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First complete female mitochondrial genome in four bivalve species genus Donax and their phylogenetic relationships within the Veneroida order

https://doi.org/10.1371/journal.pone.0184464

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Biology and Population Dynamics of L. (Bivalvia: Donacidae) in the South Adriatic Coast (Italy)

inferredcites →https://doi.org/10.1006/mpev.1998.0530openalex-snapshot

Tandemly Repeated Sequences in the Mitochondrial DNA Control Region and Phylogeography of the Pike-PerchesStizostedion

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ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution

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Sandy Beaches as Ecosystems

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The Biology of the Genus Donax

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Observations on the biology of Donax trunculus and D. vittatus at Ile d'Ol�ron (French Atlantic coast)

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Identification of four Donax species by PCR–RFLP analysis of cytochrome c oxidase subunit I (COI)

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Complete Mitochondrial DNA Sequence of the Scallop Placopecten magellanicus: Evidence of Transposition Leading to an Uncharacteristically Large Mitochondrial Genome

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The Mitochondrial Genomes of Two Scallops, Argopecten irradians and Chlamys farreri (Mollusca: Bivalvia): The Most Highly Rearranged Gene Order in the Family Pectinidae

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Comparative Genomics of Marine Mussels (Mytilus spp.) Gender Associated mtDNA: Rapidly Evolving atp8

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The complete mitochondrial genome of the hard clam Meretrix meretrix

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The complete mitochondrial genome of the grand jackknife clam, Solen grandis (Bivalvia: Solenidae): a novel gene order and unusual non-coding region

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Characterization of nineteen microsatellite markers and development of multiplex PCRs for the wedge clam Donax trunculus (Mollusca: Bivalvia)

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Biparental Inheritance Through Uniparental Transmission: The Doubly Uniparental Inheritance (DUI) of Mitochondrial DNA

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Complete mitochondrial genome sequence of Japanese cockle Fulvia mutica (Cardiidae)

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Mitogenome evidence for the existence of cryptic species in Coelomactra antiquata

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Complete mtDNA of Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region

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Complete mitochondrial genome of Coelomactra antiquata (Mollusca: Bivalvia): The first representative from the family Mactridae with novel gene order and unusual tandem repeats

inferredcites →https://doi.org/10.1016/j.cbd.2014.08.002openalex-snapshot

Comparative mitogenomic analysis reveals cryptic species: A case study in Mactridae (Mollusca: Bivalvia)

inferredcites →https://doi.org/10.1016/j.ecss.2017.08.032openalex-snapshot

Genetic diversity and population genetic analysis of Donax vittatus (Mollusca: Bivalvia) and phylogeny of the genus with mitochondrial and nuclear markers

inferredcites →https://doi.org/10.1016/j.foodcont.2011.05.020openalex-snapshot

Identification of the wedge clam Donax trunculus by a simple PCR technique

inferredcites →https://doi.org/10.1016/j.gene.2009.07.009openalex-snapshot

Complete nucleotide sequence and gene organization of the mitochondrial genome of Paa spinosa (Anura: Ranoidae)

inferredcites →https://doi.org/10.1016/j.gene.2011.12.002openalex-snapshot

Comparative studies of the complete mitochondrial genomes of four Paphia clams and reconsideration of subgenus Neotapes (Bivalvia: Veneridae)

inferredcites →https://doi.org/10.1016/j.gene.2012.07.032openalex-snapshot

New features of Asian Crassostrea oyster mitochondrial genomes: A novel alloacceptor tRNA gene recruitment and two novel ORFs

inferredcites →https://doi.org/10.1016/j.gene.2013.09.077openalex-snapshot

Evolution of the tRNA gene family in mitochondrial genomes of five Meretrix clams (Bivalvia, Veneridae)

inferredcites →https://doi.org/10.1016/j.margen.2010.01.001openalex-snapshot

Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): Identification of the “missing” ATPase 8 gene

inferredcites →https://doi.org/10.1016/j.margen.2011.06.006openalex-snapshot

Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome

inferredcites →https://doi.org/10.1016/j.margen.2016.09.003openalex-snapshot

Updated mitochondrial phylogeny of Pteriomorph and Heterodont Bivalvia, including deep-sea chemosymbiotic Bathymodiolus mussels, vesicomyid clams and the thyasirid clam Conchocele cf. bisecta

inferredcites →https://doi.org/10.1016/j.tig.2007.05.011openalex-snapshot

The unusual system of doubly uniparental inheritance of mtDNA: isn’t one enough?

inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot

MITOS: Improved de novo metazoan mitochondrial genome annotation

inferredcites →https://doi.org/10.1016/j.ympev.2016.11.003openalex-snapshot

A family-level Tree of Life for bivalves based on a Sanger-sequencing approach

inferredcites →https://doi.org/10.1016/s0074-7696(08)62066-5openalex-snapshot

Animal Mitochondrial DNA: Structure and Evolution

inferredcites →https://doi.org/10.1016/s0165-7836(99)00017-xopenalex-snapshot

Growth and reproductive cycle of Donax trunculus L., (Mollusca: Bivalvia) off Faro, southern Portugal

inferredcites →https://doi.org/10.1016/s0169-5347(00)01967-4openalex-snapshot

Rare genomic changes as a tool for phylogenetics

inferredcites →https://doi.org/10.1016/s0959-437x(98)80035-xopenalex-snapshot

Big trees from little genomes: mitochondrial gene order as a phylogenetic tool

inferredcites →https://doi.org/10.1016/s1385-1101(01)00064-8openalex-snapshot

Sublethal foot-predation on Donacidae (Mollusca: Bivalvia)

inferredcites →https://doi.org/10.1017/s0025315402005167openalex-snapshot

Ecological characterization of dredged and non-dredged bivalve fishing areas off south Portugal

inferredcites →https://doi.org/10.1023/a:1021009031717openalex-snapshot

Shell morphometric relationships of the most common bivalve species (Mollusca: Bivalvia) of the Algarve coast (southern Portugal)

inferredcites →https://doi.org/10.1038/hdy.2008.62openalex-snapshot

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

inferredcites →https://doi.org/10.1038/srep39152openalex-snapshot

Implications for management and conservation of the population genetic structure of the wedge clam Donax trunculus across two biogeographic boundaries

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A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1080/19401730902964425openalex-snapshot

The complete mitochondrial genome of the clamMeretrix petechialis(Mollusca: Bivalvia: Veneridae)

inferredcites →https://doi.org/10.1080/23802359.2016.1149786openalex-snapshot

The complete mitochondrial genome of Cyclina sinensis (Veneroida:Veneridae)

inferredcites →https://doi.org/10.1080/23802359.2016.1197064openalex-snapshot

The first representative of Coelomactra antiquata mitochondrial genome from Liaoning (China) and phylogenetic consideration

inferredcites →https://doi.org/10.1089/dna.2008.0807openalex-snapshot

Doubly Uniparental Inheritance: Two Mitochondrial Genomes, One Precious Model for Organelle DNA Inheritance and Evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btm573openalex-snapshot

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inferredcites →https://doi.org/10.1093/bioinformatics/btm598openalex-snapshot

GenomeVx: simple web-based creation of editable circular chromosome maps

inferredcites →https://doi.org/10.1093/bioinformatics/btr088openalex-snapshot

ProtTest 3: fast selection of best-fit models of protein evolution

inferredcites →https://doi.org/10.1093/gbe/evw187openalex-snapshot

Comparative Large-Scale Mitogenomics Evidences Clade-Specific Evolutionary Trends in Mitochondrial DNAs of Bivalvia

inferredcites →https://doi.org/10.1093/genetics/131.2.397openalex-snapshot

A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.

inferredcites →https://doi.org/10.1093/genetics/138.2.423openalex-snapshot

Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata.

inferredcites →https://doi.org/10.1093/genetics/148.1.341openalex-snapshot

The Fate of Paternal Mitochondrial DNA in Developing Female Mussels, Mytilus edulis: Implications for the Mechanism of Doubly Uniparental Inheritance of Mitochondrial DNA

inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot

A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

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inferredcites →https://doi.org/10.1093/nar/27.8.1767openalex-snapshot

Animal mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkt371openalex-snapshot

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

inferredcites →https://doi.org/10.1093/nar/gkw413openalex-snapshot

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a022948openalex-snapshot

Tandem Repeats and Heteroplasmy in the Mitochondrial DNA Control Region of the Loggerhead Shrike (Lanius ludovicianus)

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040252openalex-snapshot

Male and female mitochondrial DNA lineages in the blue mussel (Mytilus edulis) species group.

inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

inferredcites →https://doi.org/10.1101/gr.194201openalex-snapshot

SSAHA: A Fast Search Method for Large DNA Databases

inferredcites →https://doi.org/10.1111/j.1463-6409.2007.00299.xopenalex-snapshot

A molecular phylogeny of heterodont bivalves (Mollusca: Bivalvia: Heterodonta): new analyses of 18S and 28S rRNA genes

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00329.xopenalex-snapshot

DOUBLY UNIPARENTAL INHERITANCE (DUI) OF MITOCHONDRIAL DNA INDONAX TRUNCULUS(BIVALVIA: DONACIDAE) AND THE PROBLEM OF ITS SPORADIC DETECTION IN BIVALVIA

inferredcites →https://doi.org/10.1139/g10-096openalex-snapshot

The mitogenome of Paphia euglypta (Bivalvia: Veneridae) and comparative mitogenomic analyses of three venerids

inferredcites →https://doi.org/10.1186/1471-2164-10-136openalex-snapshot

A close phylogenetic relationship between Sipuncula and Annelida evidenced from the complete mitochondrial genome sequence of Phascolosoma esculenta

inferredcites →https://doi.org/10.1186/1471-2164-14-409openalex-snapshot

The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

inferredcites →https://doi.org/10.1186/1742-9994-3-13openalex-snapshot

The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica – and the first record for a putative Atpase subunit 8 gene in marine bivalves

inferredcites →https://doi.org/10.1186/s12862-014-0259-zopenalex-snapshot

Mitochondrial genomes of the Baltic clam Macoma balthica(Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities

inferredcites →https://doi.org/10.1371/journal.pone.0032353openalex-snapshot

The Complete Mitochondrial Genomes of Six Heterodont Bivalves (Tellinoidea and Solenoidea): Variable Gene Arrangements and Phylogenetic Implications

inferredcites →https://doi.org/10.1371/journal.pone.0082857openalex-snapshot

The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation

inferredcites →https://doi.org/10.1371/journal.pone.0153631openalex-snapshot

The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii

inferredcites →https://doi.org/10.1534/genetics.105.046243openalex-snapshot

Replication Origin of Mitochondrial DNA in Insects

inferredcites →https://doi.org/10.1534/genetics.109.110700openalex-snapshot

Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

inferredcites →https://doi.org/10.1590/s1415-47572000000400008openalex-snapshot

Mitochondrial genome organization and vertebrate phylogenetics

inferredcites →https://doi.org/10.3109/19401736.2011.653802openalex-snapshot

The complete mitochondrial genome ofSolen strictus(Bivalvia: Solenidae)

inferredcites →https://doi.org/10.3109/19401736.2014.892104openalex-snapshot

The complete mitogenome of the marine bivalve Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae)

inferredcites →https://doi.org/10.3109/19401736.2015.1007355openalex-snapshot

The complete mitogenome of the giant clam Tridacna squamosa (Heterodonta: Bivalvia: Tridacnidae)

inferredcites →https://doi.org/10.3109/19401736.2015.1066348openalex-snapshot

Complete sequence and polymorphisms of female Ruditapes philippinarum (Mollusca: Bivalvia) mitochondria genome

inferredcites →https://doi.org/10.3109/19401736.2015.1079838openalex-snapshot

The complete mitochondrial genome of Saxidomus purpuratus (Veneroida: Veneridae)

inferredcites →https://doi.org/10.3109/19401736.2015.1089488openalex-snapshot

Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica

inferredcites →https://doi.org/10.3989/scimar.2010.74n1163openalex-snapshot

Ecology of megabenthic bivalve communities from sandy beaches on the south coast of Portugal

inferredcites →https://doi.org/10.7717/peerj.2760openalex-snapshot

Pursuing the quest for better understanding the taxonomic distribution of the system of doubly uniparental inheritance of mtDNA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Identification and Distribution of Wedge Clams (Donacidae: Bivalvia) in Thailand by Geometric Morphometric and Molecular Analysis.

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Fifteen novel microsatellite loci, developed using next-generation sequencing, reveal the lack of genetic structure in Donax vittatus from Iberian Peninsula

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Characterization of the mitochondrial genomes of three species in the ectomycorrhizal genus Cantharellus and phylogeny of Agaricomycetes

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inferred← citeshttps://doi.org/10.1038/s41598-024-63764-8openalex-snapshot

The absence of canonical respiratory complex I subunits in male-type mitogenomes of three Donax species

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Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies

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inferred← citeshttps://doi.org/10.12688/f1000research.21490.1openalex-snapshot

Recent advances in understanding mitochondrial genome diversity

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