria 186b reveals factors shaping intron repertoire
inferred← citeshttps://doi.org/10.1101/2025.08.21.671558openalex-snapshot
Somatic Programmed DNA Elimination is widespread in free-living Rhabditidae nematodes
inferred← citeshttps://doi.org/10.1101/448316openalex-snapshot
Enhanced plasticity of programmed DNA elimination boosts adaptive potential in suboptimal environments
inferred← citeshttps://doi.org/10.1101/gad.320796.118openalex-snapshot
RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena
inferred← citeshttps://doi.org/10.1101/gr.245332.118openalex-snapshot
Environmentally induced plasticity of programmed DNA elimination boosts somatic variability in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1101/gr.276125.121openalex-snapshot
GC content, but not nucleosome positioning, directly contributes to intron splicing efficiency in Paramecium
inferred← citeshttps://doi.org/10.1101/gr.276126.121openalex-snapshot
Broad domains of histone marks in the highly compact Paramecium macronuclear genome
inferred← citeshttps://doi.org/10.1101/gr.277027.122openalex-snapshot
Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics
inferred← citeshttps://doi.org/10.1101/gr.278402.123openalex-snapshot
ISWI1 complex proteins facilitate developmental genome editing in Paramecium
inferred← citeshttps://doi.org/10.1111/jeu.12891openalex-snapshot
Epigenetic influences of mobile genetic elements on ciliate genome architecture and evolution
inferred← citeshttps://doi.org/10.1111/jeu.12898openalex-snapshot
Macronuclear development in ciliates, with a focus on nuclear architecture
inferred← citeshttps://doi.org/10.1111/jeu.12914openalex-snapshot
Paramecium epigenetics in development and proliferation
inferred← citeshttps://doi.org/10.1111/jeu.12926openalex-snapshot
Ciliate research: From myth to trendsetting science
inferred← citeshttps://doi.org/10.1111/nyas.12636openalex-snapshot
The eukaryotic way to defend and edit genomes by sRNA‐targeted DNA deletion
inferred← citeshttps://doi.org/10.1111/nyas.14108openalex-snapshot
Evolutionary origins and impacts of genome architecture in ciliates
inferred← citeshttps://doi.org/10.1126/sciadv.adx3690openalex-snapshot
Soma-derived 30-nt small RNAs are coupled with chromosome breakage and precisely target nontransposon DNA against elimination in Euplotes vannus
inferred← citeshttps://doi.org/10.1128/9781555819217.ch17openalex-snapshot
Programmed Rearrangement in Ciliates: Paramecium
inferred← citeshttps://doi.org/10.1128/9781555819217.ch18openalex-snapshot
Programmed Genome Rearrangements in the Ciliate Oxytricha
inferred← citeshttps://doi.org/10.1128/9781555819217.ch34openalex-snapshot
Mariner and the ITm Superfamily of Transposons
inferred← citeshttps://doi.org/10.1128/mbio.01328-14openalex-snapshot
Genomic Characterization of Variable Surface Antigens Reveals a Telomere Position Effect as a Prerequisite for RNA Interference-Mediated Silencing in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1128/mbio.01836-17openalex-snapshot
Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics)
inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0025-2014openalex-snapshot
Programmed Genome Rearrangements in the CiliateOxytricha
inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0033-2014openalex-snapshot
Mariner and the ITm Superfamily of Transposons
inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0035-2014openalex-snapshot
Programmed Rearrangement in Ciliates: Paramecium
inferred← citeshttps://doi.org/10.1128/mmbr.00184-22openalex-snapshot
Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends
inferred← citeshttps://doi.org/10.1146/annurev-genet-071819-104035openalex-snapshot
Paramecium Genetics, Genomics, and Evolution
inferred← citeshttps://doi.org/10.1146/annurev-micro-090816-093342openalex-snapshot
Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena
inferred← citeshttps://doi.org/10.1146/annurev-micro-102215-095448openalex-snapshot
Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits
inferred← citeshttps://doi.org/10.1155/2012/436196openalex-snapshot
Transposon Invasion of theParameciumGermline Genome Countered by a Domesticated PiggyBac Transposase and the NHEJ Pathway
inferred← citeshttps://doi.org/10.1186/1471-2164-15-186openalex-snapshot
Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development
inferred← citeshttps://doi.org/10.1186/s12864-017-3713-7openalex-snapshot
Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements
inferred← citeshttps://doi.org/10.1186/s12864-017-3887-zopenalex-snapshot
Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression
inferred← citeshttps://doi.org/10.1186/s12915-020-00912-2openalex-snapshot
Genome plasticity in Paramecium bursaria revealed by population genomics
inferred← citeshttps://doi.org/10.1186/s13059-026-04045-7openalex-snapshot
A H3K27me3 reader complex couples H3K27me3 accumulation to nascent transcription of transposable elements in Paramecium
inferred← citeshttps://doi.org/10.1186/s13100-016-0057-9openalex-snapshot
Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha
inferred← citeshttps://doi.org/10.1186/s13100-021-00240-4openalex-snapshot
The unusual structure of the PiggyMac cysteine-rich domain reveals zinc finger diversity in PiggyBac-related transposases
inferred← citeshttps://doi.org/10.1242/jcs.261979openalex-snapshot
Two paralogous PHD finger proteins participate in natural genome editing in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1261/rna.079134.122openalex-snapshot
Identification of novel, functional, long noncoding RNAs involved in programmed, large-scale genome rearrangements
inferred← citeshttps://doi.org/10.12688/f1000research.12121.1openalex-snapshot
Identification and analysis of functional associations among natural eukaryotic genome editing components
inferred← citeshttps://doi.org/10.1371/journal.pbio.1001473openalex-snapshot
The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001309openalex-snapshot
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001559openalex-snapshot
Gene-rich germline-restricted chromosomes in black-winged fungus gnats evolved through hybridization
inferred← citeshttps://doi.org/10.1371/journal.pgen.1003659openalex-snapshot
Transposon Domestication versus Mutualism in Ciliate Genome Rearrangements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004032openalex-snapshot
A Domesticated PiggyBac Transposase Interacts with Heterochromatin and Catalyzes Reproducible DNA Elimination in Tetrahymena
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004086openalex-snapshot
Is Non-Homologous End-Joining Really an Inherently Error-Prone Process?
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004552openalex-snapshot
Ku-Mediated Coupling of DNA Cleavage and Repair during Programmed Genome Rearrangements in the Ciliate Paramecium tetraurelia
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004665openalex-snapshot
Local Effect of Enhancer of Zeste-Like Reveals Cooperation of Epigenetic and cis-Acting Determinants for Zygotic Genome Rearrangements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005383openalex-snapshot
TFIIS-Dependent Non-coding Transcription Regulates Developmental Genome Rearrangements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005842openalex-snapshot
A Parallel G Quadruplex-Binding Protein Regulates the Boundaries of DNA Elimination Events of Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008723openalex-snapshot
Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008949openalex-snapshot
The Paramecium histone chaperone Spt16-1 is required for Pgm endonuclease function in programmed genome rearrangements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010913openalex-snapshot
Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids
inferred← citeshttps://doi.org/10.1371/journal.pone.0112899openalex-snapshot
Pdsg1 and Pdsg2, Novel Proteins Involved in Developmental Genome Remodelling in Paramecium
inferred← citeshttps://doi.org/10.1371/journal.pone.0161476openalex-snapshot
Evolution of the Exon-Intron Structure in Ciliate Genomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0206667openalex-snapshot
Determination of the presence of 5-methylcytosine in Paramecium tetraurelia
inferred← citeshttps://doi.org/10.15252/embj.2022111839openalex-snapshot
Chromatin remodeling is required for sRNA‐guided DNA elimination in Paramecium
inferred← citeshttps://doi.org/10.1534/genetics.114.163287openalex-snapshot
Insights into Three Whole-Genome Duplications Gleaned from theParamecium caudatumGenome Sequence
inferred← citeshttps://doi.org/10.17816/ecogen1645-22openalex-snapshot
RNA interference in formation of the somatic genome of ciliates Paramecium and Tetrahymena
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9235884/v1openalex-snapshot
N6-methyldeoxyadenosine is a transgenerational epigenetic mark protecting DNA from deletion
inferred← citeshttps://doi.org/10.26508/lsa.202302281openalex-snapshot
Structural maintenance of chromosomes (SMC) proteins are required for DNA elimination in Paramecium
inferred← citeshttps://doi.org/10.3389/fcell.2020.584219openalex-snapshot
Cross-Generational Effects and Non-random Developmental Response to Temperature Variation in Paramecium
inferred← citeshttps://doi.org/10.3390/biom11040550openalex-snapshot
The Role of RNA in DNA Breaks, Repair and Chromosomal Rearrangements
inferred← citeshttps://doi.org/10.3390/microorganisms10101901openalex-snapshot
Intronization Signatures in Coding Exons Reveal the Evolutionary Fluidity of Eukaryotic Gene Architecture
inferred← citeshttps://doi.org/10.3390/microorganisms11020418openalex-snapshot
The Conjusome—A Transient Organelle Linking Genome Rearrangements in the Parental and Developing Macronuclei
inferred← citeshttps://doi.org/10.3390/microorganisms11040937openalex-snapshot
A Review for the Special Issue on Paramecium as a Modern Model Organism
inferred← citeshttps://doi.org/10.3390/microorganisms9091979openalex-snapshot
Fifty Generations of Amitosis: Tracing Asymmetric Allele Segregation in Polyploid Cells with Single-Cell DNA Sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.13300174openalex-snapshot
Additional file 1 of Genome plasticity in Paramecium bursaria revealed by population genomics
inferred← citeshttps://doi.org/10.6084/m9.figshare.13300177openalex-snapshot
Additional file 2 of Genome plasticity in Paramecium bursaria revealed by population genomics
inferred← citeshttps://doi.org/10.64898/2026.02.13.705781openalex-snapshot
N6-methyldeoxyadenosine is a transgenerational epigenetic mark protecting DNA from deletion
inferred← citeshttps://doi.org/10.70675/13d9e13dz688ez408bza9d1zc1969e4eb7ccopenalex-snapshot
Ciblage & élimination des transposons et de leurs vestiges lors des réarrangements programmés du génome somatique de la paramécie
inferred← citeshttps://doi.org/10.70675/60e0aaadz31f3z4873z8fafz9d3e86686fccopenalex-snapshot
Spécialisation de Ku80c dans le couplage entre coupure et réparation de l’ADN lors des réarrangements programmés du génome chez Paramecium tetraurelia
inferred← citeshttps://doi.org/10.70675/cef4bacezab19z4a37za5e5z90809f6d6f7eopenalex-snapshot
Annotation des génomes de paramécies
inferred← citeshttps://doi.org/10.70675/eaa802d4zd1c0z4a58z9fbez158d83bd3398openalex-snapshot
Élimination programmée d'ADN chez Paramecium tetraurelia : caractérisation de protéines contrôlant la dynamique des petits ARN
inferred← citeshttps://doi.org/10.7554/elife.19090openalex-snapshot
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
inferred← citeshttps://doi.org/10.7554/elife.23447openalex-snapshot
One genome’s junk is another’s garbage
inferred← citeshttps://doi.org/10.7554/elife.37927openalex-snapshot
Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
inferred← citeshttps://doi.org/10.7554/elife.82979openalex-snapshot
Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes
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