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What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Biatriospora (Ascomycota: Pleosporales) is an ecologically diverse genus including facultative marine fungi and endophytes with biotechnological potential
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Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host
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Factors shaping community structure of endophytic fungi–evidence from the Pinus-Viscum-system
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Improving ITS sequence data for identification of plant pathogenic fungi
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Plant-associated fungal communities in the light of meta’omics
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Advancing Our Understanding of the Human Microbiome Using QIIME
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Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers
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A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)
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An investigation of the biodiversity of thermophilic and thermotolerant fungal species in composts using culture-based and molecular techniques
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Scraping the bottom of the barrel: are rare high throughput sequences artifacts?
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FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
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Richness of cultivable endophytic fungi along an altitudinal gradient in wet forests of Costa Rica
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A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition
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The diverse community of leaf-inhabiting fungal endophytes from Philippine natural forests reflects phylogenetic patterns of their host plant species Ficus benjamina, F. elastica and F. religiosa
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Dilution-to-extinction cultivation of leaf-inhabiting endophytic fungi in beech (Fagus sylvatica L.) – Different cultivation techniques influence fungal biodiversity assessment
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Comparison between cultivated and total bacterial communities associated with Cucurbita pepo using cultivation-dependent techniques and 454 pyrosequencing
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Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
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The local environment determines the assembly of root endophytic fungi at a continental scale
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Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
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Molecular diagnostics of clinical strains of filamentous Basidiomycetes
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Fungal endophytes: diversity and functional roles
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The composition of phyllosphere fungal assemblages of E uropean beech ( F agus sylvatica) varies significantly along an elevation gradient
inferredcites →https://doi.org/10.1111/j.1574-6941.2005.00010.xopenalex-snapshot
Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies (L.) Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification
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High-throughput culturing of fungi from plant litter by a dilution-to-extinction technique
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Evaluation of culture-based techniques and 454 pyrosequencing for the analysis of fungal diversity in potting media and organic fertilizers
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Towards a unified paradigm for sequence‐based identification of fungi
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The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic
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Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition
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Analysis of Fungal Flora in Indoor Dust by Ribosomal DNA Sequence Analysis, Quantitative PCR, and Culture
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Microbiology of the Phyllosphere
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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
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A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
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Diversity and Composition of the Leaf Mycobiome of Beech (Fagus sylvatica) Are Affected by Local Habitat Conditions and Leaf Biochemistry
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Diversity and Evenness: A Unifying Notation and Its Consequences
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Host and geographic structure of endophytic and endolichenic fungi at a continental scale
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Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)
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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← backgroundhttps://doi.org/10.3897/mycokeys.20.11265.suppl1zenodo-depositor-declared
Supplementary material 1 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations…
inferred← backgroundhttps://doi.org/10.3897/mycokeys.20.11265.suppl2zenodo-depositor-declared
Supplementary material 2 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations…
inferred← backgroundhttps://doi.org/10.3897/mycokeys.20.11265.suppl3zenodo-depositor-declared
Supplementary material 3 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations…
inferred← backgroundhttps://doi.org/10.3897/mycokeys.20.11265.suppl4zenodo-depositor-declared
Supplementary material 4 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations…
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inferred← citeshttps://doi.org/10.1007/s00442-018-4097-3openalex-snapshot
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Methods for studying the forest tree microbiome
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Specific network and phylosymbiosis pattern in endophyte community of coastal halophytes
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Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi
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Host tree organ is the primary driver of endophytic fungal community structure in a hemiboreal forest
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Characterization of Foliar Fungal Endophyte Communities from White Pine Blister Rust Resistant and Susceptible Pinus flexilis in Natural Stands in the Southern Rocky Mountains
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Soybean Fungal Endophytes Alternaria and Diaporthe spp. are Differentially Impacted by Fungicide Application
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The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01015openalex-snapshot
Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
inferred← citeshttps://doi.org/10.3389/fmicb.2021.646302openalex-snapshot
Mycobiomes of Young Beech Trees Are Distinguished by Organ Rather Than by Habitat, and Community Analyses Suggest Competitive Interactions Among Twig Fungi
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1220431openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/f10010042openalex-snapshot
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