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Engineering microbial consortia for controllable outputs

https://doi.org/10.1038/ismej.2016.26
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Deciphering the d-/l-lactate-producing microbiota and manipulating their accumulation during solid-state fermentation of cereal vinegar
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Microorganism-mediated production of anthocyanins: Current progress and future prospects
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e28754openalex-snapshot
Impact of historical soil management on the interaction of plant-growth-promoting bacteria with maize (Zea mays L.)
inferred← citeshttps://doi.org/10.1016/j.jece.2026.125027openalex-snapshot
From metabolic burden to distributed function: AI-guided engineering of microbial consortia for industrial and hazardous waste remediation
inferred← citeshttps://doi.org/10.1016/j.jenvman.2019.06.018openalex-snapshot
Analysis of petroleum biodegradation by a bacterial consortium isolated from worms of the polychaeta class (Annelida): Implications for NPK fertilizer supplementation
inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.124647openalex-snapshot
Periphyton as a nature-based solution for remediation of degraded Zoige alpine wetlands: Process, effects and evaluation
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2017.08.068openalex-snapshot
Functional sustainability of periphytic biofilms in organic matter and Cu2+ removal during prolonged exposure to TiO2 nanoparticles
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2021.126384openalex-snapshot
Mechanistic insights into the success of xenobiotic degraders resolved from metagenomes of microbial enrichment cultures
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2023.130751openalex-snapshot
Functional characterization of an efficient ibuprofen-mineralizing bacterial consortium
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2024.135773openalex-snapshot
Characteristics and functional bacteria of an efficient benzocaine-mineralizing bacterial consortium
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2026.142454openalex-snapshot
Divergent structure but convergent metabolic organization of tetrabromobisphenol A degrading microbial consortia from aerobic and anaerobic conditions
inferred← citeshttps://doi.org/10.1016/j.jrhm.2016.11.007openalex-snapshot
Female reproductive tract microbiome in gynecological health and problems
inferred← citeshttps://doi.org/10.1016/j.marchem.2026.104665openalex-snapshot
Pollutant triggers at ocean interfaces: how microhabitats rewire microbial biodegradation and valorization
inferred← citeshttps://doi.org/10.1016/j.mib.2017.11.018openalex-snapshot
Bacterial social interactions and the emergence of community-intrinsic properties
inferred← citeshttps://doi.org/10.1016/j.mib.2017.11.023openalex-snapshot
Road MAPs to engineer host microbiomes
inferred← citeshttps://doi.org/10.1016/j.mib.2017.12.007openalex-snapshot
Designer microbiomes for environmental, energy and health biotechnology
inferred← citeshttps://doi.org/10.1016/j.mib.2021.09.008openalex-snapshot
Microbial communities and their enzymes facilitate degradation of recalcitrant polymers in anaerobic digestion
inferred← citeshttps://doi.org/10.1016/j.mib.2023.102400openalex-snapshot
Artificial selection of microbial communities: what have we learnt and how can we improve?
inferred← citeshttps://doi.org/10.1016/j.nahs.2026.101729openalex-snapshot
A hybrid systems formulation to phenotype switching for ratiometric control in a bacterial community
inferred← citeshttps://doi.org/10.1016/j.oneear.2020.12.006openalex-snapshot
Innovating carbon-capture biotechnologies through ecosystem-inspired solutions
inferred← citeshttps://doi.org/10.1016/j.pedsph.2024.02.005openalex-snapshot
A comprehensive evaluation of the potential of plant growth-promoting rhizobacteria for applications in agriculture in stressed environments
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.05.290openalex-snapshot
Effect of mixed soil microbiomes on pyrene removal and the response of the soil microorganisms
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.140682openalex-snapshot
Beneficial features of plant growth-promoting rhizobacteria for improving plant growth and health in challenging conditions: A methodical review
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.170297openalex-snapshot
Microbial consortia-mediated arsenic bioremediation in agricultural soils: Current status, challenges, and solutions
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.177916openalex-snapshot
Microbial adaptation and genetic modifications for enhanced remediation in low-permeability soils
inferred← citeshttps://doi.org/10.1016/j.synbio.2016.08.004openalex-snapshot
Design and construction of synthetic microbial consortia in China
inferred← citeshttps://doi.org/10.1016/j.tibtech.2018.11.002openalex-snapshot
Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology
inferred← citeshttps://doi.org/10.1016/j.tibtech.2018.11.004openalex-snapshot
Microbial Consortium Design Benefits from Metabolic Modeling
inferred← citeshttps://doi.org/10.1016/j.tibtech.2020.03.012openalex-snapshot
Using Microbial Aggregates to Entrap Aqueous Phosphorus
inferred← citeshttps://doi.org/10.1016/j.tibtech.2022.11.001openalex-snapshot
Toward predictive engineering of gene circuits
inferred← citeshttps://doi.org/10.1016/j.tibtech.2023.03.007openalex-snapshot
Synthetic biology for plant genetic engineering and molecular farming
inferred← citeshttps://doi.org/10.1016/j.tibtech.2023.12.003openalex-snapshot
Understanding phycosomal dynamics to improve industrial microalgae cultivation
inferred← citeshttps://doi.org/10.1016/j.tim.2017.05.012openalex-snapshot
Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia
inferred← citeshttps://doi.org/10.1016/j.watres.2020.116468openalex-snapshot
Quantitative assessment of morphological traits of planktonic bacterial aggregates
inferred← citeshttps://doi.org/10.1016/j.watres.2021.117696openalex-snapshot
Tracking de novo protein synthesis in the activated sludge microbiome using BONCAT-FACS
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120132openalex-snapshot
Deciphering of sulfonamide biodegradation mechanism in wetland sediments: from microbial community and individual populations to pathway and functional genes
inferred← citeshttps://doi.org/10.1016/j.watres.2025.123270openalex-snapshot
Synthetic microbial community maintains the functional stability of aerobic denitrification under environmental disturbances: Insight into the mechanism of interspecific division of labor
inferred← citeshttps://doi.org/10.1016/j.watres.2025.124921openalex-snapshot
Higher microbial diversity enhances the extent and rate of organic micropollutant biodegradation under aerobic and nitrate-reducing conditions
inferred← citeshttps://doi.org/10.1016/j.watres.2025.125236openalex-snapshot
Early application of low-dose Mn₃O₄ NMs enhances the UVB resistance of periphytic biofilms through the modulation of antioxidant defense and bacterial community
inferred← citeshttps://doi.org/10.1016/j.ymben.2018.03.016openalex-snapshot
Convergent engineering of syntrophic Escherichia coli coculture for efficient production of glycosides
inferred← citeshttps://doi.org/10.1016/j.ymben.2021.07.002openalex-snapshot
Combinational quorum sensing devices for dynamic control in cross-feeding cocultivation
inferred← citeshttps://doi.org/10.1016/j.ymben.2021.11.014openalex-snapshot
Organic waste conversion through anaerobic digestion: A critical insight into the metabolic pathways and microbial interactions
inferred← citeshttps://doi.org/10.1016/j.ymben.2022.02.001openalex-snapshot
Reprint of Organic waste conversion through anaerobic digestion: A critical insight into the metabolic pathways and microbial interactions
inferred← citeshttps://doi.org/10.1016/j.ymben.2023.09.010openalex-snapshot
Co-cultivation of Saccharomyces cerevisiae strains combines advantages of different metabolic engineering strategies for improved ethanol yield
inferred← citeshttps://doi.org/10.1017/9781108607667.019openalex-snapshot
Prospecting Crop Wild Relatives for Beneficial Endophytes
inferred← citeshttps://doi.org/10.1017/9781108654418.009openalex-snapshot
Microbial biotechnology
inferred← citeshttps://doi.org/10.1021/acs.biochem.8b01006openalex-snapshot
Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities
inferred← citeshttps://doi.org/10.1021/acs.chemrev.2c00431openalex-snapshot
Microbiome and Human Health: Current Understanding, Engineering, and Enabling Technologies
inferred← citeshttps://doi.org/10.1021/acs.chemrev.2c00512openalex-snapshot
Engineered Living Materials For Sustainability
inferred← citeshttps://doi.org/10.1021/acs.est.0c06687openalex-snapshot
Microbial Interactions Drive the Complete Catabolism of the Antibiotic Sulfamethoxazole in Activated Sludge Microbiomes
inferred← citeshttps://doi.org/10.1021/acs.est.6b03256openalex-snapshot
Power of Plankton: Effects of Algal Biodiversity on Biocrude Production and Stability
inferred← citeshttps://doi.org/10.1021/acs.est.6c01112openalex-snapshot
Machine Learning-Guided Synthetic Microbial Communities Enable Functional and Sustainable Degradation of Persistent Environmental Pollutants
inferred← citeshttps://doi.org/10.1021/acs.iecr.9b03190openalex-snapshot
110th Anniversary: High-Order Interactions Can Eclipse Pairwise Interactions in Shaping the Structure of Microbial Communities
inferred← citeshttps://doi.org/10.1021/acselectrochem.4c00081openalex-snapshot
Endogenous Antibiotics as Extracellular Electron Shuttles for Microbacterium spp.
inferred← citeshttps://doi.org/10.1021/acsestwater.1c00303openalex-snapshot
Assessment of Microalgal-Bacterial Granular Sludge Process for Environmentally Sustainable Municipal Wastewater Treatment
inferred← citeshttps://doi.org/10.1021/acsestwater.5c00660openalex-snapshot
Microbial Communities Shape Chemical Fate during Wastewater Treatment: Implications for Low-Cost Treatment Optimization
inferred← citeshttps://doi.org/10.1021/acsomega.4c02060openalex-snapshot
Efficient Biosynthesis of Salidroside via Artificial in Vivo enhanced UDP-Glucose System Using Cheap Sucrose as Substrate
inferred← citeshttps://doi.org/10.1021/acssynbio.0c00382openalex-snapshot
(Optochemical) Control of Synthetic Microbial Coculture Interactions on a Microcolony Level
inferred← citeshttps://doi.org/10.1021/acssynbio.2c00527openalex-snapshot
Developing Cyanobacterial Quorum Sensing Toolkits: Toward Interspecies Coordination in Mixed Autotroph/Heterotroph Communities
inferred← citeshttps://doi.org/10.1021/acssynbio.5c00265openalex-snapshot
Cellular Economics of Exchanged Metabolites Alter Ratios of Microbial Trading Partners in a Predictable Manner
inferred← citeshttps://doi.org/10.1021/acssynbio.6c00263openalex-snapshot
Complete Utilization of Poly(butylene Adipate- co -terephthalate) Monomers and Production of Polyhydroxybutyrate by a Levulinic Acid-Mediated Microbial Consortium of Pseudomonas putida and Cupriavidus necator
inferred← citeshttps://doi.org/10.1021/acssynbio.9b00110openalex-snapshot
Synthetic, Context-Dependent Microbial Consortium of Predator and Prey
inferred← citeshttps://doi.org/10.1038/ismej.2015.243openalex-snapshot
Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates
inferred← citeshttps://doi.org/10.1038/ismej.2016.141openalex-snapshot
Microbial mutualism dynamics governed by dose-dependent toxicity of cross-fed nutrients
inferred← citeshttps://doi.org/10.1038/ismej.2017.147openalex-snapshot
Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community
inferred← citeshttps://doi.org/10.1038/s41396-018-0095-zopenalex-snapshot
Impact of spatial organization on a novel auxotrophic interaction among soil microbes
inferred← citeshttps://doi.org/10.1038/s41396-020-00737-5openalex-snapshot
Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community
inferred← citeshttps://doi.org/10.1038/s41467-018-07946-9openalex-snapshot
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
inferred← citeshttps://doi.org/10.1038/s41467-019-12027-6openalex-snapshot
Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition
inferred← citeshttps://doi.org/10.1038/s41467-019-12190-wopenalex-snapshot
Development of a longevous two-species biophotovoltaics with constrained electron flow
inferred← citeshttps://doi.org/10.1038/s41467-021-22426-3openalex-snapshot
Non-additive microbial community responses to environmental complexity
inferred← citeshttps://doi.org/10.1038/s41467-021-26647-4openalex-snapshot
Steering ecological-evolutionary dynamics to improve artificial selection of microbial communities
inferred← citeshttps://doi.org/10.1038/s41467-022-32392-zopenalex-snapshot
Dynamic cybergenetic control of bacterial co-culture composition via optogenetic feedback
inferred← citeshttps://doi.org/10.1038/s41467-022-34190-zopenalex-snapshot
Circuit-guided population acclimation of a synthetic microbial consortium for improved biochemical production
inferred← citeshttps://doi.org/10.1038/s41467-023-40777-xopenalex-snapshot
Engineering microbial division of labor for plastic upcycling
inferred← citeshttps://doi.org/10.1038/s41467-023-43455-0openalex-snapshot
Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics
inferred← citeshttps://doi.org/10.1038/s41467-025-60948-2openalex-snapshot
Nitrogen-shaped microbiotas with nutrient competition accelerate early-stage residue decomposition in agricultural soils
inferred← citeshttps://doi.org/10.1038/s41467-025-66804-7openalex-snapshot
Laser-assisted microbial culturomics
inferred← citeshttps://doi.org/10.1038/s41467-026-76689-9openalex-snapshot
SynComs should be rigorously defined, not renamed
inferred← citeshttps://doi.org/10.1038/s41522-020-00170-8openalex-snapshot
Artificial consortium demonstrates emergent properties of enhanced cellulosic-sugar degradation and biofuel synthesis
inferred← citeshttps://doi.org/10.1038/s41522-022-00322-yopenalex-snapshot
Synthetic periphyton as a model system to understand species dynamics in complex microbial freshwater communities
inferred← citeshttps://doi.org/10.1038/s41522-026-01072-xopenalex-snapshot
Functional roles of degraders and non-degraders in anaerobic trophic networks converting lignocellulose into monocarboxylates
inferred← citeshttps://doi.org/10.1038/s41564-019-0572-9openalex-snapshot
Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels
inferred← citeshttps://doi.org/10.1038/s41564-023-01596-4openalex-snapshot
A molecular toolkit of cross-feeding strains for engineering synthetic yeast communities
inferred← citeshttps://doi.org/10.1038/s41565-021-00878-4openalex-snapshot
Bioelectronic control of a microbial community using surface-assembled electrogenetic cells to route signals
inferred← citeshttps://doi.org/10.1038/s41598-017-16614-9openalex-snapshot
The importance of filamentous cyanobacteria in the development of oxygenic photogranules
inferred← citeshttps://doi.org/10.1038/s41598-018-33733-zopenalex-snapshot
Human gut microbe co-cultures have greater potential than monocultures for food waste remediation to commodity chemicals
inferred← citeshttps://doi.org/10.1038/s41893-025-01765-9openalex-snapshot
A programmable microbial assembly line for plastic upcycling
inferred← citeshttps://doi.org/10.1038/s42003-023-04617-4openalex-snapshot
A thermophilic chemolithoautotrophic bacterial consortium suggests a mutual relationship between bacteria in extreme oligotrophic environments
inferred← citeshttps://doi.org/10.1038/s43016-022-00487-xopenalex-snapshot
Synthetic biology for the engineering of complex wine yeast communities
inferred← citeshttps://doi.org/10.1038/s43705-022-00160-1openalex-snapshot
Initial community composition determines the long-term dynamics of a microbial cross-feeding interaction by modulating niche availability
inferred← citeshttps://doi.org/10.1038/s43705-022-00189-2openalex-snapshot
TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome
inferred← citeshttps://doi.org/10.1039/c6ee03705dopenalex-snapshot
A three-species microbial consortium for power generation
inferred← citeshttps://doi.org/10.1039/d0re00084aopenalex-snapshot
Reaction engineering and kinetics of algae conversion to biofuels and chemicals via pyrolysis and hydrothermal liquefaction
inferred← citeshttps://doi.org/10.1042/bst20170242openalex-snapshot
Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia
inferred← citeshttps://doi.org/10.1042/bst20170268openalex-snapshot
Constraint-based modeling in microbial food biotechnology
inferred← citeshttps://doi.org/10.1055/a-2778-9185openalex-snapshot
Algae-Driven Transition from Oil to Renewable Alternatives: Policy for Scale and Sustainability
inferred← citeshttps://doi.org/10.1061/(asce)hz.2153-5515.0000522openalex-snapshot
Biodegradation of Lignin from Pulp and Paper Mill Effluent: Optimization and Toxicity Evaluation
inferred← citeshttps://doi.org/10.1063/5.0115645openalex-snapshot
Engineering living materials by synthetic biology
inferred← citeshttps://doi.org/10.1073/pnas.1906172116openalex-snapshot
Toxicity drives facilitation between 4 bacterial species
inferred← citeshttps://doi.org/10.1073/pnas.2307313120openalex-snapshot
Sparsity of higher-order landscape interactions enables learning and prediction for microbiomes
inferred← citeshttps://doi.org/10.1080/00103624.2024.2391990openalex-snapshot
Untapping the Synergy of Biofertilizers–Organic Amendments: an Opportunity Beyond Chemical Fertilizers for Agricultural Sustainability
inferred← citeshttps://doi.org/10.1080/07388551.2019.1597828openalex-snapshot
Advances in the technologies for studying consortia of bacteria and cyanobacteria/microalgae in wastewaters
inferred← citeshttps://doi.org/10.1080/07388551.2020.1853032openalex-snapshot
Biotechnological basis of microbial consortia for the removal of pesticides from the environment
inferred← citeshttps://doi.org/10.1080/07388551.2022.2118569openalex-snapshot
Applications of synthetic yeast consortia for the production of native and non-native chemicals
inferred← citeshttps://doi.org/10.1080/1040841x.2025.2482658openalex-snapshot
Current knowledge on the dual species interaction and biofilm between Aspergillus and Bacillus : exploiting molecular understanding toward applications
inferred← citeshttps://doi.org/10.1080/19490976.2023.2177486openalex-snapshot
Co-cultivation is a powerful approach to produce a robust functionally designed synthetic consortium as a live biotherapeutic product (LBP)
inferred← citeshttps://doi.org/10.1088/1478-3975/ab0946openalex-snapshot
Phase transitions in mutualistic communities under invasion
inferred← citeshttps://doi.org/10.1089/ind.2024.0032openalex-snapshot
Screening Adaptive Microbial Hydrolytic Enzymes for Cleaner Production in Resource-Limited Settings
inferred← citeshttps://doi.org/10.1093/femsec/fix028openalex-snapshot
Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat
inferred← citeshttps://doi.org/10.1093/femsre/fuae026openalex-snapshot
Assembly of functional microbial ecosystems: from molecular circuits to communities
inferred← citeshttps://doi.org/10.1093/femsre/fuw024openalex-snapshot
Synthetic microbial ecology and the dynamic interplay between microbial genotypes
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