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Mobile Introns Shape the Genetic Diversity of Their Host Genes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi0123s44openalex-snapshot
mtDNA Variation and Analysis Using Mitomap and Mitomaster
inferredcites →https://doi.org/10.1002/j.1460-2075.1994.tb06823.xopenalex-snapshot
Homing of a group II intron in yeast mitochondrial DNA is accompanied by unidirectional co‐conversion of upstream‐located markers.
inferredcites →https://doi.org/10.1002/jcp.25053openalex-snapshot
Error‐Prone Repair of DNA Double‐Strand Breaks
inferredcites →https://doi.org/10.1007/bf00330957openalex-snapshot
Mitochondrial introns aI1 and/or aI2 are needed for the in vivo deletion of intervening sequences
inferredcites →https://doi.org/10.1007/bf00405755openalex-snapshot
Distribution of mitochondrial introns in the species Schizosaccharomyces pombe and the origin of the group II intron in the gene encoding apocytochrome b
inferredcites →https://doi.org/10.1016/0092-8674(83)90457-9openalex-snapshot
Two intron sequences in yeast mitochondrial COX1 gene: Homology among URF-containing introns and strain-dependent variation in flanking exons
inferredcites →https://doi.org/10.1016/0092-8674(85)90348-4openalex-snapshot
Nonreciprocal exchange between alleles of the yeast mitochondrial 21S rRNA gene: Kinetics and the involvement of a double-strand break
inferredcites →https://doi.org/10.1016/0092-8674(89)90245-6openalex-snapshot
A latent intron-encoded maturase is also an endonuclease needed for intron mobility
inferredcites →https://doi.org/10.1016/j.mito.2007.09.005openalex-snapshot
Cis- and trans-splicing of group II introns in plant mitochondria
inferredcites →https://doi.org/10.1016/j.molcel.2016.06.037openalex-snapshot
DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks
inferredcites →https://doi.org/10.1016/s0014-5793(98)01467-7openalex-snapshot
The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1016/s0092-8674(85)80011-8openalex-snapshot
An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene
inferredcites →https://doi.org/10.1038/nature14183openalex-snapshot
Lagging-strand replication shapes the mutational landscape of the genome
inferredcites →https://doi.org/10.1038/nature16526openalex-snapshot
High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects
inferredcites →https://doi.org/10.1038/nature17661openalex-snapshot
Nucleotide excision repair is impaired by binding of transcription factors to DNA
inferredcites →https://doi.org/10.1038/ng.3215openalex-snapshot
The genomic and phenotypic diversity of Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1038/ng.911openalex-snapshot
Whole-genome sequencing of multiple Arabidopsis thaliana populations
inferredcites →https://doi.org/10.1073/pnas.1102343108openalex-snapshot
Selfish genetic elements, genetic conflict, and evolutionary innovation
inferredcites →https://doi.org/10.1073/pnas.1112808108openalex-snapshot
Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents
inferredcites →https://doi.org/10.1073/pnas.95.24.14244openalex-snapshot
Explosive invasion of plant mitochondria by a group I intron
inferredcites →https://doi.org/10.1073/pnas.96.24.13880openalex-snapshot
Recurrent invasion and extinction of a selfish gene
inferredcites →https://doi.org/10.1093/genetics/163.3.843openalex-snapshot
Ku-Dependent and Ku-Independent End-Joining Pathways Lead to Chromosomal Rearrangements During Double-Strand Break Repair in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/molbev/msr192openalex-snapshot
The Role of Reverse Transcriptase in Intron Gain and Loss Mechanisms
inferredcites →https://doi.org/10.1093/nar/18.19.5659openalex-snapshot
In vivoandin vitroanalyses of an intron-encoded DNA endonuclease from yeast mitochondria. Recognition site by site-directed mutagenesis
inferredcites →https://doi.org/10.1093/nar/20.15.4069openalex-snapshot
Intron 5α of the COXI gene of yeast mitochondrial DNA is a mobile group I intron
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkm766openalex-snapshot
GISSD: Group I Intron Sequence and Structure Database
inferredcites →https://doi.org/10.1093/nar/gkp874openalex-snapshot
REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004077openalex-snapshot
Adaptation for Horizontal Transfer in a Homing Endonuclease
inferredcites →https://doi.org/10.1101/gad.10.17.2158openalex-snapshot
Exon coconversion biases accompanying intron homing: battle of the nucleases.
inferredcites →https://doi.org/10.1101/gr.074674.107openalex-snapshot
Relaxation of yeast mitochondrial functions after whole-genome duplication
inferredcites →https://doi.org/10.1101/gr.162339.113openalex-snapshot
Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
inferredcites →https://doi.org/10.1101/gr.185538.114openalex-snapshot
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
inferredcites →https://doi.org/10.1126/science.1191125openalex-snapshot
Increased Mutagenesis and Unique Mutation Signature Associated with Mitotic Gene Conversion
inferredcites →https://doi.org/10.1126/science.1231143openalex-snapshot
Multiplex Genome Engineering Using CRISPR/Cas Systems
inferredcites →https://doi.org/10.1126/science.1232033openalex-snapshot
RNA-Guided Human Genome Engineering via Cas9
inferredcites →https://doi.org/10.1128/mcb.12.4.1903openalex-snapshot
Complex recognition site for the group I intron-encoded endonuclease I-SceII.:
inferredcites →https://doi.org/10.1128/mcb.12.4.1903-.1992openalex-snapshot
Complex Recognition Site for the Group I Intron-Encoded Endonuclease I-SceII
inferredcites →https://doi.org/10.1146/annurev.bi.62.070193.003103openalex-snapshot
INTRONS AS MOBILE GENETIC ELEMENTS
inferredcites →https://doi.org/10.1186/1471-2148-11-1openalex-snapshot
Phylogenomic reconstruction of lactic acid bacteria: an update
inferredcites →https://doi.org/10.1186/1471-2148-11-277openalex-snapshot
Multiple recent horizontal transfers of the cox1intron in Solanaceae and extended co-conversion of flanking exons
inferredcites →https://doi.org/10.1186/s12864-015-1480-xopenalex-snapshot
Identification and characterization of rye genes not expressed in allohexaploid triticale
inferredcites →https://doi.org/10.1186/s12864-015-1664-4openalex-snapshot
Population structure of mitochondrial genomes in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1371/journal.pgen.1006207openalex-snapshot
Mutational Biases Drive Elevated Rates of Substitution at Regulatory Sites across Cancer Types
inferredcites →https://doi.org/10.1371/journal.pone.0047834openalex-snapshot
Comparative Mitochondrial Genomics within and among Yeast Species of the Lachancea Genus
inferredcites →https://doi.org/10.1534/g3.112.003152openalex-snapshot
Mitochondrial Genome Evolution in a Single Protoploid Yeast Species
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Evolutionary insights into Cordyceps militaris from mitogenome dynamics and genome-wide variation
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A new dollar spot disease of turfgrass caused by Clarireedia paspali
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Organic evolution: principles
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The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications
inferred← citeshttps://doi.org/10.1016/j.sjbs.2023.103605openalex-snapshot
Functional annotation and comparative analysis of four Botrytis cinerea mitogenomes reported from Punjab, Pakistan
inferred← citeshttps://doi.org/10.1038/s41598-020-70611-zopenalex-snapshot
First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure
inferred← citeshttps://doi.org/10.1038/s41598-021-82040-7openalex-snapshot
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
inferred← citeshttps://doi.org/10.1038/s41598-021-92125-yopenalex-snapshot
Mitochondrial DNA duplication, recombination, and introgression during interspecific hybridization
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The intron landscape of the mtDNA cytb gene among the Ascomycota: introns and intron-encoded open reading frames
inferred← citeshttps://doi.org/10.1111/1462-2920.14783openalex-snapshot
Mitochondrial‐encoded endonucleases drive recombination of protein‐coding genes in yeast
inferred← citeshttps://doi.org/10.1111/1462-2920.15608openalex-snapshot
Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in Botryosphaeria dothidea and B . kuwatsukai
inferred← citeshttps://doi.org/10.1128/mbio.02758-24openalex-snapshot
Frequent genetic exchanges revealed by a pan-mitogenome graph of a fungal plant pathogen
inferred← citeshttps://doi.org/10.1186/s12864-023-09689-4openalex-snapshot
Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.1186/s12864-026-12739-2openalex-snapshot
Complete mitochondrial genome of Laetiporus ailaoshanensis (Laetiporaceae, Basidiomycota): features, evolution, and phylogeny
inferred← citeshttps://doi.org/10.1186/s12915-020-00786-4openalex-snapshot
Discordant evolution of mitochondrial and nuclear yeast genomes at population level
inferred← citeshttps://doi.org/10.1186/s43008-020-00038-8openalex-snapshot
Comparative mitogenome analysis of two ectomycorrhizal fungi (Paxillus) reveals gene rearrangement, intron dynamics, and phylogeny of basidiomycetes
inferred← citeshttps://doi.org/10.1186/s43008-022-00094-2openalex-snapshot
First two mitochondrial genomes for the order Filobasidiales reveal novel gene rearrangements and intron dynamics of Tremellomycetes
inferred← citeshttps://doi.org/10.1186/s43008-024-00164-7openalex-snapshot
Comparative mitochondrial genomics of Thelebolaceae in Antarctica: insights into their extremophilic adaptations and evolutionary dynamics
inferred← citeshttps://doi.org/10.12688/f1000research.21490.1openalex-snapshot
Recent advances in understanding mitochondrial genome diversity
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009353openalex-snapshot
Fitness landscape of a dynamic RNA structure
inferred← citeshttps://doi.org/10.1371/journal.pone.0185545openalex-snapshot
The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements
inferred← citeshttps://doi.org/10.1534/genetics.118.301546openalex-snapshot
Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2023-0228openalex-snapshot
Group I introns: Structure, splicing and their applications in medical mycology
inferred← citeshttps://doi.org/10.3389/fgene.2021.785218openalex-snapshot
Mutational Effects of Mobile Introns on the Mitochondrial Genomes of Metschnikowia Yeasts
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00765openalex-snapshot
Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00978openalex-snapshot
Fungal Mitogenomes: Relevant Features to Planning Plant Disease Management
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Mitogenomes of Two Phallus Mushroom Species Reveal Gene Rearrangement, Intron Dynamics, and Basidiomycete Phylogeny
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The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales
inferred← citeshttps://doi.org/10.3389/fmicb.2021.656609openalex-snapshot
Recent and Ongoing Horizontal Transfer of Mitochondrial Introns Between Two Fungal Tree Pathogens
inferred← citeshttps://doi.org/10.3389/fmicb.2021.752094openalex-snapshot
Mitochondrial Genomics of Six Cacao Pathogens From the Basidiomycete Family Marasmiaceae
inferred← citeshttps://doi.org/10.3389/fmicb.2022.806575openalex-snapshot
From Genome Variation to Molecular Mechanisms: What we Have Learned From Yeast Mitochondrial Genomes?
inferred← citeshttps://doi.org/10.3389/fmicb.2022.897981openalex-snapshot
Editorial: Mitochondrial Genomes and Mitochondrion Related Gene Insights to Fungal Evolution
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The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1268944openalex-snapshot
Mitochondrial genome diversity across the subphylum Saccharomycotina
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1344877openalex-snapshot
Editorial: The significance of mitogenomics in mycology, volume II
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Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina
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Exploring Mitochondrial Heterogeneity and Evolutionary Dynamics in Thelephora ganbajun through Population Genomics
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Phylogenetic Relationships of Five Phallales Species Based on Mitochondrial Genome Analysis
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Mancha gris de la hoja del tomate: identificación, biología y genómica del agente etiológico
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Additional file 1 of Discordant evolution of mitochondrial and nuclear yeast genomes at population level
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624680openalex-snapshot
Additional file 1 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624683openalex-snapshot
Additional file 2 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624686openalex-snapshot
Additional file 3 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624689openalex-snapshot
Additional file 4 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624692openalex-snapshot
Additional file 5 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624698openalex-snapshot
Additional file 6 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624701openalex-snapshot
Additional file 7 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624704openalex-snapshot
Additional file 8 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.6084/m9.figshare.26624707openalex-snapshot
Additional file 9 of Systematic dissection of genomic features determining the vast diversity of conotoxins
inferred← citeshttps://doi.org/10.7554/elife.35330openalex-snapshot
Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing
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