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Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo

https://doi.org/10.1073/pnas.1810062115
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1097-0061(20000630)16:9<857::aid-yea561>3.0.co;2-bopenalex-snapshot
Rapid and reliable protein extraction from yeast
inferredcites →https://doi.org/10.1002/1873-3468.12707openalex-snapshot
Chromatin accessibility and guide sequence secondary structure affect CRISPR ‐Cas9 gene editing efficiency
inferredcites →https://doi.org/10.1002/j.1460-2075.1986.tb04551.xopenalex-snapshot
Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast.
inferredcites →https://doi.org/10.1002/j.1460-2075.1986.tb04552.xopenalex-snapshot
Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.
inferredcites →https://doi.org/10.1002/j.1460-2075.1990.tb08158.xopenalex-snapshot
Intermediates of recombination during mating type switching in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1016/0076-6879(91)94004-vopenalex-snapshot
Getting started with yeast
inferredcites →https://doi.org/10.1016/0076-6879(91)94022-5openalex-snapshot
[19] Targeting, disruption, replacement, and allele rescue: Integrative DNA transformation in yeast
inferredcites →https://doi.org/10.1016/0307-4412(91)90039-bopenalex-snapshot
Methods in Yeast Genetics — A Laboratory Course Manual
inferredcites →https://doi.org/10.1016/j.cell.2009.02.043openalex-snapshot
Mechanisms that Specify Promoter Nucleosome Location and Identity
inferredcites →https://doi.org/10.1016/j.cell.2014.05.010openalex-snapshot
Development and Applications of CRISPR-Cas9 for Genome Engineering
inferredcites →https://doi.org/10.1016/j.cell.2016.10.044openalex-snapshot
CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes
inferredcites →https://doi.org/10.1016/j.molcel.2005.02.017openalex-snapshot
Distinction and Relationship between Elongation Rate and Processivity of RNA Polymerase II In Vivo
inferredcites →https://doi.org/10.1016/j.molcel.2011.03.028openalex-snapshot
Multiple Sequence-Specific Factors Generate the Nucleosome-Depleted Region on CLN2 Promoter
inferredcites →https://doi.org/10.1016/j.molcel.2015.10.002openalex-snapshot
Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast
inferredcites →https://doi.org/10.1016/j.molcel.2018.06.017openalex-snapshot
Systematic Study of Nucleosome-Displacing Factors in Budding Yeast
inferredcites →https://doi.org/10.1016/j.omtn.2017.08.005openalex-snapshot
The Chromatin Structure Differentially Impacts High-Specificity CRISPR-Cas9 Nuclease Strategies
inferredcites →https://doi.org/10.1016/j.tibs.2013.06.009openalex-snapshot
Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure
inferredcites →https://doi.org/10.1016/j.ymeth.2017.04.003openalex-snapshot
Genome editing via delivery of Cas9 ribonucleoprotein
inferredcites →https://doi.org/10.1016/s1046-2023(05)80158-6openalex-snapshot
Overview of manual and automated DNA sequencing by the dideoxy chain termination method
inferredcites →https://doi.org/10.1016/s1097-2765(02)00459-8openalex-snapshot
Opening of Compacted Chromatin by Early Developmental Transcription Factors HNF3 (FoxA) and GATA-4
inferredcites →https://doi.org/10.1021/acs.biochem.5b01108openalex-snapshot
Nucleosomes Inhibit Cas9 Endonuclease Activity in Vitro
inferredcites →https://doi.org/10.1021/acssynbio.5b00299openalex-snapshot
The Impact of Chromatin Dynamics on Cas9-Mediated Genome Editing in Human Cells
inferredcites →https://doi.org/10.1021/ja983267vopenalex-snapshot
Generation of Monospecific Nanomolar Tyrosine Kinase Inhibitors via a Chemical Genetic Approach
inferredcites →https://doi.org/10.1038/38444openalex-snapshot
Crystal structure of the nucleosome core particle at 2.8 Å resolution
inferredcites →https://doi.org/10.1038/90837openalex-snapshot
In vivo site-directed mutagenesis using oligonucleotides
inferredcites →https://doi.org/10.1038/nature13579openalex-snapshot
Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease
inferredcites →https://doi.org/10.1038/nature17946openalex-snapshot
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
inferredcites →https://doi.org/10.1038/nature24644openalex-snapshot
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
inferredcites →https://doi.org/10.1038/nbt.3437openalex-snapshot
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
inferredcites →https://doi.org/10.1038/sj.emboj.7601859openalex-snapshot
Forkhead proteins control the outcome of transcription factor binding by antiactivation
inferredcites →https://doi.org/10.1073/pnas.0810475105openalex-snapshot
Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases
inferredcites →https://doi.org/10.1073/pnas.211195798openalex-snapshot
Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response
inferredcites →https://doi.org/10.1074/jbc.c116.758706openalex-snapshot
Nucleosomes Selectively Inhibit Cas9 Off-target Activity at a Site Located at the Nucleosome Edge
inferredcites →https://doi.org/10.1093/emboj/20.17.4944openalex-snapshot
Increasing the rate of chromatin remodeling and gene activation—a novel role for the histone acetyltransferase Gcn5
inferredcites →https://doi.org/10.1093/genetics/123.4.725openalex-snapshot
The genetic control of direct-repeat recombination in Saccharomyces: the effect of rad52 and rad1 on mitotic recombination at GAL10, a transcriptionally regulated gene.
inferredcites →https://doi.org/10.1093/nar/gku784openalex-snapshot
The yeast PHO5 promoter: from single locus to systems biology of a paradigm for gene regulation through chromatin
inferredcites →https://doi.org/10.1093/nar/gkw524openalex-snapshot
Probing the impact of chromatin conformation on genome editing tools
inferredcites →https://doi.org/10.1101/gad.824700openalex-snapshot
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
inferredcites →https://doi.org/10.1101/gad.921601openalex-snapshot
The Swi5 activator recruits the Mediator complex to theHOpromoter without RNA polymerase II
inferredcites →https://doi.org/10.1126/science.1258096openalex-snapshot
The new frontier of genome engineering with CRISPR-Cas9
inferredcites →https://doi.org/10.1126/science.aaf8729openalex-snapshot
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
inferredcites →https://doi.org/10.1126/scitranslmed.aaf9336openalex-snapshot
Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells
inferredcites →https://doi.org/10.1128/mcb.12.2.563openalex-snapshot
Characterization of Double-Strand Break-Induced Recombination: Homology Requirements and Single-Stranded DNA Formation
inferredcites →https://doi.org/10.1128/mcb.17.5.2669openalex-snapshot
Long-Range Interactions at the HO Promoter
inferredcites →https://doi.org/10.1128/mcb.24.14.6419-6429.2004openalex-snapshot
TATA-Binding Protein Mutants That Are Lethal in the Absence of the Nhp6 High-Mobility-Group Protein
inferredcites →https://doi.org/10.1146/annurev-biochem-060713-035418openalex-snapshot
Genome Engineering with Targetable Nucleases
inferredcites →https://doi.org/10.1186/s13059-016-0900-9openalex-snapshot
Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design
inferredcites →https://doi.org/10.1534/genetics.105.052829openalex-snapshot
Efficient Gene Targeting in Drosophila With Zinc-Finger Nucleases
inferredcites →https://doi.org/10.1534/genetics.115.183715openalex-snapshot
Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter inSaccharomyces cerevisiae
inferredcites →https://doi.org/10.7554/elife.12677openalex-snapshot
Nucleosomes impede Cas9 access to DNA in vivo and in vitro
inferredcites →https://doi.org/10.7554/elife.13450openalex-snapshot
Nucleosome breathing and remodeling constrain CRISPR-Cas9 function
inferredcites →https://doi.org/10.7554/elife.14846openalex-snapshot
Compensation for PKMζ in long-term potentiation and spatial long-term memory in mutant mice

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Marker-Free CRISPR-Cas9 Based Genetic Engineering of the Phytopathogenic Fungus, Penicillium expansum
inferred← citeshttps://doi.org/10.2139/ssrn.4076345openalex-extracted
CRISPR-Cas9 Expressed in Stably Transduced Cell Lines Promotes Recombination and Selects for Herpes Simplex Virus Recombinants between Co-Transfected DNAs
inferred← citeshttps://doi.org/10.1002/1873-3468.13719openalex-snapshot
Increasing the targeting scope and efficiency of base editing with Proxy‐BE strategy
inferred← citeshttps://doi.org/10.1002/9781119671404.ch20openalex-snapshot
Specificity of CRISPR‐Cas9 Gene Editing
inferred← citeshttps://doi.org/10.1002/advs.201902312openalex-snapshot
CRISPR/Cas Systems in Genome Editing: Methodologies and Tools for sgRNA Design, Off‐Target Evaluation, and Strategies to Mitigate Off‐Target Effects
inferred← citeshttps://doi.org/10.1002/biot.202100673openalex-snapshot
Precision genome editing in plants using gene targeting and prime editing: existing and emerging strategies
inferred← citeshttps://doi.org/10.1002/biot.70255openalex-snapshot
Harnessing Deep Learning Models for Guide RNA Optimization and Off‐Target Prediction in CRISPR Systems
inferred← citeshttps://doi.org/10.1002/pld3.507openalex-snapshot
Knockout of floral and meiosis genes using CRISPR/Cas9 produces male‐sterility in Eucalyptus without impacts on vegetative growth
inferred← citeshttps://doi.org/10.1002/stem.3110openalex-snapshot
Inherited cardiac diseases, pluripotent stem cells, and genome editing combined—the past, present, and future
inferred← citeshttps://doi.org/10.1002/yea.3440openalex-snapshot
A new inducible CRISPR‐Cas9 system useful for genome editing and study of double‐strand break repair in Candida glabrata
inferred← citeshttps://doi.org/10.1002/yea.3976openalex-snapshot
In vivo CRISPR‐Cas9 expression in Candida glabrata, Candida bracarensis, and Candida nivariensis: A versatile tool to study chromosomal break repair
inferred← citeshttps://doi.org/10.1007/s00018-019-03021-8openalex-snapshot
Orthologous CRISPR/Cas9 systems for specific and efficient degradation of covalently closed circular DNA of hepatitis B virus
inferred← citeshttps://doi.org/10.1007/s00253-023-12469-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00253-024-13056-yopenalex-snapshot
Engineering Cas9: next generation of genomic editors
inferred← citeshttps://doi.org/10.1007/s00294-021-01182-3openalex-snapshot
Lessons from the Nakaseomyces: mating-type switching, DSB repair and evolution of Ho
inferred← citeshttps://doi.org/10.1007/s00439-026-02863-0openalex-snapshot
CRISPR/Cas9-based repair of a heterozygous HNF1A mutation in patient-derived hiPSCs
inferred← citeshttps://doi.org/10.1007/s11248-019-00125-6openalex-snapshot
Production of a mutant of large-scale loach Paramisgurnus dabryanus with skin pigmentation loss by genome editing with CRISPR/Cas9 system
inferred← citeshttps://doi.org/10.1007/s11427-020-1744-6openalex-snapshot
Enhanced genome editing to ameliorate a genetic metabolic liver disease through co-delivery of adeno-associated virus receptor
inferred← citeshttps://doi.org/10.1007/s13311-019-00712-9openalex-snapshot
Targeted Oligonucleotides for Treating Neurodegenerative Tandem Repeat Diseases
inferred← citeshttps://doi.org/10.1007/s13562-023-00860-2openalex-snapshot
Strategies to improve genome editing efficiency in crop plants
inferred← citeshttps://doi.org/10.1007/s42994-024-00139-7openalex-snapshot
Optimized protoplast isolation and transfection with a breakpoint: accelerating Cas9/sgRNA cleavage efficiency validation in monocot and dicot
inferred← citeshttps://doi.org/10.1016/bs.pmbts.2020.12.010openalex-snapshot
Application of CRISPR-Cas systems in neuroscience
inferred← citeshttps://doi.org/10.1016/j.algal.2024.103796openalex-snapshot
Comparison of CRISPR/Cas9 and Cas12a for gene editing in Chlamydomonas reinhardtii
inferred← citeshttps://doi.org/10.1016/j.bbrep.2026.102495openalex-snapshot
Enhancement of prime editing by recruiting engineered or evolved components and implementing novel strategies
inferred← citeshttps://doi.org/10.1016/j.biocel.2020.105790openalex-snapshot
Increasing CRISPR/Cas9-mediated homology-directed DNA repair by histone deacetylase inhibitors
inferred← citeshttps://doi.org/10.1016/j.biopha.2021.111917openalex-snapshot
CRISPR: History and perspectives to the future
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2021.107737openalex-snapshot
Paving the way towards precise and safe CRISPR genome editing
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2024.108382openalex-snapshot
The type V effectors for CRISPR/Cas-mediated genome engineering in plants
inferred← citeshttps://doi.org/10.1016/j.cell.2021.05.029openalex-snapshot
Reading the chromatinized genome
inferred← citeshttps://doi.org/10.1016/j.cell.2024.03.020openalex-snapshot
Chromatin context-dependent regulation and epigenetic manipulation of prime editing
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.113339openalex-snapshot
Targeting the non-coding genome and temozolomide signature enables CRISPR-mediated glioma oncolysis
inferred← citeshttps://doi.org/10.1016/j.crviro.2022.100023openalex-snapshot
CRISPR-Cas9 expressed in stably transduced cell lines promotes recombination and selects for herpes simplex virus recombinants
inferred← citeshttps://doi.org/10.1016/j.csbj.2019.11.006openalex-snapshot
Computational approaches for effective CRISPR guide RNA design and evaluation
inferred← citeshttps://doi.org/10.1016/j.ejphar.2019.04.042openalex-snapshot
Targeted deletion of BCL11A gene by CRISPR-Cas9 system for fetal hemoglobin reactivation: A promising approach for gene therapy of beta thalassemia disease
inferred← citeshttps://doi.org/10.1016/j.enzmictec.2020.109621openalex-snapshot
Construction of wild-type Yarrowia lipolytica IMUFRJ 50682 auxotrophic mutants using dual CRISPR/Cas9 strategy for novel biotechnological approaches
inferred← citeshttps://doi.org/10.1016/j.enzmictec.2022.110056openalex-snapshot
Development and expansion of the CRISPR/Cas9 toolboxes for powerful genome engineering in yeast
inferred← citeshttps://doi.org/10.1016/j.fgb.2022.103689openalex-snapshot
Marker-free CRISPR-Cas9 based genetic engineering of the phytopathogenic fungus, Penicillium expansum
inferred← citeshttps://doi.org/10.1016/j.ggedit.2021.100002openalex-snapshot
A short, idiosyncratic history of genome editing
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.02.006openalex-snapshot
Computational Tools and Resources for CRISPR/Cas Genome Editing
inferred← citeshttps://doi.org/10.1016/j.hpj.2019.04.001openalex-snapshot
Efficient BoPDS Gene Editing in Cabbage by the CRISPR/Cas9 System
inferred← citeshttps://doi.org/10.1016/j.jconrel.2023.02.008openalex-snapshot
Lipid nanoparticle-based ribonucleoprotein delivery for in vivo genome editing
inferred← citeshttps://doi.org/10.1016/j.jgg.2020.07.010openalex-snapshot
Improving the Cpf1-mediated base editing system by combining dCas9/dead sgRNA with human APOBEC3A variants
inferred← citeshttps://doi.org/10.1016/j.jia.2026.07.004openalex-snapshot
Locus-specific histone crotonylation enhances the efficiency and precision of Prime Editing in bovine cells
inferred← citeshttps://doi.org/10.1016/j.jmb.2024.168550openalex-snapshot
Deciphering the Substrate Specificity Reveals that CRISPR-Cas12a Is a Bifunctional Enzyme with Both Endo- and Exonuclease Activities
inferred← citeshttps://doi.org/10.1016/j.molcel.2020.06.014openalex-snapshot
The Histone Chaperone FACT Induces Cas9 Multi-turnover Behavior and Modifies Genome Manipulation in Human Cells
inferred← citeshttps://doi.org/10.1016/j.molcel.2021.02.011openalex-snapshot
Genome oligopaint via local denaturation fluorescence in situ hybridization
inferred← citeshttps://doi.org/10.1016/j.omtn.2020.03.004openalex-snapshot
Development of a Simple and Quick Method to Assess Base Editing in Human Cells
inferred← citeshttps://doi.org/10.1016/j.tibtech.2019.09.005openalex-snapshot
Directed Evolution of CRISPR-Cas9 Base Editors
inferred← citeshttps://doi.org/10.1016/j.xgen.2022.100119openalex-snapshot
Genome-wide functional perturbation of human microsatellite repeats using engineered zinc finger transcription factors
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.04.024openalex-snapshot
Evaluation of off-targets predicted by sgRNA design tools
inferred← citeshttps://doi.org/10.1016/j.ymben.2025.02.004openalex-snapshot
Discovery, characterization, and application of chromosomal integration sites for stable heterologous gene expression in Rhodotorula toruloides
inferred← citeshttps://doi.org/10.1016/j.ymthe.2020.04.009openalex-snapshot
BEON: A Functional Fluorescence Reporter for Quantification and Enrichment of Adenine Base-Editing Activity
inferred← citeshttps://doi.org/10.1016/j.ymthe.2022.10.010openalex-snapshot
First-in-human in vivo genome editing via AAV-zinc-finger nucleases for mucopolysaccharidosis I/II and hemophilia B
inferred← citeshttps://doi.org/10.1016/j.ymthe.2023.03.007openalex-snapshot
An optimized SpCas9 high-fidelity variant for direct protein delivery
inferred← citeshttps://doi.org/10.1016/j.ymthe.2024.09.032openalex-snapshot
AAV vector-derived elements integrate into Cas9-generated double-strand breaks and disrupt gene transcription
inferred← citeshttps://doi.org/10.1021/acs.biochem.2c00379openalex-snapshot
Transposons and CRISPR: Rewiring Gene Editing
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c00694openalex-snapshot
Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones
inferred← citeshttps://doi.org/10.1021/acssynbio.4c00099openalex-snapshot
Impact of Chromatin Organization and Epigenetics on CRISPR-Cas and TALEN Genome Editing
inferred← citeshttps://doi.org/10.1021/acssynbio.4c00542openalex-snapshot
Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity
inferred← citeshttps://doi.org/10.1038/s41421-023-00624-1openalex-snapshot
Deep learning models incorporating endogenous factors beyond DNA sequences improve the prediction accuracy of base editing outcomes
inferred← citeshttps://doi.org/10.1038/s41434-025-00557-2openalex-snapshot
Gene editing for Spinocerebellar ataxia type 3 taking advantage of the human ATXN3L paralog as replacement gene
inferred← citeshttps://doi.org/10.1038/s41467-019-08867-xopenalex-snapshot
Diversifying the structure of zinc finger nucleases for high-precision genome editing
inferred← citeshttps://doi.org/10.1038/s41467-019-09551-wopenalex-snapshot
Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency
inferred← citeshttps://doi.org/10.1038/s41467-020-20672-5openalex-snapshot
TALEN outperforms Cas9 in editing heterochromatin target sites
inferred← citeshttps://doi.org/10.1038/s41467-022-28540-0openalex-snapshot
Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica
inferred← citeshttps://doi.org/10.1038/s41467-024-54629-9openalex-snapshot
Engineered transcription-associated Cas9 targeting in eukaryotic cells
inferred← citeshttps://doi.org/10.1038/s41467-024-54768-zopenalex-snapshot
Structural insights into how Cas9 targets nucleosomes
inferred← citeshttps://doi.org/10.1038/s41467-026-75767-2openalex-snapshot
Accurate, sensitive, and efficient chromatin accessibility quantification at target loci using UNIChro-seq
inferred← citeshttps://doi.org/10.1038/s41477-024-01701-3openalex-snapshot
Cleave and Rescue gamete killers create conditions for gene drive in plants
inferred← citeshttps://doi.org/10.1038/s41551-025-01535-0openalex-snapshot
High-throughput evaluation of in vitro CRISPR activities enables optimized large-scale multiplex enrichment of rare variants
inferred← citeshttps://doi.org/10.1038/s41556-022-00975-zopenalex-snapshot
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites
inferred← citeshttps://doi.org/10.1038/s41573-020-0083-7openalex-snapshot
Modulating gene regulation to treat genetic disorders
inferred← citeshttps://doi.org/10.1038/s41587-020-0555-7openalex-snapshot
CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity
inferred← citeshttps://doi.org/10.1038/s41589-025-01867-7openalex-snapshot
TOPO-seq reveals DNA topology-induced off-target activity by Cas9 and base editors
inferred← citeshttps://doi.org/10.1038/s41592-024-02333-3openalex-snapshot
CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells
inferred← citeshttps://doi.org/10.1038/s41596-021-00677-0openalex-snapshot
CRISPR somatic genome engineering and cancer modeling in the mouse pancreas and liver
inferred← citeshttps://doi.org/10.1038/s41598-020-69259-6openalex-snapshot
The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps
inferred← citeshttps://doi.org/10.1038/s41598-020-70804-6openalex-snapshot
Genome editing with the donor plasmid equipped with synthetic crRNA-target sequence
inferred← citeshttps://doi.org/10.1038/s41598-022-15944-7openalex-snapshot
Different transcriptional responses by the CRISPRa system in distinct types of heterochromatin in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1038/s41598-024-55088-4openalex-snapshot
Comparison of Cas12a and Cas9-mediated mutagenesis in tomato cells
inferred← citeshttps://doi.org/10.1038/s42003-022-03004-9openalex-snapshot
Demonstration of targeted crossovers in hybrid maize using CRISPR technology
inferred← citeshttps://doi.org/10.1039/c8ra10017aopenalex-snapshot
Target DNA mutagenesis-based fluorescence assessment of off-target activity of the CRISPR-Cas9 system
inferred← citeshttps://doi.org/10.1042/bst20220873openalex-snapshot
Frankenstein Cas9: engineering improved gene editing systems
inferred← citeshttps://doi.org/10.1073/pnas.1813829115openalex-snapshot
Profile of Dana Carroll
inferred← citeshttps://doi.org/10.1073/pnas.2204259119openalex-snapshot
Decorating chromatin for enhanced genome editing using CRISPR-Cas9
inferred← citeshttps://doi.org/10.1074/jbc.ra120.012933openalex-snapshot
CRISPR-Cas12a has widespread off-target and dsDNA-nicking effects
inferred← citeshttps://doi.org/10.1089/crispr.2018.0036openalex-snapshot
Improving CRISPR-Cas9 Genome Editing Efficiency by Fusion with Chromatin-Modulating Peptides
inferred← citeshttps://doi.org/10.1089/crispr.2020.0103openalex-snapshot
A Living Organism in your CRISPR Toolbox: Caenorhabditis elegans Is a Rapid and Efficient Model for Developing CRISPR-Cas Technologies
inferred← citeshttps://doi.org/10.1089/crispr.2022.0001openalex-snapshot
Increasing Genome Editing Efficiency of Cas9 Nucleases by the Simultaneous Use of Transcriptional Activators and Histone Acetyltransferase Activator
inferred← citeshttps://doi.org/10.1089/crispr.2024.0050openalex-snapshot
Monitoring the Land and Sea: Enhancing Efficiency Through CRISPR-Cas Driven Depletion and Enrichment of Environmental DNA
inferred← citeshttps://doi.org/10.1093/bib/bbad333openalex-snapshot
Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac668openalex-snapshot
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression
inferred← citeshttps://doi.org/10.1093/femsle/fnz080openalex-snapshot
Limitations of transcriptome-based prediction of pathogenicity genes in the plant pathogen Leptosphaeria maculans
inferred← citeshttps://doi.org/10.1093/jxb/erae147openalex-snapshot
How to use CRISPR/Cas9 in plants: from target site selection to DNA repair
inferred← citeshttps://doi.org/10.1093/nar/gkaa231openalex-snapshot
Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes
inferred← citeshttps://doi.org/10.1093/nar/gkaa833openalex-snapshot
Efficient DNA double-strand break formation at single or multiple defined sites in the Saccharomyces cerevisiae genome
inferred← citeshttps://doi.org/10.1093/nar/gkaa885openalex-snapshot
crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays
inferred← citeshttps://doi.org/10.1093/nar/gkaa975openalex-snapshot
INDEL detection, the ‘Achilles heel’ of precise genome editing: a survey of methods for accurate profiling of gene editing induced indels
inferred← citeshttps://doi.org/10.1093/nar/gkab052openalex-snapshot
Small-molecule inhibitors of histone deacetylase improve CRISPR-based adenine base editing
inferred← citeshttps://doi.org/10.1093/nar/gkab163openalex-snapshot
Systematic in vitro specificity profiling reveals nicking defects in natural and engineered CRISPR–Cas9 variants
inferred← citeshttps://doi.org/10.1093/nar/gkad021openalex-snapshot
The impact of nucleosome structure on CRISPR/Cas9 fidelity
inferred← citeshttps://doi.org/10.1093/nar/gkad1076openalex-snapshot
Epigenetic profiles guide improved CRISPR/Cas9-mediated gene knockout in human T cells
inferred← citeshttps://doi.org/10.1093/nar/gkad736openalex-snapshot
Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering
inferred← citeshttps://doi.org/10.1093/nar/gkae570openalex-snapshot
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing
inferred← citeshttps://doi.org/10.1093/nar/gkag548openalex-snapshot
Empirical evaluation of all unique Cas9 protospacers in E. coli reveal widespread functionality and rules for gRNA design
inferred← citeshttps://doi.org/10.1093/nar/gkz1136openalex-snapshot
Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing
inferred← citeshttps://doi.org/10.1093/nar/gkz1214openalex-snapshot
Artificial escape from XCI by DNA methylation editing of the CDKL5 gene
inferred← citeshttps://doi.org/10.1093/nar/gkz750openalex-snapshot
Training-free measures based on algorithmic probability identify high nucleosome occupancy in DNA sequences
inferred← citeshttps://doi.org/10.1093/narmme/ugae013openalex-snapshot
Cas9 nickase-mediated contractions of CAG/CTG repeats are transcription-dependent and replication-independent
inferred← citeshttps://doi.org/10.1093/plphys/kiac285openalex-snapshot
Epigenetic features drastically impact CRISPR–Cas9 efficacy in plants
inferred← citeshttps://doi.org/10.1093/plphys/kiac431openalex-snapshot
Insights into the molecular mechanisms of CRISPR/Cas9-mediated gene targeting at multiple loci in Arabidopsis
inferred← citeshttps://doi.org/10.1101/2020.05.12.091991openalex-snapshot
High-throughput in vitro specificity profiling of natural and high-fidelity CRISPR-Cas9 variants
inferred← citeshttps://doi.org/10.1101/2020.07.09.196253openalex-snapshot
2-Locus Cleave and Rescue selfish elements harness a recombination rate-dependent generational clock for self limiting gene drive
inferred← citeshttps://doi.org/10.1101/2021.10.25.465699openalex-snapshot
Alternative strategy to induce CRISPR-mediated genetic changes in hematopoietic cells
inferred← citeshttps://doi.org/10.1101/2025.05.23.651106openalex-snapshot
When good guides go bad: empirical evaluation of all unique Cas9 protospacers in E. coli reveal widespread functionality and rules for gRNA design
inferred← citeshttps://doi.org/10.1101/2025.10.08.681228openalex-snapshot
DeepEmbCas9: Cas9 coevolution and sgRNA structural information for CRISPR-Cas9 cleavage activity prediction
inferred← citeshttps://doi.org/10.1101/480145openalex-snapshot
Base editing generates substantial off-target single nucleotide variants
inferred← citeshttps://doi.org/10.1101/657791openalex-snapshot
Pervasive off-target and double-stranded DNA nicking by CRISPR-Cas12a
inferred← citeshttps://doi.org/10.1101/797746openalex-snapshot
In Vivo Study of Key Transcription Factors in Muscle Satellite Cells by CRISPR/Cas9/AAV9-sgRNA Mediated Genome Editing
inferred← citeshttps://doi.org/10.1111/1751-7915.13780openalex-snapshot
A plasmid toolset for CRISPR‐mediated genome editing and CRISPRi gene regulation in Escherichia coli
inferred← citeshttps://doi.org/10.1111/nph.18212openalex-snapshot
DNA methylation can alter CRISPR/Cas9 editing frequency and DNA repair outcome in a target‐specific manner
inferred← citeshttps://doi.org/10.1111/nyas.14675openalex-snapshot
Plant genome engineering from lab to field—a Keystone Symposia report
inferred← citeshttps://doi.org/10.1111/pbi.13169openalex-snapshot
Efficient TALEN ‐mediated gene editing in wheat
inferred← citeshttps://doi.org/10.1111/pbi.14188openalex-snapshot
Prime editing: Mechanism insight and recent applications in plants
inferred← citeshttps://doi.org/10.1111/sji.12862openalex-snapshot
A simple and efficient workflow for generation of knock‐in mutations in Jurkat T cells using CRISPR/Cas9
inferred← citeshttps://doi.org/10.1126/sciadv.aaw9807openalex-snapshot
The post-PAM interaction of RNA-guided spCas9 with DNA dictates its target binding and dissociation
inferred← citeshttps://doi.org/10.1126/sciadv.abd6030openalex-snapshot
Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin
inferred← citeshttps://doi.org/10.1126/science.aav9023openalex-snapshot
Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq
inferred← citeshttps://doi.org/10.1134/s0026893320010069openalex-snapshot
Design of Guide RNA for CRISPR/Cas Plant Genome Editing
inferred← citeshttps://doi.org/10.1134/s0026893322060164openalex-snapshot
A Test System for Assessment of the Activity of Mutant Cas9 Variants in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.1146/annurev-bioeng-122019-121602openalex-snapshot
Integrating Biomaterials and Genome Editing Approaches to Advance Biomedical Science
inferred← citeshttps://doi.org/10.1177/10430342261442511openalex-snapshot
AAV-Mediated Base Editing for Correction of RSPH4A Mutations in Primary Ciliary Dyskinesia: A Proof-of-Concept Study
inferred← citeshttps://doi.org/10.1186/s12859-019-3151-4openalex-snapshot
Prediction of sgRNA on-target activity in bacteria by deep learning
inferred← citeshttps://doi.org/10.1186/s12864-025-11775-8openalex-snapshot
CRISPRware: a software package for contextual gRNA library design
inferred← citeshttps://doi.org/10.1186/s12915-024-01810-7openalex-snapshot
Application of multiple sgRNAs boosts efficiency of CRISPR/Cas9-mediated gene targeting in Arabidopsis
inferred← citeshttps://doi.org/10.1186/s12929-025-01197-9openalex-snapshot
Screening strategy to identify Cas9 variants with higher HDR activity based on diphtheria toxin
inferred← citeshttps://doi.org/10.1186/s13059-019-1762-8openalex-snapshot
Modulating chromatin accessibility by transactivation and targeting proximal dsgRNAs enhances Cas9 editing efficiency in vivo
inferred← citeshttps://doi.org/10.1186/s13059-024-03215-9openalex-snapshot
Eukaryotic-driven directed evolution of Cas9 nucleases
inferred← citeshttps://doi.org/10.1186/s13059-025-03640-4openalex-snapshot
Engineering novel CRISPRi repressors for highly efficient mammalian gene regulation
inferred← citeshttps://doi.org/10.1186/s13072-019-0275-8openalex-snapshot
Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner
inferred← citeshttps://doi.org/10.1186/s13072-025-00573-xopenalex-snapshot
Impact of chromatin on HIV-1 latency: a multi-dimensional perspective
inferred← citeshttps://doi.org/10.1186/s13104-019-4207-2openalex-snapshot
Mutagenesis of seed storage protein genes in Soybean using CRISPR/Cas9
inferred← citeshttps://doi.org/10.1186/s40694-018-0064-3openalex-snapshot
The CRISPR revolution in fungal biology and biotechnology, and beyond
inferred← citeshttps://doi.org/10.1371/journal.pbio.2005595openalex-snapshot
Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001478openalex-snapshot
Meiotic Cas9 expression mediates gene conversion in the male and female mouse germline
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009385openalex-snapshot
Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene drive
inferred← citeshttps://doi.org/10.1371/journal.pone.0216515openalex-snapshot
HIV chromatin is a preferred target for drugs that bind in the DNA minor groove
inferred← citeshttps://doi.org/10.1371/journal.pone.0262299openalex-snapshot
In silico analysis of potential off-target sites to gene editing for Mucopolysaccharidosis type I using the CRISPR/Cas9 system: Implications for population-specific treatments
inferred← citeshttps://doi.org/10.1371/journal.pone.0318295openalex-snapshot
A universal method for the purification of C2H2 zinc finger arrays
inferred← citeshttps://doi.org/10.1523/eneuro.0419-19.2020openalex-snapshot
Genetically Engineering the Nervous System with CRISPR-Cas
inferred← citeshttps://doi.org/10.15252/embr.201949431openalex-snapshot
The microRNA/TET3/REST axis is required for olfactory globose basal cell proliferation and male behavior
inferred← citeshttps://doi.org/10.1534/g3.120.401526openalex-snapshot
Precise Replacement of Saccharomyces cerevisiae Proteasome Genes with Human Orthologs by an Integrative Targeting Method
inferred← citeshttps://doi.org/10.17912/micropub.biology.000241openalex-snapshot
The mir-35-42 binding site in the nhl-2 3’UTR is dispensable for development and fecundity
inferred← citeshttps://doi.org/10.17912/micropub.biology.000622openalex-snapshot
A simple strategy for addition of degron tags to endogenous genes harboring prior insertions of fluorescent protein.
inferred← citeshttps://doi.org/10.2174/1574893616666210708150439openalex-snapshot
CRISPR/ Cas9 Off-targets: Computational Analysis of Causes, Prediction, Detection, and Overcoming Strategies
inferred← citeshttps://doi.org/10.21769/bioprotoc.3748openalex-snapshot
Screening Method for CRISPR/Cas9 Inhibition of a Human DNA Virus: Herpes Simplex Virus
inferred← citeshttps://doi.org/10.24108/preprints-3113548openalex-snapshot
ЦИАНОКОБАЛАМИН-СВЯЗЫВАЮЩИЙ БЕЛОК ТЕРМОФИЛЬНОГО МИКРООРГАНИЗМА
inferred← citeshttps://doi.org/10.31857/s0026898420010061openalex-snapshot
Дизайн РНК-гидов для CRISPR/Cas редактирования геномов растений
inferred← citeshttps://doi.org/10.32942/x2gp7hopenalex-snapshot
Enhancing biodiversity monitoring efficiency through CRISPR-driven depletion and enrichment of aquatic environmental DNA
inferred← citeshttps://doi.org/10.33612/diss.183126910openalex-snapshot
Modulating the activity of CRISPR/Cas9 genome editing by small molecules
inferred← citeshttps://doi.org/10.3389/fbioe.2022.924914openalex-snapshot
Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.3389/fbioe.2024.1327172openalex-snapshot
HyCas9-12aGEP: an efficient genome editing platform for Corynebacterium glutamicum
inferred← citeshttps://doi.org/10.3389/fcell.2021.718466openalex-snapshot
The Off-Targets of Clustered Regularly Interspaced Short Palindromic Repeats Gene Editing
inferred← citeshttps://doi.org/10.3389/fgeed.2023.1265103openalex-snapshot
Diversity of transgene integration and gene-editing events in wheat (Triticum aestivum L.) transgenic plants generated using Agrobacterium-mediated transformation
inferred← citeshttps://doi.org/10.3389/fgeed.2026.1759382openalex-snapshot
Evaluating high-fidelity CRISPR-Cas nucleases in nucleosomal contexts using a quantitative framework
inferred← citeshttps://doi.org/10.3389/fgene.2023.1222112openalex-snapshot
Chromatin structure and context-dependent sequence features control prime editing efficiency
inferred← citeshttps://doi.org/10.3389/fmolb.2020.595474openalex-snapshot
Homology-Directed Repair in Zebrafish: Witchcraft and Wizardry?
inferred← citeshttps://doi.org/10.3389/fmolb.2022.1070489openalex-snapshot
Nucleosomes and their complexes in the cryoEM era: Trends and limitations
inferred← citeshttps://doi.org/10.3389/fpls.2025.1549136openalex-snapshot
Unlocking male sterility in horticultural crops through gene editing technology for precision breeding applications: presentation of a case study in tomato
inferred← citeshttps://doi.org/10.3390/cells10061299openalex-snapshot
Genome Editing to Generate Sake Yeast Strains with Eight Mutations That Confer Excellent Brewing Characteristics
inferred← citeshttps://doi.org/10.3390/cells9051288openalex-snapshot
Computational Tools and Resources Supporting CRISPR-Cas Experiments
inferred← citeshttps://doi.org/10.3390/epigenomes5030017openalex-snapshot
Deciphering Plant Chromatin Regulation via CRISPR/dCas9-Based Epigenome Engineering
inferred← citeshttps://doi.org/10.3390/ijms22157817openalex-snapshot
TSA Promotes CRISPR/Cas9 Editing Efficiency and Expression of Cell Division-Related Genes from Plant Protoplasts
inferred← citeshttps://doi.org/10.3390/ijms24054416openalex-snapshot
Application of Nicotinamide to Culture Medium Improves the Efficiency of Genome Editing in Hexaploid Wheat
inferred← citeshttps://doi.org/10.3390/ijms25010444openalex-snapshot
Increasing the Activity of the High-Fidelity SpyCas9 Form in Yeast by Directed Mutagenesis of the PAM-Interacting Domain
inferred← citeshttps://doi.org/10.3390/ijms262311391openalex-snapshot
The Potential of NGTs to Overcome Constraints in Plant Breeding and Their Regulatory Implications
inferred← citeshttps://doi.org/10.3390/ijms27188104openalex-snapshot
3D Genome Engineering Using CRISPR/dCas Systems
inferred← citeshttps://doi.org/10.3390/microorganisms11041040openalex-snapshot
Overcoming the Limitations of CRISPR-Cas9 Systems in Saccharomyces cerevisiae: Off-Target Effects, Epigenome, and Mitochondrial Editing
inferred← citeshttps://doi.org/10.3390/v15112171openalex-snapshot
HIV-1 Remission: Accelerating the Path to Permanent HIV-1 Silencing
inferred← citeshttps://doi.org/10.3390/v18030354openalex-snapshot
Breaking into HIV-1’s Epigenetic Vault: Cure Strategies to Eliminate the Viral Reservoir
inferred← citeshttps://doi.org/10.3410/f.737033315.793579898openalex-snapshot
Faculty Opinions recommendation of Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing.
inferred← citeshttps://doi.org/10.4236/jbm.2020.811018openalex-snapshot
Development of Genetic Engineering Tools for p75ngfr Methylation and Expression Modulation
inferred← citeshttps://doi.org/10.47743/pesd2023171019openalex-snapshot
Modeling the Impact of Citizens' Social Responsibility on Sustainable Development Based on the Modifying Role of the COVID-19 Pandemic
inferred← citeshttps://doi.org/10.4995/thesis/10251/181891openalex-snapshot
Investigación de la Leucemia Mieloide Aguda mediante el desarrollo de modelos in vitro e in vivo
inferred← citeshttps://doi.org/10.6084/m9.figshare.25017788openalex-snapshot
Additional file 1 of Application of multiple sgRNAs boosts efficiency of CRISPR/Cas9-mediated gene targeting in Arabidopsis
inferred← citeshttps://doi.org/10.6084/m9.figshare.25017975openalex-snapshot
Additional file 2 of Application of multiple sgRNAs boosts efficiency of CRISPR/Cas9-mediated gene targeting in Arabidopsis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668953openalex-snapshot
Additional file 3 of Application of multiple sgRNAs boosts efficiency of CRISPR/Cas9-mediated gene targeting in Arabidopsis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668956openalex-snapshot
Additional file 4 of Application of multiple sgRNAs boosts efficiency of CRISPR/Cas9-mediated gene targeting in Arabidopsis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26697428openalex-snapshot
Additional file 1 of Eukaryotic-driven directed evolution of Cas9 nucleases
inferred← citeshttps://doi.org/10.6084/m9.figshare.26697431openalex-snapshot
Additional file 2 of Eukaryotic-driven directed evolution of Cas9 nucleases
inferred← citeshttps://doi.org/10.6084/m9.figshare.26697434openalex-snapshot
Additional file 3 of Eukaryotic-driven directed evolution of Cas9 nucleases
inferred← citeshttps://doi.org/10.64898/2026.02.06.703857openalex-snapshot
Regenerative base editing enables deep lineage recording
inferred← citeshttps://doi.org/10.70675/de2db5b0zc42az4172z99d6zcd2c4e2c37b1openalex-snapshot
Etude sur le changement de type sexuel et les cassures chromosomiques chez Candida glabrata
inferred← citeshttps://doi.org/10.7150/ijbs.37152openalex-snapshot
Evaluation of the effects of sequence length and microsatellite instability on single-guide RNA activity and specificity
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