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Insights Into Chloroplast Genome Evolution Across Opuntioideae (Cactaceae) Reveals Robust Yet Sometimes Conflicting Phylogenetic Topologies
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Outgoing claims: the papers this work cites, builds on, or argues with.
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From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
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Chloroplast primers for clade‐wide phylogenetic studies of Thalictrum
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Complete plastome sequences from Bertholletia excelsa and 23 related species yield informative markers for Lecythidaceae
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Phylogenetic reconstruction of the genus Tephrocactus (Cactaceae) based on molecular, morphological, and cytogenetical data
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Generic delineation, phylogeny and subtribal affinities of Phagnalon and Aliella (Compositae, Gnaphalieae) based on nuclear and chloroplast sequences
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The Plastid Genomes of Flowering Plants
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Plastid Genomes of Seed Plants
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Molecular phylogeny of Dipterocarpaceae in Southeast Asia using RFLP of PCR-amplified chloroplast genes
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inferredcites →https://doi.org/10.1007/s00239-002-2333-yopenalex-snapshot
Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat
inferredcites →https://doi.org/10.1007/s00239-008-9086-4openalex-snapshot
Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes
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Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
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Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny
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One-third of the plastid genes evolved under positive selection in PACMAD grasses
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Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
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Phylogeny of New World Paspalum (Poaceae, Panicoideae, Paspaleae) based on plastid and nuclear markers
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An imprinted long noncoding RNA located between genes Meg8 and Meg9 in the cattle Dlk1-Dio3 domain
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Phylogenomic relationship of feijoa (Acca sellowiana (O.Berg) Burret) with other Myrtaceae based on complete chloroplast genome sequences
inferredcites →https://doi.org/10.1007/s11103-011-9762-4openalex-snapshot
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
inferredcites →https://doi.org/10.1007/s11105-012-0461-3openalex-snapshot
Loss of the Acetyl-CoA Carboxylase (accD) Gene in Poales
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Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea
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Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing
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The phylogenetic relationships of Asparagales in Korea based on five plastid DNA regions
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Comparison of phylogenetic trees
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The phylogenetic position of the genus Astragalus (fabaceae): Evidence from the chloroplast genes rpoC1 and rpoC2
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Structural Diversity Among Plastid Genomes of Land Plants
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Plastome Phylogenetics: 30 Years of Inferences Into Plant Evolution
inferredcites →https://doi.org/10.1016/bs.abr.2017.11.017openalex-snapshot
Aberration or Analogy? The Atypical Plastomes of Geraniaceae
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Comprehensive analyses of molecular phylogeny and main alkaloids for Coptis (Ranunculaceae) species identification
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Complete chloroplast genome and comparative analysis of three Lycium (Solanaceae) species with medicinal and edible properties
inferredcites →https://doi.org/10.1016/j.ode.2006.08.001openalex-snapshot
Phylogeny of basal eudicots: Insights from non-coding and rapidly evolving DNA
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Chloroplast genome of Hibiscus rosa-sinensis (Malvaceae): Comparative analyses and identification of mutational hotspots
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Independence of alignment and tree search
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Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences
inferredcites →https://doi.org/10.1016/j.ympev.2008.12.026openalex-snapshot
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
inferredcites →https://doi.org/10.1016/j.ympev.2010.01.018openalex-snapshot
A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees.
inferredcites →https://doi.org/10.1016/j.ympev.2011.04.008openalex-snapshot
Multi-gene analysis provides a well-supported phylogeny of Rosales
inferredcites →https://doi.org/10.1016/j.ympev.2012.01.002openalex-snapshot
Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits
inferredcites →https://doi.org/10.1016/j.ympev.2012.06.025openalex-snapshot
Diversification in North American arid lands: Niche conservatism, divergence and expansion of habitat explain speciation in the genus Ephedra
inferredcites →https://doi.org/10.1016/j.ympev.2012.07.027openalex-snapshot
Molecular phylogeny and character evolution in terete-stemmed Andean opuntias (Cactaceae−Opuntioideae)
inferredcites →https://doi.org/10.1016/j.ympev.2015.10.003openalex-snapshot
Utilizing next-generation sequencing to resolve the backbone of the Core Goodeniaceae and inform future taxonomic and floral form studies
inferredcites →https://doi.org/10.1016/j.ympev.2015.11.025openalex-snapshot
Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae)
inferredcites →https://doi.org/10.1016/j.ympev.2018.12.023openalex-snapshot
Plastid phylogenomic insights into the evolution of Caryophyllales
inferredcites →https://doi.org/10.1016/j.ympev.2019.05.022openalex-snapshot
Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes
inferredcites →https://doi.org/10.1016/s0367-2530(17)32124-2openalex-snapshot
Environmental Adaptations of the Atacaman Desert Cactus Copiapoa haseltoniana
inferredcites →https://doi.org/10.1017/cbo9781139002950.002openalex-snapshot
A well-supported phylogenetic framework for the monocot order Alismatales reveals multiple losses of the plastid NADH dehydrogenase complex and a strong long-branch effect
inferredcites →https://doi.org/10.1038/348337a0openalex-snapshot
Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
inferredcites →https://doi.org/10.1038/nature01909openalex-snapshot
The plastid clpP1 protease gene is essential for plant development
inferredcites →https://doi.org/10.1038/s41467-019-08822-wopenalex-snapshot
Model selection may not be a mandatory step for phylogeny reconstruction
inferredcites →https://doi.org/10.1038/s41598-017-13401-4openalex-snapshot
Gene losses and partial deletion of small single-copy regions of the chloroplast genomes of two hemiparasitic Taxillus species
inferredcites →https://doi.org/10.1038/s41598-018-31938-wopenalex-snapshot
Reconfiguration of the plastid genome in Lamprocapnos spectabilis: IR boundary shifting, inversion, and intraspecific variation
inferredcites →https://doi.org/10.1038/srep08026openalex-snapshot
Structure of mycobacterial maltokinase, the missing link in the essential GlgE-pathway
inferredcites →https://doi.org/10.1038/srep08348openalex-snapshot
ycf1, the most promising plastid DNA barcode of land plants
inferredcites →https://doi.org/10.1038/srep41926openalex-snapshot
Limb proportions show developmental plasticity in response to embryo movement
inferredcites →https://doi.org/10.1043/06-80.1openalex-snapshot
A Molecular Phylogenetic Study of Arnica (Asteraceae): Low Chloroplast DNA Variation and Problematic Subgeneric Classification
inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01395.xopenalex-snapshot
Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan
inferredcites →https://doi.org/10.1046/j.1365-313x.2000.00722.xopenalex-snapshot
The two largest chloroplast genome‐encoded open reading frames of higher plants are essential genes
inferredcites →https://doi.org/10.1073/pnas.1100628108openalex-snapshot
Contemporaneous and recent radiations of the world's major succulent plant lineages
inferredcites →https://doi.org/10.1073/pnas.1205818109openalex-snapshot
Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales
inferredcites →https://doi.org/10.1073/pnas.91.21.9794openalex-snapshot
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
inferredcites →https://doi.org/10.1073/pnas.97.13.7051openalex-snapshot
The role of genetic and genomic attributes in the success of polyploids
inferredcites →https://doi.org/10.1079/9780851999043.0045openalex-snapshot
Chloroplast genomes of plants.
inferredcites →https://doi.org/10.1080/14620316.2017.1389308openalex-snapshot
The complete chloroplast genome sequence of the folk medicinal and vegetable plant purslane (Portulaca oleraceaL.)
inferredcites →https://doi.org/10.1093/aob/mcs077openalex-snapshot
A molecular phylogeny and classification of Leptochloa (Poaceae: Chloridoideae: Chlorideae) sensu lato and related genera
inferredcites →https://doi.org/10.1093/bioinformatics/btg1005openalex-snapshot
Glocal alignment: finding rearrangements during alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/botlinnean/boz060openalex-snapshot
Plastome phylogenomics of Poaceae: alternate topologies depend on alignment gaps
inferredcites →https://doi.org/10.1093/gbe/evu001openalex-snapshot
The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements
inferredcites →https://doi.org/10.1093/gbe/evv019openalex-snapshot
Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum
inferredcites →https://doi.org/10.1093/gbe/evw115openalex-snapshot
Plastid–Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae
inferredcites →https://doi.org/10.1093/gbe/evx124openalex-snapshot
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
inferredcites →https://doi.org/10.1093/jhered/esy064openalex-snapshot
Phylogenetic Relationships and Evolutionary Trends in the Cactus Family
inferredcites →https://doi.org/10.1093/jxb/err106openalex-snapshot
Drought-stress-induced up-regulation of CAM in seedlings of a tropical cactus, Opuntia elatior, operating predominantly in the C3 mode
inferredcites →https://doi.org/10.1093/molbev/msl089openalex-snapshot
The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
inferredcites →https://doi.org/10.1093/molbev/msq261openalex-snapshot
Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst257openalex-snapshot
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
inferredcites →https://doi.org/10.1093/molbev/msv082openalex-snapshot
A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
inferredcites →https://doi.org/10.1093/molbev/msy200openalex-snapshot
Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments
inferredcites →https://doi.org/10.1093/nar/gkh053openalex-snapshot
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events
inferredcites →https://doi.org/10.1093/nar/gkh152openalex-snapshot
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
inferredcites →https://doi.org/10.1093/nar/gkh458openalex-snapshot
VISTA: computational tools for comparative genomics
inferredcites →https://doi.org/10.1093/nar/gkt289openalex-snapshot
OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
inferredcites →https://doi.org/10.1093/nar/gkw413openalex-snapshot
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
inferredcites →https://doi.org/10.1093/nar/gkw955openalex-snapshot
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
inferredcites →https://doi.org/10.1093/nar/gkx391openalex-snapshot
GeSeq – versatile and accurate annotation of organelle genomes
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003757openalex-snapshot
Sequence-Repeat Polymorphisms Exhibit the Signature of Recombination in Lodgepole Pine Chloroplast DNA
inferredcites →https://doi.org/10.1093/sysbio/syu054openalex-snapshot
Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)
inferredcites →https://doi.org/10.1098/rspb.2015.1553openalex-snapshot
Orchid phylogenomics and multiple drivers of their extraordinary diversification
inferredcites →https://doi.org/10.1101/gr.111955.110openalex-snapshot
Localized hypermutation and associated gene losses in legume chloroplast genomes
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1104/pp.113.214528openalex-snapshot
Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages
inferredcites →https://doi.org/10.1104/pp.114.249052openalex-snapshot
Natural Variation in Sensitivity to a Loss of Chloroplast Translation in Arabidopsis
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/cla.12135openalex-snapshot
A molecular phylogenetic approach to the systematics of Cylindropuntieae (Opuntioideae, Cactaceae)
inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00337.xopenalex-snapshot
Polyploidy in arctic plants
inferredcites →https://doi.org/10.1111/j.1095-8339.2006.00551.xopenalex-snapshot
Phylogenetic relationships of Clematis (Ranunculaceae) based on chloroplast and nuclear DNA sequences
inferredcites →https://doi.org/10.1111/j.1095-8339.2007.00659.xopenalex-snapshot
Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers
inferredcites →https://doi.org/10.1111/j.1095-8339.2009.01022.xopenalex-snapshot
Phylogeny ofPleiochiton(Melastomataceae, Miconieae): total evidence
inferredcites →https://doi.org/10.1111/j.1095-8339.2012.01295.xopenalex-snapshot
Phylogenetic relationships and distribution of New World Melastomeae (Melastomataceae)
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00350.xopenalex-snapshot
Molecular systematics of the Cactaceae
inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02533.xopenalex-snapshot
The tobacco plastid acc D gene is essential and is required for leaf development
inferredcites →https://doi.org/10.1111/jipb.12095openalex-snapshot
Phylogeny and Classification of Prunus sensu lato ( R osaceae)
inferredcites →https://doi.org/10.1111/jse.12101openalex-snapshot
Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography
inferredcites →https://doi.org/10.1111/nph.12752openalex-snapshot
Beyond aridification: multiple explanations for the elevated diversification of cacti in the New World Succulent Biome
inferredcites →https://doi.org/10.1111/nph.13743openalex-snapshot
Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
inferredcites →https://doi.org/10.1111/nph.14375openalex-snapshot
Expansion of inverted repeat does not decrease substitution rates in Pelargonium plastid genomes
inferredcites →https://doi.org/10.1111/nph.14398openalex-snapshot
Plastomes on the edge: the evolutionary breakdown of mycoheterotroph plastid genomes
inferredcites →https://doi.org/10.1111/nph.15851openalex-snapshot
Evolutionary trajectories, accessibility and other metaphors: the case of C4 and CAM photosynthesis
inferredcites →https://doi.org/10.1111/tpj.13525openalex-snapshot
Concomitant loss of NDH complex‐related genes within chloroplast and nuclear genomes in some orchids
inferredcites →https://doi.org/10.1126/science.1229262openalex-snapshot
Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane
inferredcites →https://doi.org/10.1128/aem.02181-07openalex-snapshot
Metagenomics: Read Length Matters
inferredcites →https://doi.org/10.1134/s0006297907120061openalex-snapshot
Phylogeny of flowering plants by the chloroplast genome sequences: in search of a “lucky gene”
inferredcites →https://doi.org/10.1186/1471-2148-8-130openalex-snapshot
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
inferredcites →https://doi.org/10.1186/1471-2164-11-143openalex-snapshot
Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes
inferredcites →https://doi.org/10.1186/1471-2229-10-68openalex-snapshot
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
inferredcites →https://doi.org/10.1186/s12864-015-1498-0openalex-snapshot
Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats
inferredcites →https://doi.org/10.1186/s12870-015-0484-7openalex-snapshot
NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss
inferredcites →https://doi.org/10.1186/s13059-016-1004-2openalex-snapshot
Chloroplast genomes: diversity, evolution, and applications in genetic engineering
inferredcites →https://doi.org/10.1371/journal.pone.0035071openalex-snapshot
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
inferredcites →https://doi.org/10.1371/journal.pone.0038788openalex-snapshot
Evolution and Biogeography of the Slipper Orchids: Eocene Vicariance of the Conduplicate Genera in the Old and New World Tropics
inferredcites →https://doi.org/10.1371/journal.pone.0068591openalex-snapshot
The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm
inferredcites →https://doi.org/10.1371/journal.pone.0077965openalex-snapshot
Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
inferredcites →https://doi.org/10.1371/journal.pone.0082266openalex-snapshot
Predicting Plastid Marker Variation: Can Complete Plastid Genomes from Closely Related Species Help?
inferredcites →https://doi.org/10.1371/journal.pone.0099016openalex-snapshot
Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
inferredcites →https://doi.org/10.1371/journal.pone.0142215openalex-snapshot
Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries
inferredcites →https://doi.org/10.1371/journal.pone.0200293openalex-snapshot
Understanding plastome evolution in Hemiparasitic Santalales: Complete chloroplast genomes of three species, Dendrotrophe varians, Helixanthera parasitica, and Macrosolen cochinchinensis
inferredcites →https://doi.org/10.1371/journal.pone.0218743openalex-snapshot
Plastid genome evolution in tribe Desmodieae (Fabaceae: Papilionoideae)
inferredcites →https://doi.org/10.1385/1-59259-192-2:365openalex-snapshot
Primer3 on the WWW for General Users and for Biologist Programmers
inferredcites →https://doi.org/10.14348/molcells.2014.2296openalex-snapshot
Chloroplast Genome Evolution in Early Diverged Leptosporangiate Ferns
inferredcites →https://doi.org/10.15517/lank.v13i3.14425openalex-snapshot
Generic and Subtribal relationShipS in neotropical cymbidieae (orchidaceae) baSed on matK/ycf1 plaStid data
inferredcites →https://doi.org/10.1600/036364408786500244openalex-snapshot
A Phylogeny of the Tropical Genus Piper Using ITS and the Chloroplast Intron psbJ–petA
inferredcites →https://doi.org/10.1600/036364409787602221openalex-snapshot
Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions
inferredcites →https://doi.org/10.1600/036364409789271290openalex-snapshot
Phylogenetic Relationships of Pinus Subsection Ponderosae Inferred from Rapidly Evolving cpDNA Regions
inferredcites →https://doi.org/10.1600/036364410x539952openalex-snapshot
Molecular Phylogeny of the Genus Ptilostemon (Compositae: Cardueae) and its Relationships with Cynara and Lamyropsis
inferredcites →https://doi.org/10.1600/036364413x662105openalex-snapshot
Phylogeny, Biogeography, and Infrageneric Classification of Harrisia (Cactaceae)
inferredcites →https://doi.org/10.1600/036364413x674724openalex-snapshot
Molecular Phylogeny of Crested Iris Based on Five Plastid Markers (Iridaceae)
inferredcites →https://doi.org/10.1600/036364415x686620openalex-snapshot
A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions
inferredcites →https://doi.org/10.1614/ws-03-143r1openalex-snapshot
Phylogenetic relationships among New MexicoAstragalus mollissimusvarieties andOxytropisspecies by restriction fragment analysis
inferredcites →https://doi.org/10.2307/1554859openalex-snapshot
Four Succulent Families and 40 Million Years of Evolution and Adaptation to Xeric Environments: What Can Stem and Leaf Anatomical Characters Tell Us about Their Phylogeny?
inferredcites →https://doi.org/10.2307/1555064openalex-snapshot
Four succulent families and 40 million years of evolution and adaptation to xeric environments: What can stem and leaf anatomical characters tell us about their phylogeny?
inferredcites →https://doi.org/10.2307/2399279openalex-snapshot
Chloroplast DNA Variation and Plant Phylogeny
inferredcites →https://doi.org/10.2307/2656915openalex-snapshot
A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae
inferredcites →https://doi.org/10.2307/3298585openalex-snapshot
Phylogeny and Subfamilial Classification of the Grasses (Poaceae)
inferredcites →https://doi.org/10.25223/brad.n13.1995.a1openalex-snapshot
Molecular systematic study of the Cactaceae: Using chloroplast DNA variation to elucidate Cactus phylogeny
inferredcites →https://doi.org/10.3372/wi.39.39101openalex-snapshot
ThepetDgroup II intron as a species level marker: utility for tree inference and species identification in the diverse genusCampanula (Campanulaceae)
inferredcites →https://doi.org/10.3372/wi.40.40201openalex-snapshot
A phylogenetic analysis of Pfeiffera and the reinstatement of Lymanbensonia as an independently evolved lineage of epiphytic Cactaceae within a new tribe Lymanbensonieae
inferredcites →https://doi.org/10.3389/fpls.2016.02054openalex-snapshot
The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses
inferredcites →https://doi.org/10.3389/fpls.2017.00334openalex-snapshot
The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales
inferredcites →https://doi.org/10.3389/fpls.2017.01875openalex-snapshot
Plastome Rearrangements in the “Adenocalymma-Neojobertia” Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications
inferredcites →https://doi.org/10.3389/fpls.2018.00965openalex-snapshot
The Complete Chloroplast Genomes of Six Ipomoea Species and Indel Marker Development for the Discrimination of Authentic Pharbitidis Semen (Seeds of I. nil or I. purpurea)
inferredcites →https://doi.org/10.3389/fpls.2019.00005openalex-snapshot
Plastome Sequences Help to Resolve Deep-Level Relationships of Populus in the Family Salicaceae
inferredcites →https://doi.org/10.3389/fpls.2019.00796openalex-snapshot
Comparative Chloroplast Genomics at Low Taxonomic Levels: A Case Study Using Amphilophium (Bignonieae, Bignoniaceae)
inferredcites →https://doi.org/10.3389/fpls.2019.01035openalex-snapshot
Plastid Genomes of Five Species of Riverweeds (Podostemaceae): Structural Organization and Comparative Analysis in Malpighiales
inferredcites →https://doi.org/10.3390/ijms19030716openalex-snapshot
Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
inferredcites →https://doi.org/10.3390/plants8100392openalex-snapshot
De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales)
inferredcites →https://doi.org/10.3732/ajb.1000128openalex-snapshot
Primer development for the plastid region ycf1 in Annonaceae and other magnoliids
inferredcites →https://doi.org/10.3732/ajb.1000129openalex-snapshot
Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae)
inferredcites →https://doi.org/10.3732/ajb.1000144openalex-snapshot
A molecular phylogeny and classification of Verbenaceae
inferredcites →https://doi.org/10.3732/ajb.1100054openalex-snapshot
Molecular phylogeny of Gymnocalycium (Cactaceae): Assessment of alternative infrageneric systems, a new subgenus, and trends in the evolution of the genus
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
inferredcites →https://doi.org/10.3732/ajb.1100375openalex-snapshot
Phylogeny of Opuntia s.s. (Cactaceae): Clade delineation, geographic origins, and reticulate evolution
inferredcites →https://doi.org/10.3732/ajb.1200448openalex-snapshot
Phylogeny and origins of holoparasitism in Orobanchaceae
inferredcites →https://doi.org/10.3732/ajb.1500184openalex-snapshot
Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat
inferredcites →https://doi.org/10.3732/ajb.1500299openalex-snapshot
Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes
inferredcites →https://doi.org/10.3732/ajb.1500412openalex-snapshot
A few‐gene plastid phylogenetic framework for mycoheterotrophic monocots
inferredcites →https://doi.org/10.3732/ajb.89.2.312openalex-snapshot
Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trn K / mat K and trn L‐trn F sequences
inferredcites →https://doi.org/10.3732/ajb.92.1.142openalex-snapshot
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
inferredcites →https://doi.org/10.3732/ajb.92.2.337openalex-snapshot
Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions
inferredcites →https://doi.org/10.3732/ajb.92.7.1177openalex-snapshot
Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form
inferredcites →https://doi.org/10.3732/apps.1400062openalex-snapshot
Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae)
inferredcites →https://doi.org/10.3732/apps.1400085openalex-snapshot
Plastid primers for angiosperm phylogenetics and phylogeography
inferredcites →https://doi.org/10.3897/phytokeys.111.26856openalex-snapshot
Splitting Echinocactus: morphological and molecular evidence support the recognition of Homalocephala as a distinct genus in the Cacteae
inferredcites →https://doi.org/10.5735/085.055.0108openalex-snapshot
Molecular Phylogeny ofAstragalussect.Ammodendron(Fabaceae) Inferred from Chloroplastycf1 Gene
inferredcites →https://doi.org/10.5735/085.055.0122openalex-snapshot
Complete Plastome Sequencing Reveals an Extremely Diminished SSC Region in HemiparasiticPedicularis ishidoyana(Orobanchaceae)
inferredcites →https://doi.org/10.5962/bhl.title.10394openalex-snapshot
Gesamtbeschreibung der Kakteen (Monographia cactacearum)
inferredcites →https://doi.org/10.7717/peerj.2101openalex-snapshot
Complete plastid genome sequence of Primula sinensis (Primulaceae): structure comparison, sequence variation and evidence for accD transfer to nucleus
inferredcites →https://doi.org/10.7717/peerj.2715openalex-snapshot
The first complete plastid genomes of Melastomataceae are highly structurally conserved
inferredcites →https://doi.org/10.7717/peerj.7747openalex-snapshot
Characterizing gene tree conflict in plastome-inferred phylogenies
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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“That’s Opuntia, that was!”, again: a new combination for an old and enigmatic Opuntia s.l. (Cactaceae)
inferred← citeshttps://doi.org/10.1002/ajb2.1610openalex-snapshot
Pleistocene aridification underlies the evolutionary history of the Caribbean endemic, insular, giant Consolea (Opuntioideae)
inferred← citeshttps://doi.org/10.1002/ajb2.1775openalex-snapshot
Plastid phylogenomics of the Gynoxoid group (Senecioneae, Asteraceae) highlights the importance of motif‐based sequence alignment amid low genetic distances
inferred← citeshttps://doi.org/10.1002/tax.12791openalex-snapshot
Phylogenomics of the Caribbean melocacti: Cryptic species and multiple invasions
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Conservation Challenges, Utilization, and Improvement Prospects of Prickly Pear (Opuntia ficus-indica L. Mill)
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The genome of a thorny species: comparative genomic analysis among South and North American Cactaceae
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The plastome of Melocactus glaucescens Buining & Brederoo reveals unique evolutionary features and loss of essential tRNA genes
inferred← citeshttps://doi.org/10.1007/s00606-025-01948-zopenalex-snapshot
Phylogenomics and classification of Cactaceae based on hundreds of nuclear genes
inferred← citeshttps://doi.org/10.1007/s10722-022-01480-wopenalex-snapshot
The first transcriptomic analyses of fruits and cladodes for comparison between three species of Opuntia
inferred← citeshttps://doi.org/10.1007/s10722-026-02943-0openalex-snapshot
Genome size estimation, chloroplast genome characterization, and comparative analysis of Opuntia ficus-indica and O. pubescens reveal phylogenetic relationships within the genus Opuntia
inferred← citeshttps://doi.org/10.1007/s11295-022-01574-7openalex-snapshot
Chloroplast genome assembly and phylogenetic analysis of Pterocarpus dalbergioides Roxb., an endemic timber species
inferred← citeshttps://doi.org/10.1007/s12298-021-01121-zopenalex-snapshot
The complete plastomes of red fleshed pitaya (Selenicereus monacanthus) and three related Selenicereus species: insights into gene losses, inverted repeat expansions and phylogenomic implications
inferred← citeshttps://doi.org/10.1007/s40415-021-00772-2openalex-snapshot
Assembling the puzzle: Complete chloroplast genome sequences of Discocactus bahiensis Britton & Rose and Melocactus ernestii Vaupel (Cactaceae) and their evolutionary significance
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.10.023openalex-snapshot
Loss of plastid ndh genes in an autotrophic desert plant
inferred← citeshttps://doi.org/10.1016/j.indcrop.2025.121477openalex-snapshot
Comprehensive plastome analysis in prickly pear cactus (Opuntia, Cactaceae), a key genus for sustainable fuel and food: Uncovering evolutionary dynamics and germplasm
inferred← citeshttps://doi.org/10.1016/j.sajb.2024.10.023openalex-snapshot
Identification and characterization of sequence variants from a de novo-assembled partial pan-genome of cactus pear (Opuntia L.)
inferred← citeshttps://doi.org/10.1038/s41438-021-00501-6openalex-snapshot
The chromosome-level genome of dragon fruit reveals whole-genome duplication and chromosomal co-localization of betacyanin biosynthetic genes
inferred← citeshttps://doi.org/10.1080/14772000.2021.1967510openalex-snapshot
On the continuum of evolution: a putative new hybrid speciation event in Opuntia (Cactaceae) between a native and an introduced species in southern South America
inferred← citeshttps://doi.org/10.1080/14772000.2025.2524451openalex-snapshot
Reassessment of Platyopuntia brunneogemmia and Platyopuntia rubrogemmia and their recognition within Opuntia (Opuntieae, Cactaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2021.1903356openalex-snapshot
Complete chloroplast genome sequence and phylogenetic analysis of dragon fruit (Selenicereus undatus (Haw.) D.R.Hunt)
inferred← citeshttps://doi.org/10.1080/23802359.2022.2035837openalex-snapshot
The complete chloroplast genome sequence of Opuntia sulphurea (Cactaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2026.2658959openalex-snapshot
The complete chloroplast genome sequence of Lophophora diffusa
inferred← citeshttps://doi.org/10.1086/719959openalex-snapshot
Plastid Genomes of the Hemiparasitic GenusKrameria(Zygophyllales) Are Intact and Exhibit Little Relaxation in Selection
inferred← citeshttps://doi.org/10.1093/aob/mcad098openalex-snapshot
More than a spiny morphology: plastome variation in the prickly pear cacti (Opuntieae)
inferred← citeshttps://doi.org/10.1093/aob/mcaf198openalex-snapshot
Repeated loss of plastid NDH during evolution of land plants
inferred← citeshttps://doi.org/10.1101/2021.10.06.463392openalex-snapshot
Software choice and depth of sequence coverage can impact plastid genome assembly – A case study in the narrow endemic Calligonum bakuense
inferred← citeshttps://doi.org/10.1111/jse.12900openalex-snapshot
Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes
inferred← citeshttps://doi.org/10.1186/s12859-021-04309-yopenalex-snapshot
airpg: automatically accessing the inverted repeats of archived plastid genomes
inferred← citeshttps://doi.org/10.1186/s12870-023-04148-4openalex-snapshot
Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.1186/s12870-025-07945-1openalex-snapshot
Comprehensive species sampling reveals pervasive pseudogenization and recurrent complete loss of plastid ndh genes in the genus Cymbidium (Orchidaceae)
inferred← citeshttps://doi.org/10.13057/biodiv/d221012openalex-snapshot
Identification of dragon fruit (Selenicereus) species in Mekong Delta based on DNA barcode sequences
inferred← citeshttps://doi.org/10.1371/journal.pone.0302365openalex-snapshot
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae
inferred← citeshttps://doi.org/10.1371/journal.pone.0344868openalex-snapshot
Chloroplast genome comparison of Valeriana species with sequence variation, selective pressure, and divergence analysis
inferred← citeshttps://doi.org/10.17129/botsci.3446openalex-snapshot
Two chloroplast genomes with reduced inverted repeat regions in Mammillaria series Stylothelae (Cactaceae)
inferred← citeshttps://doi.org/10.25223/brad.n43.2025.a6openalex-snapshot
Critical notes on escaped and naturalised cacti (Cactaceae) in the island of Madeira (Portugal)
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EVOLUTION OF THE CHOLLAS (CACTACEAE)
inferred← citeshttps://doi.org/10.3389/fgene.2020.560368openalex-snapshot
Initial Complete Chloroplast Genomes of Alchemilla (Rosaceae): Comparative Analysis and Phylogenetic Relationships
inferred← citeshttps://doi.org/10.3389/fgene.2023.1207306openalex-snapshot
Insights into chloroplast genome structure and phylogenetic relationships within the Sesamum species complex (Pedaliaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2021.712064openalex-snapshot
Plastome Evolution in the Hyperdiverse Genus Euphorbia (Euphorbiaceae) Using Phylogenomic and Comparative Analyses: Large-Scale Expansion and Contraction of the Inverted Repeat Region
inferred← citeshttps://doi.org/10.3389/fpls.2022.779830openalex-snapshot
Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study in the Narrow Endemic Calligonum bakuense
inferred← citeshttps://doi.org/10.3389/fpls.2022.851716openalex-snapshot
New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq)
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Chloroplast genome assembly of Serjania erecta Raldk: comparative analysis reveals gene number variation and selection in protein-coding plastid genes of Sapindaceae
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Rapid loss of plastid ndh genes in slipper orchids (Cypripedioideae, Orchidaceae)
inferred← citeshttps://doi.org/10.3390/biology15010014openalex-snapshot
Complete Chloroplast Genome Sequence of the Endemic and Medicinal Plant Zingiber salarkhanii: Comparative Analysis and Phylogenetic Relationships
inferred← citeshttps://doi.org/10.3390/genes13020350openalex-snapshot
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
inferred← citeshttps://doi.org/10.3390/genes13030452openalex-snapshot
Evolutionary Genetics of Cacti: Research Biases, Advances and Prospects
inferred← citeshttps://doi.org/10.3390/genes13040707openalex-snapshot
A target Capture Probe Set Useful for Deep- and Shallow-Level Phylogenetic Studies in Cactaceae
inferred← citeshttps://doi.org/10.3390/horticulturae8090794openalex-snapshot
Comparative Analysis of Complete Chloroplast Genome and Phenotypic Characteristics of Japanese Apricot Accessions
inferred← citeshttps://doi.org/10.3390/ijms26052248openalex-snapshot
Comparative Chloroplast Genomics Reveals Intrageneric Divergence in Salix
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Comparative Genomics, Phylogenetics, Biogeography, and Effects of Climate Change on Toddalia asiatica (L.) Lam. (Rutaceae) from Africa and Asia
inferred← citeshttps://doi.org/10.3390/plants12142677openalex-snapshot
Evolution of the Xerocarpa clade (Opuntia; Opuntieae): Evidence for the Role of the Grand Canyon in the Biogeographic History of the Iconic Beavertail Cactus and Relatives
inferred← citeshttps://doi.org/10.3390/plants9080979openalex-snapshot
Complete Chloroplast Genome of Rhipsalis baccifera, the only Cactus with Natural Distribution in the Old World: Genome Rearrangement, Intron Gain and Loss, and Implications for Phylogenetic Studies
inferred← citeshttps://doi.org/10.3897/phytokeys.172.59497openalex-snapshot
Phylogenetics of Leptocereus (Cactaceae) on Hispaniola: clarifying species limits in the L. weingartianus complex and a new species from the Sierra de Bahoruco
inferred← citeshttps://doi.org/10.3897/phytokeys.210.85668openalex-snapshot
Characterization of the plastome of Physalis cordata and comparative analysis of eight species of Physalis sensu stricto
inferred← citeshttps://doi.org/10.4274/terh.galenos.2021.06978openalex-snapshot
The Effects of Predictive Factors on Patient Prognosis in the Administration of Medical and Surgical Treatment in Patients with Acute Pancreatitis
inferred← citeshttps://doi.org/10.48130/tp-0024-0022openalex-snapshot
Comparative chloroplast genome analysis of Camellia oleifera and C. meiocarpa: phylogenetic relationships, sequence variation and polymorphic markers
inferred← citeshttps://doi.org/10.6084/m9.figshare.16305369openalex-snapshot
Additional file 1 of airpg: automatically accessing the inverted repeats of archived plastid genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.16305372openalex-snapshot
Additional file 2 of airpg: automatically accessing the inverted repeats of archived plastid genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623125openalex-snapshot
Additional file 1 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623128openalex-snapshot
Additional file 2 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623131openalex-snapshot
Additional file 3 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623134openalex-snapshot
Additional file 4 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623137openalex-snapshot
Additional file 5 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.7717/peerj.12400openalex-snapshot
Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
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