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Exploring Mitochondrial Heterogeneity and Evolutionary Dynamics in Thelephora ganbajun through Population Genomics

https://doi.org/10.3390/ijms25169013
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.5056openalex-snapshot
Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria
inferredcites →https://doi.org/10.1002/ece3.6749openalex-snapshot
The insertion of a mitochondrial selfish element into the nuclear genome and its consequences
inferredcites →https://doi.org/10.1002/em.20050openalex-snapshot
Development of a quantitative PCR (TaqMan) assay for relative mitochondrial DNA copy number and the common mitochondrial DNA deletion in the rat
inferredcites →https://doi.org/10.1007/978-3-319-24277-4_9openalex-snapshot
Data Analysis
inferredcites →https://doi.org/10.1007/s00253-018-9350-5openalex-snapshot
Fungal mitochondrial genomes and genetic polymorphisms
inferredcites →https://doi.org/10.1007/s00253-021-11153-wopenalex-snapshot
Panorama of intron dynamics and gene rearrangements in the phylum Basidiomycota as revealed by the complete mitochondrial genome of Turbinellus floccosus
inferredcites →https://doi.org/10.1007/s12038-017-9723-4openalex-snapshot
What history tells us XLIV: The construction of the zinc finger nucleases
inferredcites →https://doi.org/10.1016/j.fbr.2015.02.001openalex-snapshot
Mitochondrial inheritance in basidiomycete fungi
inferredcites →https://doi.org/10.1016/j.fgb.2013.01.009openalex-snapshot
The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmid-related sequences
inferredcites →https://doi.org/10.1016/j.ijbiomac.2019.12.056openalex-snapshot
The mitochondrial genome of Morchella importuna (272.2 kb) is the largest among fungi and contains numerous introns, mitochondrial non-conserved open reading frames and repetitive sequences
inferredcites →https://doi.org/10.1016/j.ijbiomac.2021.01.087openalex-snapshot
The first eleven mitochondrial genomes from the ectomycorrhizal fungal genus (Boletus) reveal intron loss and gene rearrangement
inferredcites →https://doi.org/10.1016/j.mito.2021.02.002openalex-snapshot
Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames
inferredcites →https://doi.org/10.1038/nrmicro.2017.137openalex-snapshot
Functional horizontal gene transfer from bacteria to eukaryotes
inferredcites →https://doi.org/10.1038/s41586-018-0030-5openalex-snapshot
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
inferredcites →https://doi.org/10.1038/s41586-018-0859-7openalex-snapshot
Introns are mediators of cell response to starvation
inferredcites →https://doi.org/10.1038/s41598-017-01823-zopenalex-snapshot
Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun
inferredcites →https://doi.org/10.1038/s41598-017-07886-2openalex-snapshot
Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host
inferredcites →https://doi.org/10.1038/s41598-019-56918-6openalex-snapshot
Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages
inferredcites →https://doi.org/10.1038/s41598-020-70611-zopenalex-snapshot
First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure
inferredcites →https://doi.org/10.1038/srep40219openalex-snapshot
Comparative mitochondrial genomics toward exploring molecular markers in the medicinal fungus Cordyceps militaris
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1091/mbc.11.7.2349openalex-snapshot
Maintenance of Human Rearranged Mitochondrial DNAs in Long-Term Cultured Transmitochondrial Cell Lines
inferredcites →https://doi.org/10.1093/bioinformatics/bts460openalex-snapshot
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
inferredcites →https://doi.org/10.1093/femsle/fnab135openalex-snapshot
Intron distribution and emerging role of alternative splicing in fungi
inferredcites →https://doi.org/10.1093/gbe/evaa126openalex-snapshot
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)
inferredcites →https://doi.org/10.1093/mmy/myt001openalex-snapshot
Genomics in Coccidioides: Insights into evolution, ecology, and pathogenesis
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/27.23.4636openalex-snapshot
Improved microbial gene identification with GLIMMER
inferredcites →https://doi.org/10.1093/nar/gki081openalex-snapshot
Rfam: annotating non-coding RNAs in complete genomes
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1101/cshperspect.a011403openalex-snapshot
Mitochondrial Evolution
inferredcites →https://doi.org/10.1111/1462-2920.15792openalex-snapshot
Dynamic evolution of eukaryotic mitochondrial and nuclear genomes: a case study in the gourmet pine mushroom Tricholoma matsutake
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03665.xopenalex-snapshot
Recombination and genetic differentiation among natural populations of the ectomycorrhizal mushroom Tricholoma matsutake from southwestern China
inferredcites →https://doi.org/10.1111/j.1567-1364.2005.00018.xopenalex-snapshot
The mitochondrial genome of the wine yeastHanseniaspora uvarum: a unique genome organization among yeast/fungal counterparts
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02591.xopenalex-snapshot
Inferring weak population structure with the assistance of sample group information
inferredcites →https://doi.org/10.1139/g05-082openalex-snapshot
The inheritance of organelle genes and genomes: patterns and mechanisms
inferredcites →https://doi.org/10.1186/1759-8753-5-7openalex-snapshot
Homing endonucleases from mobile group I introns: discovery to genome engineering
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/preaccept-1056290013810591openalex-snapshot
MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes
inferredcites →https://doi.org/10.1186/s12862-015-0567-yopenalex-snapshot
Evaluation of the mechanisms of intron loss and gain in the social amoebae Dictyostelium
inferredcites →https://doi.org/10.1186/s12862-020-01685-6openalex-snapshot
Mitochondrial-nuclear coadaptation revealed through mtDNA replacements in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1186/s13100-022-00280-4openalex-snapshot
Mobile group I introns at nuclear rDNA position L2066 harbor sense and antisense homing endonuclease genes intervened by spliceosomal introns
inferredcites →https://doi.org/10.1186/s40709-017-0060-4openalex-snapshot
Evolution and inheritance of animal mitochondrial DNA: rules and exceptions
inferredcites →https://doi.org/10.1198/000313002533openalex-snapshot
Corrgrams
inferredcites →https://doi.org/10.1242/dmm.048912openalex-snapshot
Mitochondrial function in development and disease
inferredcites →https://doi.org/10.1371/journal.pone.0014048openalex-snapshot
The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns
inferredcites →https://doi.org/10.1371/journal.pone.0107536openalex-snapshot
The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications
inferredcites →https://doi.org/10.1371/journal.pone.0156104openalex-snapshot
Intron Derived Size Polymorphism in the Mitochondrial Genomes of Closely Related Chrysoporthe Species
inferredcites →https://doi.org/10.1371/journal.pone.0161476openalex-snapshot
Evolution of the Exon-Intron Structure in Ciliate Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0228166openalex-snapshot
Evaluation of mitochondrial DNA copy number estimation techniques
inferredcites →https://doi.org/10.1534/genetics.116.199059openalex-snapshot
Mobile Introns Shape the Genetic Diversity of Their Host Genes
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fgene.2021.534871openalex-snapshot
Comparative Mitogenomic Analysis Reveals Dynamics of Intron Within and Between Tricholoma Species and Phylogeny of Basidiomycota
inferredcites →https://doi.org/10.3389/fgene.2021.785218openalex-snapshot
Mutational Effects of Mobile Introns on the Mitochondrial Genomes of Metschnikowia Yeasts
inferredcites →https://doi.org/10.3389/fmicb.2017.01422openalex-snapshot
SMRT Sequencing Revealed Mitogenome Characteristics and Mitogenome-Wide DNA Modification Pattern in Ophiocordyceps sinensis
inferredcites →https://doi.org/10.3389/fmicb.2020.00617openalex-snapshot
Comparative Analyses of Mitochondrial Genomes Provide Evolutionary Insights Into Nematode-Trapping Fungi
inferredcites →https://doi.org/10.3389/fmicb.2020.00765openalex-snapshot
Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
inferredcites →https://doi.org/10.3389/fmicb.2021.647989openalex-snapshot
Pan-Mitogenomics Approach Discovers Diversity and Dynamism in the Prominent Brown Rot Fungal Pathogens
inferredcites →https://doi.org/10.3389/fmicb.2021.656609openalex-snapshot
Recent and Ongoing Horizontal Transfer of Mitochondrial Introns Between Two Fungal Tree Pathogens
inferredcites →https://doi.org/10.3389/fmicb.2021.699598openalex-snapshot
Evidence for Persistent Heteroplasmy and Ancient Recombination in the Mitochondrial Genomes of the Edible Yellow Chanterelles From Southwestern China and Europe
inferredcites →https://doi.org/10.3389/fmicb.2023.1159811openalex-snapshot
Multiple rearrangements and low inter- and intra-species mitogenome sequence variation in the Heterobasidion annosum s.l. species complex
inferredcites →https://doi.org/10.3390/cimb45050283openalex-snapshot
Mitochondria Have Made a Long Evolutionary Path from Ancient Bacteria Immigrants within Eukaryotic Cells to Essential Cellular Hosts and Key Players in Human Health and Disease
inferredcites →https://doi.org/10.3390/genes13050854openalex-snapshot
Genetic Differentiation and Widespread Mitochondrial Heteroplasmy among Geographic Populations of the Gourmet Mushroom Thelephora ganbajun from Yunnan, China
inferredcites →https://doi.org/10.3390/genes13112129openalex-snapshot
HEHR: Homing Endonuclease-Mediated Homologous Recombination for Efficient Adenovirus Genome Engineering

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.17.184941zenodo-depositor-declared
Insights into intraspecific variation and genotyping of Ganoderma lingzhi through pan-mitogenome analysis
inferred← citeshttps://doi.org/10.3897/imafungus.17.195879zenodo-depositor-declared
Evolutionary insights into Cordyceps militaris from mitogenome dynamics and genome-wide variation
inferred← citeshttps://doi.org/10.1080/23802359.2026.2654106openalex-snapshot
Characterization and phylogenetic analysis of the complete mitochondrial genome of Catathelasma laorentou Z.W. Ge et al. 2020
inferred← citeshttps://doi.org/10.1080/23802359.2026.2728263openalex-snapshot
Mitochondrial genome characteristics and phylogenetic analysis of Ramaria longispora
inferred← citeshttps://doi.org/10.12688/f1000research.177569.1openalex-snapshot
The complete and annotated mitochondrial genome of Hemileia vastatrix Race I, causal agent of coffee leaf rust
inferred← citeshttps://doi.org/10.3390/biology14111548openalex-snapshot
Pan-Mitogenome Construction, Intraspecific Variation, and Adaptive Evolution of the Plant Pathogenic Fungus Claviceps purpurea
inferred← citeshttps://doi.org/10.3390/ijms26178553openalex-snapshot
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