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The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Introns, Mobile Elements, and Plasmids
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Complete mitogenome of the entomopathogenic fungus Sporothrix insectorum RCEF 264 and comparative mitogenomics in Ophiostomatales
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Ophiostomatoid fungi associated with the northern spruce engraver, Ips perturbatus, in western Canada
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Fungal associates of the lodgepole pine beetle, Dendroctonus murrayanae
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Three new Leptographium spp. (Ophiostomatales) infecting hardwood trees in Norway and Poland
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Programmable Genome Editing Tools and their Regulation for Efficient Genome Engineering
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Selfish DNA: Homing Endonucleases Find a Home
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Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames
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The divorce of Sporothrix and Ophiostoma : solution to a problematic relationship
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Evolution of the mitochondrial genetic system: an overview
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Multiple pathways for sorting mitochondrial precursor proteins
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Artemis: sequence visualization and annotation
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MRBAYES: Bayesian inference of phylogenetic trees
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AliView: a fast and lightweight alignment viewer and editor for large datasets
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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
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Bandage: interactive visualization of de novo genome assemblies
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Mitochondrial genome evolution in yeasts: an all-encompassing view
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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The Sequence Read Archive
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GenBank
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Mammalian NUMT insertion is non-random
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
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Why Mitochondrial Genes are Most Often Found in Nuclei
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
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A novel application of RNase H2-dependent quantitative PCR for detection and quantification of Grosmannia clavigera, a mountain pine beetle fungal symbiont, in environmental samples
inferredcites →https://doi.org/10.1094/pdis.2004.88.11.1174openalex-snapshot
Pathogenicity of Leptographium Species Associated with Loblolly Pine Decline
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Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools
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Circos: An information aesthetic for comparative genomics
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Mitochondrial‐encoded endonucleases drive recombination of protein‐coding genes in yeast
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Mutation Pressure and the Evolution of Organelle Genomic Architecture
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Draft Genome Sequences for Three Ophiostoma Species Acquired during Revisions of Australian Plant Pathogen Reference Collections
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Fungi vectored by the introduced bark beetle Tomicus piniperda in Ontario, Canada, and comments on the taxonomy of Leptographium lundbergii, Leptographium terebrantis, Leptographium truncatum, and Leptographium wingfieldii
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Three new Europhium species with Verticicladiella imperfect states on blue-stained pine
inferredcites →https://doi.org/10.1139/cjm-2017-0605openalex-snapshot
The complete mitochondrial genome of the Dutch elm disease fungus Ophiostoma novo-ulmi subsp. novo-ulmi
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The mitochondrial genome of Ophiostoma himal-ulmi and comparison with other fungi causing Dutch elm disease
inferredcites →https://doi.org/10.1139/cjm-2022-0038openalex-snapshot
The compact mitogenome of Ceratocystiopsis pallidobrunnea
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The Role of Phytopathogenicity in Bark Beetle–Fungus Symbioses: A Challenge to the Classic Paradigm
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2148-11-324openalex-snapshot
Home and away- the evolutionary dynamics of homing endonucleases
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Learning to live together: mutualism between self-splicing introns and their hosts
inferredcites →https://doi.org/10.1186/1759-8753-5-7openalex-snapshot
Homing endonucleases from mobile group I introns: discovery to genome engineering
inferredcites →https://doi.org/10.1186/s12864-020-06846-xopenalex-snapshot
Intra-specific comparison of mitochondrial genomes reveals host gene fragment exchange via intron mobility in Tremella fuciformis
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.1186/s43008-019-0015-5openalex-snapshot
Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes
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Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.
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The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales
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Regulation of Aerobic Energy Metabolism in Podospora anserina by Two Paralogous Genes Encoding Structurally Different c-Subunits of ATP Synthase
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An Integrated Pipeline for de Novo Assembly of Microbial Genomes
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The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements
inferredcites →https://doi.org/10.1534/g3.113.009910openalex-snapshot
Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns
inferredcites →https://doi.org/10.1534/genetics.116.199059openalex-snapshot
Mobile Introns Shape the Genetic Diversity of Their Host Genes
inferredcites →https://doi.org/10.2307/3759724openalex-snapshot
Leptographium Root Diseases on Conifers
inferredcites →https://doi.org/10.3114/sim.2022.101.02openalex-snapshot
Generic boundaries in the Ophiostomatales reconsidered and revised
inferredcites →https://doi.org/10.3114/sim.55.1.75openalex-snapshot
Multi-gene phylogenies define Ceratocystiopsis and Grosmannia distinct from Ophiostoma
inferredcites →https://doi.org/10.3389/fmicb.2018.02079openalex-snapshot
Comparison of the Mitochondrial Genome Sequences of Six Annulohypoxylon stygium Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size
inferredcites →https://doi.org/10.3389/fmicb.2020.00765openalex-snapshot
Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
inferredcites →https://doi.org/10.3389/fmicb.2020.591453openalex-snapshot
The 287,403 bp Mitochondrial Genome of Ectomycorrhizal Fungus Tuber calosporum Reveals Intron Expansion, tRNA Loss, and Gene Rearrangement
inferredcites →https://doi.org/10.3389/fmicb.2020.628579openalex-snapshot
Editorial: The Significance of Mitogenomics in Mycology
inferredcites →https://doi.org/10.3389/fmicb.2021.618649openalex-snapshot
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales
inferredcites →https://doi.org/10.3389/fmicb.2021.787283openalex-snapshot
Global Characterization of Fungal Mitogenomes: New Insights on Genomic Diversity and Dynamism of Coding Genes and Accessory Elements
inferredcites →https://doi.org/10.3389/fmicb.2022.806575openalex-snapshot
From Genome Variation to Molecular Mechanisms: What we Have Learned From Yeast Mitochondrial Genomes?
inferredcites →https://doi.org/10.3389/fmicb.2022.866187openalex-snapshot
Refining Mitochondrial Intron Classification With ERPIN: Identification Based on Conservation of Sequence Plus Secondary Structure Motifs
inferredcites →https://doi.org/10.3389/fpls.2023.1222186openalex-snapshot
Mitochondrial genome annotation with MFannot: a critical analysis of gene identification and gene model prediction
inferredcites →https://doi.org/10.3390/cells10082001openalex-snapshot
Organellar Introns in Fungi, Algae, and Plants
inferredcites →https://doi.org/10.3390/ijms16034518openalex-snapshot
tRNA Biology in Mitochondria
inferredcites →https://doi.org/10.3390/ijms21072645openalex-snapshot
Promising Perspectives for Detection, Identification, and Quantification of Plant Pathogenic Fungi and Oomycetes through Targeting Mitochondrial DNA
inferredcites →https://doi.org/10.3390/molecules28114460openalex-snapshot
Group I Intron as a Potential Target for Antifungal Compounds: Development of a Trans-Splicing High-Throughput Screening Strategy
inferredcites →https://doi.org/10.3852/mycologia.98.1.149openalex-snapshot
A new Leptographium species associated with the northern spruce engraver, Ips perturbatus, in western Canada
inferredcites →https://doi.org/10.5598/imafungus.2011.02.02.06openalex-snapshot
A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names
inferredcites →https://doi.org/10.5598/imafungus.2017.08.01.01openalex-snapshot
A plant pathology perspective of fungal genome sequencing
inferredcites →https://doi.org/10.7554/elife.35330openalex-snapshot
Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.16.159349zenodo-depositor-declared
Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements
inferred← citeshttps://doi.org/10.1139/cjm-2024-0179openalex-snapshot
Comparative mitogenomics of Leptographium procerum, Leptographium terebrantis, and Leptographium wingfieldii, an invasive fungal species in Canadian forests
inferred← citeshttps://doi.org/10.7717/peerj.18322openalex-snapshot
Genome-wide identification and expression analysis of the OSC gene family in Platycodon grandiflorus
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