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EaMEAD: Activation Energy Prediction of Cytochrome P450 Mediated Metabolism with Effective Atomic Descriptors
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Which Oxidant Is Really Responsible for Sulfur Oxidation by Cytochrome P450?
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High‐Accuracy Computation of Reaction Barriers in Enzymes
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A Density Functional Study of the Factors That Influence the Regioselectivity of Toluene Hydroxylation by Cytochrome P450 Enzymes
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Progesterone and Testosterone Hydroxylation by Cytochromes P450 2C19, 2C9, and 3A4 in Human Liver Microsomes
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An Assessment of the Reaction Energetics for Cytochrome P450-Mediated Reactions
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Iterative partial equalization of orbital electronegativity—a rapid access to atomic charges
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Human cytochrome P450 isoform specificity in the regioselective metabolism of toluene and o-, m- and p-xylene.
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Microsomal hydroxylation of specifically deuterated monosubstituted benzenes. Evidence for direct aromatic hydroxylation
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A New Statistical Approach to Predicting Aromatic Hydroxylation Sites. Comparison with Model-Based Approaches
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Prediction of Cytochrome P450 3A4, 2D6, and 2C9 Inhibitors and Substrates by Using Support Vector Machines
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Reaction Site Mapping of Xenobiotic Biotransformations
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Ligand-Based Models for the Isoform Specificity of Cytochrome P450 3A4, 2D6, and 2C9 Substrates
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New Combined Model for the Prediction of Regioselectivity in Cytochrome P450/3A4 Mediated Metabolism
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Regioselectivity Prediction of CYP1A2-Mediated Phase I Metabolism
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Virtual Screening and Prediction of Site of Metabolism for Cytochrome P450 1A2 Ligands
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Determination of net atomic charges using a modified partial equalization of orbital electronegativity method. 1. Application to neutral molecules as models for polypeptides
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Determination of net atomic charges using a modified partial equalization of orbital electronegativity method. 2. Application to ionic and aromatic molecules as models for polypeptides
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An empirical method to calculate average molecular polarizabilities from the dependence of effective atomic polarizabilities on net atomic charge
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Theoretical studies on cytochrome P-450 mediated hydroxylation: a predictive model for hydrogen atom abstractions
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Stereochemical dynamics of aliphatic hydroxylation by cytochrome P-450
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Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model
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A Model for Predicting Likely Sites of CYP3A4-mediated Metabolism on Drug-like Molecules
inferredcites →https://doi.org/10.1021/jm020538aopenalex-snapshot
Construction and Assessment of Models of CYP2E1: Predictions of Metabolism from Docking, Molecular Dynamics, and Density Functional Theoretical Calculations
inferredcites →https://doi.org/10.1021/jm021104iopenalex-snapshot
Predicting Drug Metabolism: A Site of Metabolism Prediction Tool Applied to the Cytochrome P450 2C9
inferredcites →https://doi.org/10.1021/jm040180dopenalex-snapshot
Cytochrome P450 in Silico: An Integrative Modeling Approach
inferredcites →https://doi.org/10.1021/jm049934eopenalex-snapshot
Validation of Model of Cytochrome P450 2D6: An in Silico Tool for Predicting Metabolism and Inhibition
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Metabolic Regio- and Stereoselectivity of Cytochrome P450 2D6 towards 3,4-Methylenedioxy-N-alkylamphetamines: in Silico Predictions and Experimental Validation
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MetaSite: Understanding Metabolism in Human Cytochromes from the Perspective of the Chemist
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Catalytic Site Prediction and Virtual Screening of Cytochrome P450 2D6 Substrates by Consideration of Water and Rescoring in Automated Docking
inferredcites →https://doi.org/10.1021/jm060551lopenalex-snapshot
Prediction of Activation Energies for Hydrogen Abstraction by Cytochrome P450
inferredcites →https://doi.org/10.1021/jm0705096openalex-snapshot
CYP2C9 Structure−Metabolism Relationships: Optimizing the Metabolic Stability of COX-2 Inhibitors
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CYP2C9 Structure−Metabolism Relationships: Substrates, Inhibitors, and Metabolites
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Prediction of Metabolism by Cytochrome P450 2C9: Alignment and Docking Studies of a Validated Database of Substrates
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Free radical addition: factors determining the activation energy
inferredcites →https://doi.org/10.1073/pnas.92.24.11076openalex-snapshot
Designing safer chemicals: predicting the rates of metabolism of halogenated alkanes.
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The Structure of Human Microsomal Cytochrome P450 3A4 Determined by X-ray Crystallography to 2.05-Å Resolution
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Crystal Structures of Human Cytochrome P450 3A4 Bound to Metyrapone and Progesterone
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Reactivity‐Based Approaches and Machine Learning Methods for Predicting the Sites of Cytochrome P450‐Mediated Metabolism
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Metabolic Forest: Predicting the Diverse Structures of Drug Metabolites
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RS-Predictor: A New Tool for Predicting Sites of Cytochrome P450-Mediated Metabolism Applied to CYP 3A4
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RS-Predictor Models Augmented with SMARTCyp Reactivities: Robust Metabolic Regioselectivity Predictions for Nine CYP Isozymes
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Prediction of Cytochrome P450 Xenobiotic Metabolism: Tethered Docking and Reactivity Derived from Ligand Molecular Orbital Analysis
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FAst MEtabolizer (FAME): A Rapid and Accurate Predictor of Sites of Metabolism in Multiple Species by Endogenous Enzymes
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Développement de modèles prédictifs de la toxicocinétique de substances organiques
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