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An Overview of Genomics, Phylogenomics and Proteomics Approaches in Ascomycota

https://doi.org/10.3390/life10120356

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The role of the ubiquitin–proteasome system in the response of the ligninolytic fungus Trametes versicolor to nitrogen deprivation

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Heterokaryons and parasexual recombinants of Cryphonectria parasitica in two clonal populations in southeastern Europe

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A molecular phylogeny of thermophilic fungi

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Alteration of protein patterns in black rock inhabiting fungi as a response to different temperatures

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iTRAQ-based quantitative proteomic analysis of conidia and mycelium in the filamentous fungus Metarhizium robertsii

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Review of General Algorithmic Features for Genome Assemblers for Next Generation Sequencers

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Identification of virulence determinants of the human pathogenic fungi Aspergillus fumigatus and Candida albicans by proteomics

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Proteomic analysis of the phytogenic fungus Sclerotinia sclerotiorum

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Proteome of tolerance fine-tuning in the human pathogen black yeast Exophiala dermatitidis

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The response of Paracoccidioides spp. to nitrosative stress

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Advances in fungal proteomics

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Relative symbiont input and the lichen symbiotic outcome

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Understanding protein adaptations can help us solve real problems

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Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota )

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101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens

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Phylogenomics: the beginning of incongruence?

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The Third Revolution in Sequencing Technology

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Mass spectrometry-based proteomics of fungal wall glycoproteins

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Whole-genome sequencing of the endemic Antarctic fungus Antarctomyces pellizariae reveals an ice-binding protein, a scarce set of secondary metabolites gene clusters and provides insights on Thelebolales phylogeny

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A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

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Response to cadmium in higher plants

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Volatilisation and biodegradation during air sparging of dissolved BTEX-contaminated groundwater

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The fungal dimension of biodiversity: magnitude, significance, and conservation

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The Phylogenetic Handbook

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Assessing substitution saturation with DAMBE

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The draft genome of the lichen-forming fungusLasallia hispanica(Frey) Sancho & A. Crespo

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Symbiotic Interplay of Fungi, Algae, and Bacteria within the Lung Lichen Lobaria pulmonaria L. Hoffm. as Assessed by State-of-the-Art Metaproteomics

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Global Secretome Characterization of the Pathogenic Yeast Candida glabrata

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Impact of an Antifungal Insect Defensin on the Proteome of the Phytopathogenic Fungus Botrytis cinerea

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Quantitative iTRAQ Secretome Analysis of Aspergillus niger Reveals Novel Hydrolytic Enzymes

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Vesicle and Vesicle-Free Extracellular Proteome of Paracoccidioides brasiliensis: Comparative Analysis with Other Pathogenic Fungi

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Secretome of the Biocontrol Agent Metarhizium anisopliae Induced by the Cuticle of the Cotton Pest Dysdercus peruvianus Reveals New Insights into Infection

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Proteomics to study genes and genomes

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Major fungal lineages are derived from lichen symbiotic ancestors

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Strategies for the systematic sequencing of complex genomes

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Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

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Mass spectrometry-based proteomics

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Genome-scale approaches to resolving incongruence in molecular phylogenies

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Single-molecule sequencing of an individual human genome

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Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

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Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

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Three decades of nanopore sequencing

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Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp.

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

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