On the public citation graph

A Codon Usage Shift of Selecting A/T-Ending Optimal Codons in Hexaploid Actinidia Deliciosa is Likely from Environmental Adaptation

https://doi.org/10.2139/ssrn.4808981
0 signed · 69 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20374openalex-snapshot
Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
inferredcites →https://doi.org/10.1007/s00705-020-04533-6openalex-snapshot
Codon usage pattern and its influencing factors in different genomes of hepadnaviruses
inferredcites →https://doi.org/10.1007/s00705-020-04857-3openalex-snapshot
Comprehensive analysis of synonymous codon usage patterns and influencing factors of porcine epidemic diarrhea virus
inferredcites →https://doi.org/10.1007/s11033-021-06749-4openalex-snapshot
Codon usage bias
inferredcites →https://doi.org/10.1007/s11434-010-4290-1openalex-snapshot
Polyploidization and epigenetics
inferredcites →https://doi.org/10.1007/s12041-018-0892-1openalex-snapshot
Codon usage vis-a-vis start and stop codon context analysis of three dicot species
inferredcites →https://doi.org/10.1016/0014-5793(91)80797-7openalex-snapshot
Codon bias and gene expression
inferredcites →https://doi.org/10.1016/0378-1119(90)90491-9openalex-snapshot
The ‘effective number of codons’ used in a gene
inferredcites →https://doi.org/10.1016/j.cell.2015.02.029openalex-snapshot
Codon Optimality Is a Major Determinant of mRNA Stability
inferredcites →https://doi.org/10.1016/j.csbj.2021.04.042openalex-snapshot
Codon-based indices for modeling gene expression and transcript evolution
inferredcites →https://doi.org/10.1016/j.ecoenv.2019.109436openalex-snapshot
Oxidative stress mitigation and initiation of antioxidant and osmoprotectant responses mediated by ascorbic acid in Brassica juncea L. subjected to copper (II) stress
inferredcites →https://doi.org/10.1016/j.gde.2015.11.003openalex-snapshot
Polyploidy and genome evolution in plants
inferredcites →https://doi.org/10.1016/j.gene.2019.100012openalex-snapshot
Codon usage pattern and predicted gene expression in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.pep.2012.02.013openalex-snapshot
Engineering genes for predictable protein expression
inferredcites →https://doi.org/10.1016/j.tig.2012.07.006openalex-snapshot
Speeding with control: codon usage, tRNAs, and ribosomes
inferredcites →https://doi.org/10.1016/s0074-7696(05)44001-2openalex-snapshot
Plastid RNA Polymerases, Promoters, and Transcription Regulators in Higher Plants
inferredcites →https://doi.org/10.1016/s0169-5347(99)01638-9openalex-snapshot
Polyploidy: recurrent formation and genome evolution
inferredcites →https://doi.org/10.1021/cr068221wopenalex-snapshot
Substrate and Docking Interactions in Serine/Threonine Protein Kinases
inferredcites →https://doi.org/10.1038/hdy.2012.79openalex-snapshot
Polyploidy and its effect on evolutionary success: old questions revisited with new tools
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot
The evolutionary significance of polyploidy
inferredcites →https://doi.org/10.1038/nrm.2017.91openalex-snapshot
Codon optimality, bias and usage in translation and mRNA decay
inferredcites →https://doi.org/10.1038/s41576-020-00304-wopenalex-snapshot
Molecular and evolutionary processes generating variation in gene expression
inferredcites →https://doi.org/10.1038/s41598-023-28965-7openalex-snapshot
Machine learning classifiers predict key genomic and evolutionary traits across the kingdoms of life
inferredcites →https://doi.org/10.1038/srep35927openalex-snapshot
Analysis of codon usage patterns in Ginkgo biloba reveals codon usage tendency from A/U-ending to G/C-ending
inferredcites →https://doi.org/10.1073/pnas.1321152111openalex-snapshot
Ecological and evolutionary significance of genomic GC content diversity in monocots
inferredcites →https://doi.org/10.1080/07391102.2004.10506946openalex-snapshot
Synonymous Codon Usage inLactococcus lactis: Mutational Bias Versus Translational Selection
inferredcites →https://doi.org/10.1086/700636openalex-snapshot
Polyploidy, the Nucleotype, and Novelty: The Impact of Genome Doubling on the Biology of the Cell
inferredcites →https://doi.org/10.1093/dnares/dsu017openalex-snapshot
Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias
inferredcites →https://doi.org/10.1093/jexbot/53.370.979openalex-snapshot
The role of glutamine synthetase and glutamate dehydrogenase in nitrogen assimilation and possibilities for improvement in the nitrogen utilization of crops
inferredcites →https://doi.org/10.1093/molbev/msn173openalex-snapshot
Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage
inferredcites →https://doi.org/10.1093/molbev/mss201openalex-snapshot
An Improved Implementation of Effective Number of Codons (Nc)
inferredcites →https://doi.org/10.1093/nar/16.17.8207openalex-snapshot
Codon usage patterns inEscherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogasterandHomo sapiens; a review of the considerable within-species diversity
inferredcites →https://doi.org/10.1093/nar/gki242openalex-snapshot
Variation in the strength of selected codon usage bias among bacteria
inferredcites →https://doi.org/10.1093/nar/gkq009openalex-snapshot
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages
inferredcites →https://doi.org/10.1093/plcell/koaa015openalex-snapshot
Polyploidy: an evolutionary and ecological force in stressful times
inferredcites →https://doi.org/10.1093/protein/gzh093openalex-snapshot
Disulfide bonds, their stereospecific environment and conservation in protein structures
inferredcites →https://doi.org/10.1109/bigdata55660.2022.10020679openalex-snapshot
Predicting Taxonomic Identity and Genetic Composition of Codon Usage Bias Levels Using Deep Learning Models
inferredcites →https://doi.org/10.1111/j.1469-185x.2012.00242.xopenalex-snapshot
Codon usage bias: causative factors, quantification methods and genome‐wide patterns: with emphasis on insect genomes
inferredcites →https://doi.org/10.1111/pbi.12490openalex-snapshot
Codon reassignment to facilitate genetic engineering and biocontainment in the chloroplast of Chlamydomonas reinhardtii
inferredcites →https://doi.org/10.1111/tpj.15363openalex-snapshot
Genome downsizing after polyploidy: mechanisms, rates and selection pressures
inferredcites →https://doi.org/10.1111/tpj.16336openalex-snapshot
Genomic analyses reveal dead‐end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation
inferredcites →https://doi.org/10.1146/annurev-genet-120213-092159openalex-snapshot
Nonadditive Gene Expression in Polyploids
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103835openalex-snapshot
Genetic and Epigenetic Mechanisms for Gene Expression and Phenotypic Variation in Plant Polyploids
inferredcites →https://doi.org/10.1159/000351318openalex-snapshot
Natural Pathways to Polyploidy in Plants and Consequences for Genome Reorganization
inferredcites →https://doi.org/10.1186/1471-2105-6-182openalex-snapshot
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity
inferredcites →https://doi.org/10.1186/1471-2164-14-56openalex-snapshot
Synonymous codon usage bias is correlative to intron number and shows disequilibrium among exons in plants
inferredcites →https://doi.org/10.1186/1752-153x-7-44openalex-snapshot
The multiple roles of histidine in protein interactions
inferredcites →https://doi.org/10.1186/gb-2001-2-4-research0010openalex-snapshot
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
inferredcites →https://doi.org/10.1186/s12862-014-0262-4openalex-snapshot
Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution
inferredcites →https://doi.org/10.1186/s12862-015-0456-4openalex-snapshot
Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution
inferredcites →https://doi.org/10.1186/s12863-023-01143-4openalex-snapshot
An analysis of codon utilization patterns in the chloroplast genomes of three species of Coffea
inferredcites →https://doi.org/10.1186/s12864-015-1596-zopenalex-snapshot
Non-uniqueness of factors constraint on the codon usage in Bombyx mori
inferredcites →https://doi.org/10.1186/s13059-017-1263-6openalex-snapshot
Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants
inferredcites →https://doi.org/10.1186/s13059-018-1611-1openalex-snapshot
Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses
inferredcites →https://doi.org/10.1266/ggs.78.343openalex-snapshot
Patterns of codon usage bias in three dicot and four monocot plant species.
inferredcites →https://doi.org/10.1371/journal.pgen.1000556openalex-snapshot
General Rules for Optimal Codon Choice
inferredcites →https://doi.org/10.1371/journal.pone.0117596openalex-snapshot
The Microgeographical Patterns of Morphological and Molecular Variation of a Mixed Ploidy Population in the Species Complex Actinidia chinensis
inferredcites →https://doi.org/10.1371/journal.pone.0154376openalex-snapshot
Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses
inferredcites →https://doi.org/10.1371/journal.pone.0194372openalex-snapshot
Genome-wide analysis of codon usage bias in four sequenced cotton species
inferredcites →https://doi.org/10.1371/journal.pone.0242624openalex-snapshot
Polyploidization is accompanied by synonymous codon usage bias in the chloroplast genomes of both cotton and wheat
inferredcites →https://doi.org/10.1534/genetics.104.030866openalex-snapshot
Intragenic Spatial Patterns of Codon Usage Bias in Prokaryotic and Eukaryotic Genomes
inferredcites →https://doi.org/10.3389/fgene.2021.732432openalex-snapshot
Comparative Analysis of Genomic and Transcriptome Sequences Reveals Divergent Patterns of Codon Bias in Wheat and Its Ancestor Species
inferredcites →https://doi.org/10.3389/fgene.2022.979902openalex-snapshot
Alteration of synonymous codon usage bias accompanies polyploidization in wheat
inferredcites →https://doi.org/10.3389/fpls.2013.00062openalex-snapshot
Shikimate and Phenylalanine Biosynthesis in the Green Lineage
inferredcites →https://doi.org/10.3390/v14010081openalex-snapshot
Comprehensive Analysis of Codon Usage Patterns in Chinese Porcine Circoviruses Based on Their Major Protein-Coding Sequences
inferredcites →https://doi.org/10.3732/ajb.92.8.1221openalex-snapshot
Codon usage patterns distort phylogenies from or of DNA sequences
inferredcites →https://doi.org/10.3897/compcytogen.17.101427openalex-snapshot
Complete chloroplast genome sequence of Rhododendron mariesii and comparative genomics of related species in the family Ericaeae
inferredcites →https://doi.org/10.6026/97320630004352openalex-snapshot
Genomic adaptation of prokaryotic organisms at high temperature
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.