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Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Reanalysis of Murphy et al.?s Data Gives Various Mammalian Phylogenies and Suggests Overcredibility of Bayesian Trees
inferredcites →https://doi.org/10.1007/s00357-005-0009-4openalex-snapshot
J. Felsenstein, Inferring Phylogenies, Sinauer Assoc., 2004, pp. xx + 664.
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Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters
inferredcites →https://doi.org/10.1016/0169-5347(92)90244-6openalex-snapshot
Progress with methods for constructing evolutionary trees
inferredcites →https://doi.org/10.1016/j.ympev.2004.06.015openalex-snapshot
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
inferredcites →https://doi.org/10.1016/s0169-5347(00)02025-5openalex-snapshot
Phylogenetic systematics turns over a new leaf
inferredcites →https://doi.org/10.1038/nature02917openalex-snapshot
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
inferredcites →https://doi.org/10.1038/nrg1044openalex-snapshot
Phylogeny estimation: traditional and Bayesian approaches
inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot
Phylogenomics and the reconstruction of the tree of life
inferredcites →https://doi.org/10.1073/pnas.212646199openalex-snapshot
Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
inferredcites →https://doi.org/10.1080/10635150117959openalex-snapshot
Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods
inferredcites →https://doi.org/10.1080/106351501753328839openalex-snapshot
Maximum Likelihood Estimation of Phylogenetic Trees Is Consistent When Substitution Rates Vary According to the Invariable Sites plus Gamma Distribution
inferredcites →https://doi.org/10.1080/10635150290102366openalex-snapshot
Potential Applications and Pitfalls of Bayesian Inference of Phylogeny
inferredcites →https://doi.org/10.1080/10635150390218213openalex-snapshot
Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case
inferredcites →https://doi.org/10.1080/10635150390235485openalex-snapshot
Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics
inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
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The Importance of Proper Model Assumption in Bayesian Phylogenetics
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A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data
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Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models
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An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
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Polytomies and Bayesian Phylogenetic Inference
inferredcites →https://doi.org/10.1080/10635150590945313openalex-snapshot
Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny
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Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative
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On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree
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MrBayes 3: Bayesian phylogenetic inference under mixed models
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Bayes or Bootstrap? A Simulation Study Comparing the Performance of Bayesian Markov Chain Monte Carlo Sampling and Bootstrapping in Assessing Phylogenetic Confidence
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How Meaningful Are Bayesian Support Values?
inferredcites →https://doi.org/10.1093/molbev/msh130openalex-snapshot
Covarion Shifts Cause a Long-Branch Attraction Artifact That Unites Microsporidia and Archaebacteria in EF-1α Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msh156openalex-snapshot
An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data
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Likelihood, Parsimony, and Heterogeneous Evolution
inferredcites →https://doi.org/10.1093/molbev/msm141openalex-snapshot
Effects of Branch Length Uncertainty on Bayesian Posterior Probabilities for Phylogenetic Hypotheses
inferredcites →https://doi.org/10.1093/molbev/msn042openalex-snapshot
A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy
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Bayesian Inference in molecular Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003973openalex-snapshot
Heterotachy, an Important Process of Protein Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025811openalex-snapshot
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026137openalex-snapshot
Topological bias and inconsistency of maximum likelihood using wrong models
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040126openalex-snapshot
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot
Cases in which Parsimony or Compatibility Methods will be Positively Misleading
inferredcites →https://doi.org/10.1093/sysbio/42.2.182openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/42.3.247openalex-snapshot
Success of Phylogenetic Methods in the Four-Taxon Case
inferredcites →https://doi.org/10.1093/sysbio/44.1.17openalex-snapshot
Performance of Phylogenetic Methods in Simulation
inferredcites →https://doi.org/10.1093/sysbio/46.2.354openalex-snapshot
On the Consistency of Maximum Likelihood Estimation of Phylogenetic Trees from Nucleotide Sequences
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot
A review of long‐branch attraction
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The Closest Living Relatives of Land Plants
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Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
inferredcites →https://doi.org/10.1126/science.1067179openalex-snapshot
Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
inferredcites →https://doi.org/10.1126/science.1115493openalex-snapshot
Phylogenetic MCMC Algorithms Are Misleading on Mixtures of Trees
inferredcites →https://doi.org/10.1126/science.276.5310.218openalex-snapshot
Biology Recapitulates Phylogeny
inferredcites →https://doi.org/10.1146/annurev.ecolsys.37.091305.110021openalex-snapshot
The Posterior and the Prior in Bayesian Phylogenetics
inferredcites →https://doi.org/10.1198/tech.2001.s608openalex-snapshot
Bayes and Empirical Bayes Methods for Data Analysis
inferredcites →https://doi.org/10.2307/2412923openalex-snapshot
Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
inferredcites →https://doi.org/10.2307/2533126openalex-snapshot
Bayes and Empirical Bayes Methods for Data Analysis.
inferredcites →https://doi.org/10.2307/2992540openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
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