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Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1537-2197.1996.tb13901.xopenalex-snapshot
Phylogeny of subfamily Epidendroideae (Orchidaceae) inferred from ndhF chloroplast gene sequences
inferredcites →https://doi.org/10.1007/978-1-62703-995-6_1openalex-snapshot
The Plastid Genomes of Flowering Plants
inferredcites →https://doi.org/10.1007/bf00040588openalex-snapshot
Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa
inferredcites →https://doi.org/10.1007/bf02344542openalex-snapshot
Chloroplast DNA phylogeny of subtribe Dendrobiinae (Orchidaceae): Insights from a combined analysis based onrbcL sequences and restriction site variation
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Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
inferredcites →https://doi.org/10.1007/s00294-009-0249-7openalex-snapshot
Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny
inferredcites →https://doi.org/10.1007/s00442-014-2940-8openalex-snapshot
Nutritional regulation in mixotrophic plants: new insights from Limodorum abortivum
inferredcites →https://doi.org/10.1007/s00606-004-0133-3openalex-snapshot
A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trnL-F and matK sequences
inferredcites →https://doi.org/10.1007/s11103-011-9753-5openalex-snapshot
Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
inferredcites →https://doi.org/10.1007/s11103-012-9884-3openalex-snapshot
Plastid genome evolution in mycoheterotrophic Ericaceae
inferredcites →https://doi.org/10.1007/s11105-014-0833-yopenalex-snapshot
The Largest Plastid Genome of Monocots: a Novel Genome Type Containing AT Residue Repeats in the Slipper Orchid Cypripedium japonicum
inferredcites →https://doi.org/10.1016/b978-0-12-370526-6.x5001-6openalex-snapshot
Mycorrhizal Symbiosis
inferredcites →https://doi.org/10.1016/b978-012370526-6.50014-3openalex-snapshot
The mycorrhizas of green orchids
inferredcites →https://doi.org/10.1016/j.plantsci.2012.04.001openalex-snapshot
The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
inferredcites →https://doi.org/10.1016/j.plaphy.2010.04.009openalex-snapshot
Plastid ndh genes in plant evolution
inferredcites →https://doi.org/10.1016/j.ympev.2014.02.017openalex-snapshot
Phylogenomics of the plant family Araceae
inferredcites →https://doi.org/10.1038/ng.3149openalex-snapshot
The genome sequence of the orchid Phalaenopsis equestris
inferredcites →https://doi.org/10.1038/srep09040openalex-snapshot
The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family
inferredcites →https://doi.org/10.1073/pnas.0708072104openalex-snapshot
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
inferredcites →https://doi.org/10.1073/pnas.0907801107openalex-snapshot
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
inferredcites →https://doi.org/10.1073/pnas.89.22.10648openalex-snapshot
Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant.
inferredcites →https://doi.org/10.1073/pnas.91.21.9794openalex-snapshot
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot
A Rapid Bootstrap Algorithm for the RAxML Web Servers
inferredcites →https://doi.org/10.1093/aob/mcq156openalex-snapshot
Mycoheterotrophy evolved from mixotrophic ancestors: evidence in Cymbidium (Orchidaceae)
inferredcites →https://doi.org/10.1093/aob/mcu253openalex-snapshot
Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/emboj/17.4.868openalex-snapshot
Identification of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes
inferredcites →https://doi.org/10.1093/gbe/evr102openalex-snapshot
Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis
inferredcites →https://doi.org/10.1093/gbe/evu001openalex-snapshot
The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements
inferredcites →https://doi.org/10.1093/gbe/evv019openalex-snapshot
Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum
inferredcites →https://doi.org/10.1093/molbev/msi121openalex-snapshot
More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
inferredcites →https://doi.org/10.1093/molbev/msj029openalex-snapshot
The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications
inferredcites →https://doi.org/10.1093/molbev/msl089openalex-snapshot
The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
inferredcites →https://doi.org/10.1093/molbev/msr028openalex-snapshot
Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/msu252openalex-snapshot
Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms
inferredcites →https://doi.org/10.1093/nar/25.5.0955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1101/gr.209402openalex-snapshot
Comparative Analysis of Chloroplast Genomes: Functional Annotation, Genome-Based Phylogeny, and Deduced Evolutionary Patterns
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/1365-2745.12274openalex-snapshot
Photosynthesis in perennial mixotrophic Epipactis spp. (Orchidaceae) contributes more to shoot and fruit biomass than to hypogeous survival
inferredcites →https://doi.org/10.1111/1755-0998.12251openalex-snapshot
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
inferredcites →https://doi.org/10.1111/boj.12234openalex-snapshot
An updated classification of Orchidaceae
inferredcites →https://doi.org/10.1111/j.1096-0031.2012.00418.xopenalex-snapshot
Plastid genomes and deep relationships among the commelinid monocot angiosperms
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03510.xopenalex-snapshot
The degree of mycoheterotrophic carbon gain in green, variegated and vegetative albino individuals of Cephalanthera damasonium is related to leaf chlorophyll concentrations
inferredcites →https://doi.org/10.1111/nph.12769openalex-snapshot
The latest news from biological interactions in orchids: in love, head to toe
inferredcites →https://doi.org/10.1186/1471-2148-13-84openalex-snapshot
Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
inferredcites →https://doi.org/10.1186/1471-2148-14-82openalex-snapshot
Selecting optimal partitioning schemes for phylogenomic datasets
inferredcites →https://doi.org/10.1186/1471-2148-8-130openalex-snapshot
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
inferredcites →https://doi.org/10.1186/1471-2229-10-68openalex-snapshot
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
inferredcites →https://doi.org/10.1186/1471-2229-6-17openalex-snapshot
Rapid and accurate pyrosequencing of angiosperm plastid genomes.
inferredcites →https://doi.org/10.1186/1471-2229-7-45openalex-snapshot
Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii
inferredcites →https://doi.org/10.1186/1471-2229-7-57openalex-snapshot
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
inferredcites →https://doi.org/10.1371/journal.pone.0034738openalex-snapshot
Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding
inferredcites →https://doi.org/10.1371/journal.pone.0068591openalex-snapshot
The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm
inferredcites →https://doi.org/10.1371/journal.pone.0099016openalex-snapshot
Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
inferredcites →https://doi.org/10.14348/molcells.2014.2296openalex-snapshot
Chloroplast Genome Evolution in Early Diverged Leptosporangiate Ferns
inferredcites →https://doi.org/10.15517/lank.v0i0.11539openalex-snapshot
Pollination of slipper orchids (cypripedioideae): a review
inferredcites →https://doi.org/10.1890/11-2120.1openalex-snapshot
Why do mixotrophic plants stay green? A comparison between green and achlorophyllous orchid individuals in situ
inferredcites →https://doi.org/10.2307/2446204openalex-snapshot
Phylogeny of Subfamily Epidendroideae (Orchidaceae) Inferred from ndhF Chloroplast Gene Sequences
inferredcites →https://doi.org/10.2307/2446538openalex-snapshot
Genome size and karyotype evolution in the slipper orchids (Cypripedioideae: Orchidaceae)
inferredcites →https://doi.org/10.2307/2656938openalex-snapshot
A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences
inferredcites →https://doi.org/10.3109/19401736.2014.1003850openalex-snapshot
Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a Neotropical rupiculous species
inferredcites →https://doi.org/10.3109/19401736.2014.945566openalex-snapshot
The complete chloroplast genome of Phalaenopsis “Tiny Star”
inferredcites →https://doi.org/10.3417/2010023openalex-snapshot
Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales 1
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.08016openalex-snapshot
Taxon sampling and the accuracy of phylogenetic analyses
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
inferredcites →https://doi.org/10.3732/ajb.1100491openalex-snapshot
Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae
inferredcites →https://doi.org/10.3732/ajb.1200256openalex-snapshot
The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/phytotaxa.432.2.10zenodo-depositor-declared
Plastome data provide insights into intra and interspecific diversity and ndh gene loss in Capparis (Capparaceae)
inferred← citeshttps://doi.org/10.1002/ajb2.1001openalex-snapshot
Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum
inferred← citeshttps://doi.org/10.1002/ajb2.16084openalex-snapshot
Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii
inferred← citeshttps://doi.org/10.1002/ece3.73342openalex-snapshot
Complete Chloroplast Genome of the Eria Sensu Lato Complex (Orchidaceae): Comparative Analysis and Phylogenetic Relationship
inferred← citeshttps://doi.org/10.1007/s00425-023-04099-yopenalex-snapshot
A comparative study across the parasitic plants of Cuscuta subgenus Grammica (Convolvulaceae) reveals a possible loss of the plastid genome in its section Subulatae
inferred← citeshttps://doi.org/10.1007/s00606-017-1472-1openalex-snapshot
Sequencing of the plastome in the leafless green mycoheterotroph Cymbidium macrorhizon helps us to understand an early stage of fully mycoheterotrophic plastome structure
inferred← citeshttps://doi.org/10.1007/s12224-019-09356-1openalex-snapshot
Complete plastome sequences of two Neottia species and comparative analysis with other Neottieae species (Orchidaceae)
inferred← citeshttps://doi.org/10.1007/s12686-017-0907-xopenalex-snapshot
The complete chloroplast genome of the rare and endangered herb Paphiopedilum dianthum (Asparagales: Orchidaceae)
inferred← citeshttps://doi.org/10.1007/s40415-019-00524-3openalex-snapshot
Complete chloroplast genome of Anathallis obovata (Orchidaceae: Pleurothallidinae)
inferred← citeshttps://doi.org/10.1007/s40415-021-00772-2openalex-snapshot
Assembling the puzzle: Complete chloroplast genome sequences of Discocactus bahiensis Britton & Rose and Melocactus ernestii Vaupel (Cactaceae) and their evolutionary significance
inferred← citeshttps://doi.org/10.1007/s40415-025-01092-5openalex-snapshot
The complete plastid genome of Gomesa recurva (Orchidaceae: Oncidiinae) and comparative analysis of species in tribe Cymbidieae: genome structure, sequence divergence, and phylogenomic analysis
inferred← citeshttps://doi.org/10.1016/j.apsb.2018.05.009openalex-snapshot
Accurate authentication of Dendrobium officinale and its closely related species by comparative analysis of complete plastomes
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.10.023openalex-snapshot
Loss of plastid ndh genes in an autotrophic desert plant
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146696openalex-snapshot
Comparative analyses of six complete chloroplast genomes from the genus Cupressus and Juniperus (Cupressaceae)
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101124openalex-snapshot
Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization
inferred← citeshttps://doi.org/10.1016/j.ygeno.2024.110940openalex-snapshot
Horizontal gene transfer from chloroplast to mitochondria of seagrasses in the yellow–Bohai seas
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.12.023openalex-snapshot
Plastid phylogenomic insights into the evolution of Caryophyllales
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106721openalex-snapshot
Plastome evolution and phylogeny of subtribe Aeridinae (Vandeae, Orchidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107269openalex-snapshot
Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107544openalex-snapshot
Plastid and mitochondrial phylogenomics reveal correlated substitution rate variation in Koenigia (Polygonoideae, Polygonaceae) and a reduced plastome for Koenigia delicatula including loss of all ndh genes
inferred← citeshttps://doi.org/10.1038/s41598-017-02252-8openalex-snapshot
Comparative analysis of Dendrobium plastomes and utility of plastomic mutational hotspots
inferred← citeshttps://doi.org/10.1038/s41598-017-13401-4openalex-snapshot
Gene losses and partial deletion of small single-copy regions of the chloroplast genomes of two hemiparasitic Taxillus species
inferred← citeshttps://doi.org/10.1038/s41598-018-34825-6openalex-snapshot
Evolution of six novel ORFs in the plastome of Mankyua chejuense and phylogeny of eusporangiate ferns
inferred← citeshttps://doi.org/10.1038/s41598-020-68000-7openalex-snapshot
The dynamic evolution of mobile open reading frames in plastomes of Hymenophyllum Sm. and new insight on Hymenophyllum coreanum Nakai
inferred← citeshttps://doi.org/10.1038/s41598-023-34477-1openalex-snapshot
Comparative plastome genomics, taxonomic delimitation and evolutionary divergences of Tetraena hamiensis var. qatarensis and Tetraena simplex (Zygophyllaceae)
inferred← citeshttps://doi.org/10.1038/s41598-025-01724-6openalex-snapshot
The complete chloroplast genomes of four Aspidopterys species and a comparison with other Malpighiaceae species
inferred← citeshttps://doi.org/10.1038/s41598-025-07744-6openalex-snapshot
Comparative plastome evaluation, phylogenomic analysis, and DNA signatures of medicinally important malvaceous genera and their adulterants
inferred← citeshttps://doi.org/10.1042/bcj20190365openalex-snapshot
The plastid NAD(P)H dehydrogenase-like complex: structure, function and evolutionary dynamics
inferred← citeshttps://doi.org/10.1071/bt22075openalex-snapshot
Retention of an apparently functional plastome in an apparently mycoheterotrophic orchid, Dipodium roseum D.L.Jones & M.A.Clem. (Orchidaceae)
inferred← citeshttps://doi.org/10.1071/bt22075_coopenalex-snapshot
Corrigendum to : Retention of an apparently functional plastome in an apparently mycoheterotrophic orchid, Dipodium roseum D.L.Jones & M.A.Clem. (Orchidaceae)
inferred← citeshttps://doi.org/10.1071/sb18028openalex-snapshot
Evolution of Geosiris (Iridaceae): historical biogeography and plastid-genome evolution in a genus of non-photosynthetic tropical rainforest herbs disjunct across the Indian Ocean
inferred← citeshttps://doi.org/10.1080/23802359.2017.1383201openalex-snapshot
The plastid genome of Vanillon ( Vanilla pompona , Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2017.1419090openalex-snapshot
The complete plastome sequence of Lilium Bulbiferum (Liliaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2019.1660269openalex-snapshot
The complete chloroplast genome sequences of a highly Endangered orchid species Paphiopedilum barbigerum (Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2019.1662752openalex-snapshot
Complete chloroplast genome sequences of an important horticultural orchid: Paphiopedilum hirsutissimum (Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2021.1972049openalex-snapshot
Complete chloroplast genome of a rare and endangered plant species Phalaenopsis zhejiangensis: genomic features and phylogenetic relationship within Orchidaceae
inferred← citeshttps://doi.org/10.1080/23802359.2022.2070041openalex-snapshot
Phylogenetic relationships and characterization of the complete chloroplast genome of Paphiopedilum ‘GZSLKY Youyou’, a hybrid of P. dianthum × P. barbigerum
inferred← citeshttps://doi.org/10.1080/23802359.2022.2088310openalex-snapshot
The complete chloroplast genome sequence of Paphiopedilum henryanum (Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2022.2149249openalex-snapshot
The complete chloroplast genome of Dendrobium moschatum (Buch.-Ham.) Sw. 1805 (Orchidaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2023.2265100openalex-snapshot
Characterizing the chloroplast genome of Mammillaria elongata DC. 1828 in the Cactaceae family and unveiling its phylogenetic affinities within the genus Mammillaria
inferred← citeshttps://doi.org/10.1080/23802359.2024.2397979openalex-snapshot
High-throughput sequencing yields the complete plastid genome of the endemic species Phragmipedium kovachii (Orchidaceae) from northeastern Peru
inferred← citeshttps://doi.org/10.1086/719959openalex-snapshot
Plastid Genomes of the Hemiparasitic GenusKrameria(Zygophyllales) Are Intact and Exhibit Little Relaxation in Selection
inferred← citeshttps://doi.org/10.1093/aob/mcae202openalex-snapshot
Orchid phylogenetics and evolution: history, current status and prospects
inferred← citeshttps://doi.org/10.1093/aob/mcaf148openalex-snapshot
Plastid phylogenomics of the parietal clade of Malpighiales: ancestral genome synteny and congruent signal across exons, introns and spacers in support of Salicaceae relationships
inferred← citeshttps://doi.org/10.1093/aob/mcaf198openalex-snapshot
Repeated loss of plastid NDH during evolution of land plants
inferred← citeshttps://doi.org/10.1093/botlinnean/boae028openalex-snapshot
Plastome analysis elucidates the phylogenetic placement of the mycoheterotrophic genus Yoania (Orchidaceae) and its plastomic degeneration during the evolution of mycoheterotrophy
inferred← citeshttps://doi.org/10.1093/botlinnean/boaf113openalex-snapshot
Unidirectional west-to-east trans-Andean dispersals characterize the biogeography of Dracula Luer (Pleurothallidinae-Orchidaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evaa076openalex-snapshot
Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes
inferred← citeshttps://doi.org/10.1093/gbe/evx180openalex-snapshot
Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids
inferred← citeshttps://doi.org/10.1093/gbe/evz005openalex-snapshot
Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae
inferred← citeshttps://doi.org/10.1093/gbe/evz170openalex-snapshot
Thirteen New Plastid Genomes from Mixotrophic and Autotrophic Species Provide Insights into Heterotrophy Evolution in Neottieae Orchids
inferred← citeshttps://doi.org/10.1093/jxb/eraa149openalex-snapshot
Zygnema circumcarinatum UTEX 1559 chloroplast and mitochondrial genomes provide insight into land plant evolution
inferred← citeshttps://doi.org/10.1101/2022.11.22.517588openalex-snapshot
Not all pathways are the same – unique adaptations to submerged environments emerge from comparative seagrass genomics
inferred← citeshttps://doi.org/10.1111/jipb.70315openalex-snapshot
Orchid genome evolution and trait innovation
inferred← citeshttps://doi.org/10.1111/jse.13069openalex-snapshot
Dense infraspecific sampling reveals cryptic differentiation in the enigmatic hemiparasitic love vine Cassytha filiformis (Lauraceae)
inferred← citeshttps://doi.org/10.1111/nph.15072openalex-snapshot
Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex
inferred← citeshttps://doi.org/10.1111/tpj.13525openalex-snapshot
Concomitant loss of NDH complex‐related genes within chloroplast and nuclear genomes in some orchids
inferred← citeshttps://doi.org/10.1139/cjb-2020-0054openalex-snapshot
What are the genomic consequences for plastids in a mixotrophic orchid (Epipactis helleborine)?
inferred← citeshttps://doi.org/10.1186/s12864-017-3956-3openalex-snapshot
Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family
inferred← citeshttps://doi.org/10.1186/s12870-021-03053-yopenalex-snapshot
The chloroplast genome evolution of Venus slipper (Paphiopedilum): IR expansion, SSC contraction, and highly rearranged SSC regions
inferred← citeshttps://doi.org/10.1186/s12870-022-03529-5openalex-snapshot
Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences
inferred← citeshttps://doi.org/10.1186/s12870-022-03736-0openalex-snapshot
Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.1186/s12870-023-04148-4openalex-snapshot
Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.1186/s12870-023-04233-8openalex-snapshot
Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.1186/s12870-024-05921-9openalex-snapshot
Comparative chloroplast genomics of Caryophyllaceae species: insights into sequence variations and phylogenetic evolution
inferred← citeshttps://doi.org/10.1186/s12870-025-06772-8openalex-snapshot
Comparative analysis of 18 chloroplast genomes reveals genomic diversity and evolutionary dynamics in subtribe Malaxidinae (Orchidaceae)
inferred← citeshttps://doi.org/10.1186/s12870-025-06850-xopenalex-snapshot
Plastome and transcriptome analysis reveals a degenerated photosynthesis-related pathway in the mycoheterotrophic vanilloid orchid Cyrtosia lindleyana
inferred← citeshttps://doi.org/10.1186/s12870-025-07945-1openalex-snapshot
Comprehensive species sampling reveals pervasive pseudogenization and recurrent complete loss of plastid ndh genes in the genus Cymbidium (Orchidaceae)
inferred← citeshttps://doi.org/10.1186/s12870-026-08728-yopenalex-snapshot
Comparative plastome analyses reveal life-form-associated selection signatures in Orchidaceae
inferred← citeshttps://doi.org/10.1186/s12870-026-09583-7openalex-snapshot
Comparative plastome analysis of the Vandenboschia radicans complex in Korea: insights into its evolutionary history
inferred← citeshttps://doi.org/10.13057/biodiv/d211119openalex-snapshot
Intergeneric hybrids of Phalaenopsis 2166 x Vanda ‘Saint Valentine’ showing maternal inheritance: Genetic analysis based on ndhE partial gene
inferred← citeshttps://doi.org/10.1371/journal.pone.0150718openalex-snapshot
Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae
inferred← citeshttps://doi.org/10.1371/journal.pone.0165176openalex-snapshot
The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family
inferred← citeshttps://doi.org/10.1371/journal.pone.0173766openalex-snapshot
The distinct plastid genome structure of Maackia fauriei (Fabaceae: Papilionoideae) and its systematic implications for genistoids and tribe Sophoreae
inferred← citeshttps://doi.org/10.1371/journal.pone.0187318openalex-snapshot
Independent degradation in genes of the plastid ndh gene family in species of the orchid genus Cymbidium (Orchidaceae; Epidendroideae)
inferred← citeshttps://doi.org/10.1371/journal.pone.0202279openalex-snapshot
Organellar genome analysis reveals endosymbiotic gene transfers in tomato
inferred← citeshttps://doi.org/10.1371/journal.pone.0227991openalex-snapshot
Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae)
inferred← citeshttps://doi.org/10.1371/journal.pone.0256126openalex-snapshot
Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data
inferred← citeshttps://doi.org/10.1371/journal.pone.0302365openalex-snapshot
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae
inferred← citeshttps://doi.org/10.18174/390196openalex-snapshot
Utilization of complete chloroplast genomes for phylogenetic studies
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10727611/v1openalex-snapshot
Chloroplast genomes of Vanilla spp. (Orchidaceae) provide new evolutionary insights into the genus
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2487518/v1openalex-snapshot
Comparison of chloroplast genomes of Calypsoinae species (Orchidaceae) living on different lifeforms
inferred← citeshttps://doi.org/10.21203/rs.3.rs-257472/v1openalex-snapshot
The Chloroplast Genome Evolution of Venus Slipper (Paphiopedilum): IR Expansion, SSC Contraction, and Highly Rearranged SSC Regions
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7252682/v1openalex-snapshot
The largest plastome section in Orchidaceae: expanded size and large inversion of Cypripedium sect. Trigonopedia
inferred← citeshttps://doi.org/10.31083/j.fbl2708236openalex-snapshot
Comparative Genomic and Phylogenetic Analysis of Forty Gentiana Chloroplast Genomes
inferred← citeshttps://doi.org/10.3389/fgene.2020.542017openalex-snapshot
Transit From Autotrophism to Heterotrophism: Sequence Variation and Evolution of Chloroplast Genomes in Orobanchaceae Species
inferred← citeshttps://doi.org/10.3389/fgene.2021.772415openalex-snapshot
Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species
inferred← citeshttps://doi.org/10.3389/fgene.2022.998575openalex-snapshot
Comparative phylogenetic analysis of complete plastid genomes of Renanthera (Orchidaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2017.00715openalex-snapshot
The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots
inferred← citeshttps://doi.org/10.3389/fpls.2017.01713openalex-snapshot
Comparative Analysis of the Complete Plastomes of Apostasia wallichii and Neuwiedia singapureana (Apostasioideae) Reveals Different Evolutionary Dynamics of IR/SSC Boundary among Photosynthetic Orchids
inferred← citeshttps://doi.org/10.3389/fpls.2018.00493openalex-snapshot
The Complete Plastome Sequences of Seven Species in Gentiana sect. Kudoa (Gentianaceae): Insights Into Plastid Gene Loss and Molecular Evolution
inferred← citeshttps://doi.org/10.3389/fpls.2018.00689openalex-snapshot
Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships
inferred← citeshttps://doi.org/10.3389/fpls.2019.01761openalex-snapshot
Target Nuclear and Off-Target Plastid Hybrid Enrichment Data Inform a Range of Evolutionary Depths in the Orchid Genus Epidendrum
inferred← citeshttps://doi.org/10.3389/fpls.2020.00022openalex-snapshot
Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences
inferred← citeshttps://doi.org/10.3389/fpls.2020.00151openalex-snapshot
New Insights Into the Plastome Evolution of the Millettioid/Phaseoloid Clade (Papilionoideae, Leguminosae)
inferred← citeshttps://doi.org/10.3389/fpls.2020.00729openalex-snapshot
Insights Into Chloroplast Genome Evolution Across Opuntioideae (Cactaceae) Reveals Robust Yet Sometimes Conflicting Phylogenetic Topologies
inferred← citeshttps://doi.org/10.3389/fpls.2020.00799openalex-snapshot
Comparative Plastid Genomics of Neotropical Bulbophyllum (Orchidaceae; Epidendroideae)
inferred← citeshttps://doi.org/10.3389/fpls.2021.723622openalex-snapshot
Comparative Chloroplast Genomics and Phylogenetic Analysis of Zygophyllum (Zygophyllaceae) of China
inferred← citeshttps://doi.org/10.3389/fpls.2022.1075098openalex-snapshot
The ecological adaptation of the unparalleled plastome character evolution in slipper orchids
inferred← citeshttps://doi.org/10.3389/fpls.2022.1095781openalex-snapshot
The chloroplast genome of black pepper (Piper nigrum L.) and its comparative analysis with related Piper species
inferred← citeshttps://doi.org/10.3389/fpls.2022.850170openalex-snapshot
Molecular Phylogeny and Historical Biogeography of Goodyera R. Br. (Orchidaceae): A Case of the Vicariance Between East Asia and North America
inferred← citeshttps://doi.org/10.3389/fpls.2023.1116040openalex-snapshot
Dynamic hybridization between two spleenworts, Asplenium incisum and Asplenium ruprechtii in Korea
inferred← citeshttps://doi.org/10.3389/fpls.2023.1160446openalex-snapshot
Evolutionary differences in gene loss and pseudogenization among mycoheterotrophic orchids in the tribe Vanilleae (subfamily Vanilloideae)
inferred← citeshttps://doi.org/10.3389/fpls.2024.1388537openalex-snapshot
Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration
inferred← citeshttps://doi.org/10.3389/fpls.2025.1507415openalex-snapshot
Rapid loss of plastid ndh genes in slipper orchids (Cypripedioideae, Orchidaceae)
inferred← citeshttps://doi.org/10.3390/genes14051069openalex-snapshot
The Complete Chloroplast Genomes of Blepharoglossum elegans and B. grossum and Comparative Analysis with Related Species (Orchidaceae, Malaxideae)
inferred← citeshttps://doi.org/10.3390/genes16091028openalex-snapshot
Comparative Chloroplast Genomics of Ten Collabieae Species Including Three Novel Genomes
inferred← citeshttps://doi.org/10.3390/horticulturae10040383openalex-snapshot
Characteristics and Comparative Analysis of the Complete Plastomes of Apostasia fujianica and Neuwiedia malipoensis (Apostasioideae)
inferred← citeshttps://doi.org/10.3390/horticulturae10060603openalex-snapshot
Comparative and Phylogenetic Analyses of the Complete Chloroplast Genomes of Four Ottelia Species
inferred← citeshttps://doi.org/10.3390/horticulturae10121375openalex-snapshot
Characterization of the Complete Chloroplast Genomes and Phylogenetic Analysis of Sapotaceae
inferred← citeshttps://doi.org/10.3390/horticulturae8050391openalex-snapshot
Comparative Analyses of Chloroplast Genomes Provide Comprehensive Insights into the Adaptive Evolution of Paphiopedilum (Orchidaceae)
inferred← citeshttps://doi.org/10.3390/ijms19030716openalex-snapshot
Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
inferred← citeshttps://doi.org/10.3390/ijms20112726openalex-snapshot
Cuscuta Species Identification Based on the Morphology of Reproductive Organs and Complete Chloroplast Genome Sequences
inferred← citeshttps://doi.org/10.3390/ijms20174107openalex-snapshot
Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
inferred← citeshttps://doi.org/10.3390/ijms20225812openalex-snapshot
Gene Losses and Variations in Chloroplast Genome of Parasitic Plant Macrosolen and Phylogenetic Relationships within Santalales
inferred← citeshttps://doi.org/10.3390/ijms24043808openalex-snapshot
Evolutionary Patterns of the Chloroplast Genome in Vanilloid Orchids (Vanilloideae, Orchidaceae)
inferred← citeshttps://doi.org/10.3390/ijms241411448openalex-snapshot
Ancient Horizontal Gene Transfers from Plastome to Mitogenome of a Nonphotosynthetic Orchid, Gastrodia pubilabiata (Epidendroideae, Orchidaceae)
inferred← citeshttps://doi.org/10.3390/ijms25042278openalex-snapshot
Extreme Reconfiguration of Plastid Genomes in Papaveraceae: Rearrangements, Gene Loss, Pseudogenization, IR Expansion, and Repeats
inferred← citeshttps://doi.org/10.3390/ijms25179538openalex-snapshot
Plastome Evolution and Comparative Analyses of a Recently Radiated Genus Vanda (Aeridinae, Orchidaceae)
inferred← citeshttps://doi.org/10.3390/plants10102056openalex-snapshot
Complete Plastome of Three Korean Asarum (Aristolochiaceae): Confirmation Tripartite Structure within Korean Asarum and Comparative Analyses
inferred← citeshttps://doi.org/10.3390/plants9010061openalex-snapshot
Complete Chloroplast Genome of Paphiopedilum delenatii and Phylogenetic Relationships among Orchidaceae
inferred← citeshttps://doi.org/10.3390/plants9040478openalex-snapshot
The Complete Chloroplast Genome of Two Important Annual Clover Species, Trifolium alexandrinum and T. resupinatum: Genome Structure, Comparative Analyses and Phylogenetic Relationships with Relatives in Leguminosae
inferred← citeshttps://doi.org/10.3390/plants9101332openalex-snapshot
Chloroplast Genome Analysis of Two Medicinal Coelogyne spp. (Orchidaceae) Shed Light on the Genetic Information, Comparative Genomics, and Species Identification
inferred← citeshttps://doi.org/10.5735/085.055.0122openalex-snapshot
Complete Plastome Sequencing Reveals an Extremely Diminished SSC Region in HemiparasiticPedicularis ishidoyana(Orobanchaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.14708200openalex-snapshot
Additional file 1 of The chloroplast genome evolution of Venus slipper (Paphiopedilum): IR expansion, SSC contraction, and highly rearranged SSC regions
inferred← citeshttps://doi.org/10.6084/m9.figshare.14708203openalex-snapshot
Additional file 2 of The chloroplast genome evolution of Venus slipper (Paphiopedilum): IR expansion, SSC contraction, and highly rearranged SSC regions
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423869openalex-snapshot
Additional file 1 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423875openalex-snapshot
Additional file 3 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423878openalex-snapshot
Additional file 4 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423887openalex-snapshot
Additional file 7 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423893openalex-snapshot
Additional file 9 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623125openalex-snapshot
Additional file 1 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623128openalex-snapshot
Additional file 2 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623131openalex-snapshot
Additional file 3 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623134openalex-snapshot
Additional file 4 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.22623137openalex-snapshot
Additional file 5 of Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001781openalex-snapshot
Additional file 1 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001784openalex-snapshot
Additional file 2 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001790openalex-snapshot
Additional file 3 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001796openalex-snapshot
Additional file 4 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001799openalex-snapshot
Additional file 5 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001802openalex-snapshot
Additional file 6 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001805openalex-snapshot
Additional file 7 of Comparative analyses and phylogenetic relationships of thirteen Pholidota species (Orchidaceae) inferred from complete chloroplast genomes
inferred← citeshttps://doi.org/10.70675/a464237azb310z49edz8c8dz7c504d1cc77fopenalex-snapshot
Evolution des interactions mycorhiziennes et de la mycohétérotrophie chez les orchidées
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj-cs.116openalex-snapshot
AliTV—interactive visualization of whole genome comparisons
inferred← citeshttps://doi.org/10.7717/peerj.10051openalex-snapshot
Plastome structure and adaptive evolution of Calanthe s.l. species
inferred← citeshttps://doi.org/10.7717/peerj.12400openalex-snapshot
Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
inferred← citeshttps://doi.org/10.7717/peerj.15322openalex-snapshot
Comparison of the chloroplast genomes and phylogenomic analysis of Elaeocarpaceae
inferred← citeshttps://doi.org/10.7717/peerj.17335openalex-snapshot
The chloroplast genome inheritance pattern of the Deli-Nigerian prospection material (NPM) × Yangambi population of Elaeis guineensis Jacq
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