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Phylogenomic evidence for a recent and rapid radiation of lizards in the Patagonian Liolaemus fitzingerii species group

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Speciation, population structure, and demographic history of the Mojave Fringe‐toed Lizard (Uma scoparia), a species of conservation concern
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Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates
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Difficulties in Detecting Hybridization
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Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Quartet Inference from SNP Data Under the Coalescent Model
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The BPP program for species tree estimation and species delimitation
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Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing
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Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
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Isolation with Migration Models for More Than Two Populations
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
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Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)
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Evaluation of a Bayesian Coalescent Method of Species Delimitation
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Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
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Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales
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Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods
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Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics
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Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Genome-wide evidence for speciation with gene flow in Heliconius butterflies
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BLAT —The BLAST -Like Alignment Tool
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Using genomic data to unravel the root of the placental mammal phylogeny
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An evaluation of transcriptome‐based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura)
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Flexible methods for estimating genetic distances from single nucleotide polymorphisms
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Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow‐mouth frogs
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PHYLOGENY AND PHYLOGEOGRAPHY OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE): EVIDENCE FOR INTROGRESSION AND INCOMPLETE LINEAGE SORTING
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Congeneric phylogeography: hypothesizing species limits and evolutionary processes in Patagonian lizards of the Liolaemus boulengeri group (Squamata: Liolaemini)
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Emerging phylogeographical patterns of plants and terrestrial vertebrates from Patagonia
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RECONSTRUCTING CHARACTER EVOLUTION ON POLYTOMOUS CLADOGRAMS
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Molecular dating and diversification of the South American lizard genus Liolaemus (subgenus Eulaemus) based on nuclear and mitochondrial DNA sequences
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THE COMBINED EFFECTS OF RIVERS AND REFUGIA GENERATE EXTREME CRYPTIC FRAGMENTATION WITHIN THE COMMON GROUND SKINK (SCINCELLA LATERALIS)
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Model-based approach to test hard polytomies in theEulaemusclade of the most diverse South American lizard genusLiolaemus(Liolaemini, Squamata)
inferredcites →https://doi.org/10.1111/zsc.12053openalex-snapshot
Multilocus phylogeny of the widely distributed South American lizard clade E ulaemus (Liolaemini, Liolaemus)
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Melanism and ontogeny: a case study in lizards of the Liolaemus fitzingerii group (Squamata: Liolaemini)
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Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA
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Phylogeny of the boulengeri group (Iguania: Liolaemidae, Liolaemus) based on morphological and molecular characters
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A new species of Liolaemus (Reptilia: Squamata) from southwestern Rio Negro province, northern Patagonia, Argentina
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Taxonomic study and morphology based phylogeny of the patagonic clade Liolaemus melanops group (Iguania: Liolaemidae), with the description of three new taxa
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From the far reaches of Patagonia: new phylogenetic analyses and description of two new species of the Liolaemus fitzingerii clade (Iguania: Liolaemidae)
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PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
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Genome-scale evidence of the nematode-arthropod clade
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Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)?
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Bushes in the Tree of Life
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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
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Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
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Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1670/06-244r2.1openalex-snapshot
New Species of the Iguanian Lizard Genus Liolaemus (Squamata, Iguania, Liolaemini) from Central Patagonia, Argentina
inferredcites →https://doi.org/10.31017/1237openalex-snapshot
Estudio comparativo del melanismo en lagartijas del grupo Liolaemus fitzingerii (Liolaemini: Liolaemus)
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Error in Phylogenetic Estimation for Bushes in the Tree of Life
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From the far reaches of Patagonia: new phylogenetic analyses and description of two new species of the Liolaemus fitzingerii clade (Iguania: Liolaemidae)
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MacManes Salt Extraction Protocol
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Phylogenomic analysis of the Chilean clade ofLiolaemuslizards (Squamata: Liolaemidae) based on sequence capture data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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SNP-based phylogenomic inference in Holarctic ground squirrels (Urocitellus)
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ddRAD-seq reveals population structure and long-term demographic histories of North American Microtus vole species
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