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Selectionism and Neutralism in Molecular Evolution

https://doi.org/10.1093/molbev/msi242
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Extent of Protein Polymorphism and the Neutral Mutation Theory
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Mathematical Topics in Population Genetics
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Genetic Loads and the Cost of Natural Selection
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Evolutionary Dynamics of Genetic Diversity
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Genetic Polymorphism and Neomutationism
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The Notion of the Cambrian Pananimalia Genome and a Genomic Difference that Separated Vertebrates from Invertebrates
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Evolution by Gene Duplication
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Towards a theory of evolutionary adaptation
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High divergence of reproductive tract proteins and their association with postzygotic reproductive isolation in Drosophila melanogaster and Drosophila virilis group species
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The structure of cytochromec and the rates of molecular evolution
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Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
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Unbiased estimation of the rates of synonymous and nonsynonymous substitution
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The cost of natural selection
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Rapid Evolution of a Homeodomain: Evidence for Positive Selection
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Phylogenies of Developmentally Important Proteins Do Not Support the Hypothesis of Two Rounds of Genome Duplication Early in Vertebrate History
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Shedding Genomic Ballast: Extensive Parallel Loss of Ancestral Gene Families in Animals
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New Methods for Detecting Positive Selection at Single Amino Acid Sites
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A comparison of the ribosomal DNA's of Xenopus laevis and Xenopus mulleri: the evolution of tandem genes
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Concepts of substitutional load in finite populations
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The accumulation of deleterious genes in a population—Muller's Ratchet
inferredcites →https://doi.org/10.1016/0040-5809(82)90045-4openalex-snapshot
Sexual recombination under the joint effects of mutation, selection, and random sampling drift
inferredcites →https://doi.org/10.1016/0092-8674(80)90641-8openalex-snapshot
The evolution of genes: the chicken preproinsulin gene
inferredcites →https://doi.org/10.1016/0092-8674(85)90133-3openalex-snapshot
T cell antigen receptors and the immunoglobulin supergene family
inferredcites →https://doi.org/10.1016/0092-8674(89)90879-9openalex-snapshot
Somatic hyperconversion diversifies the single VH gene of the chicken with a high incidence in the D region
inferredcites →https://doi.org/10.1016/0092-8674(94)90291-7openalex-snapshot
The ABCs of floral homeotic genes
inferredcites →https://doi.org/10.1016/b978-1-4832-2734-4.50017-6openalex-snapshot
Evolutionary Divergence and Convergence in Proteins
inferredcites →https://doi.org/10.1016/b978-1-4832-2734-4.50023-1openalex-snapshot
Structural and Functional Aspects of Cytochrome c in Relation to Evolution
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The Role of Mutations in Evolution
inferredcites →https://doi.org/10.1016/j.gene.2004.09.027openalex-snapshot
Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages
inferredcites →https://doi.org/10.1016/j.gene.2004.11.036openalex-snapshot
Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution
inferredcites →https://doi.org/10.1016/j.gene.2005.09.002openalex-snapshot
Statistical properties of the methods for detecting positively selected amino acid sites
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On the origins of the adaptive immune system: novel insights from invertebrates and cold-blooded vertebrates
inferredcites →https://doi.org/10.1016/j.pbi.2005.01.001openalex-snapshot
Polyploidy and genome evolution in plants
inferredcites →https://doi.org/10.1016/j.tplants.2004.06.004openalex-snapshot
The ALDH gene superfamily of Arabidopsis
inferredcites →https://doi.org/10.1016/j.ygeno.2003.10.009openalex-snapshot
Odorant and vomeronasal receptor genes in two mouse genome assemblies
inferredcites →https://doi.org/10.1016/s0014-5793(98)01470-7openalex-snapshot
Identification of regions in which positive selection may operate in S‐RNase of Rosaceae: Implication for S‐allele‐specific recognition sites in S‐RNase
inferredcites →https://doi.org/10.1016/s0021-9258(17)30652-xopenalex-snapshot
Sugar-nucleotide donor specificity of histo-blood group A and B transferases is based on amino acid substitutions.
inferredcites →https://doi.org/10.1016/s0021-9258(18)69561-4openalex-snapshot
The Reversible Removal of Cytochrome c from Mitochondria
inferredcites →https://doi.org/10.1016/s0021-9258(18)90908-7openalex-snapshot
Stomach lysozymes of ruminants. II. Amino acid sequence of cow lysozyme 2 and immunological comparisons with other lysozymes.
inferredcites →https://doi.org/10.1016/s0022-5193(62)80005-8openalex-snapshot
On the evolution of the base composition of DNA
inferredcites →https://doi.org/10.1016/s0065-2660(08)60237-0openalex-snapshot
Possible Significance of Duplication in Evolution
inferredcites →https://doi.org/10.1016/s0092-8674(03)00606-8openalex-snapshot
The Gene csd Is the Primary Signal for Sexual Development in the Honeybee and Encodes an SR-Type Protein
inferredcites →https://doi.org/10.1016/s0168-9525(99)01776-xopenalex-snapshot
Pax 6: mastering eye morphogenesis and eye evolution
inferredcites →https://doi.org/10.1016/s0168-9525(99)01922-8openalex-snapshot
Protein-length distributions for the three domains of life
inferredcites →https://doi.org/10.1016/s0378-1119(03)00670-xopenalex-snapshot
Investigating single nucleotide polymorphism (SNP) density in the human genome and its implications for molecular evolution
inferredcites →https://doi.org/10.1016/s1369-5266(00)00139-4openalex-snapshot
Development of floral organ identity: stories from the MADS house
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1017/cbo9780511807022.043openalex-snapshot
Molecular Evolution and Phylogeny
inferredcites →https://doi.org/10.1017/cbo9781139382069openalex-snapshot
Materials for the Study of Variation
inferredcites →https://doi.org/10.1017/s0016672300011459openalex-snapshot
Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles
inferredcites →https://doi.org/10.1017/s0016672300020413openalex-snapshot
Relationship between allozyme heterozygosity and rates of divergence
inferredcites →https://doi.org/10.1017/s0016672300026938openalex-snapshot
Accumulation of mutations in sexual and asexual populations
inferredcites →https://doi.org/10.1017/s0016672303006128openalex-snapshot
Potential impact of recombination on sitewise approaches for detecting positive natural selection
inferredcites →https://doi.org/10.1038/189704a0openalex-snapshot
Gene Evolution and the Hæmoglobins
inferredcites →https://doi.org/10.1038/202147a0openalex-snapshot
Amino-Acid Sequence Investigations of Fibrinopeptides from Various Mammals: Evolutionary Implications
inferredcites →https://doi.org/10.1038/210663b0openalex-snapshot
Molecules and Evolution
inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot
Evolutionary Rate at the Molecular Level
inferredcites →https://doi.org/10.1038/2191114a0openalex-snapshot
“Haldane's Dilemma” and the Rate of Evolution
inferredcites →https://doi.org/10.1038/221040a0openalex-snapshot
Gene Duplication and Nucleotide Substitution in Evolution
inferredcites →https://doi.org/10.1038/246096a0openalex-snapshot
Slightly Deleterious Mutant Substitutions in Evolution
inferredcites →https://doi.org/10.1038/252351a0openalex-snapshot
Mutational pressure as the main cause of molecular evolution and polymorphism
inferredcites →https://doi.org/10.1038/256050a0openalex-snapshot
Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex
inferredcites →https://doi.org/10.1038/262491a0openalex-snapshot
Testing the neutral mutation hypothesis by distribution of single locus heterozygosity
inferredcites →https://doi.org/10.1038/267275a0openalex-snapshot
Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
inferredcites →https://doi.org/10.1038/291682a0openalex-snapshot
Allosteric regulation of crocodilian haemoglobin
inferredcites →https://doi.org/10.1038/292237a0openalex-snapshot
Pseudogenes as a paradigm of neutral evolution
inferredcites →https://doi.org/10.1038/299111a0openalex-snapshot
Molecular drive: a cohesive mode of species evolution
inferredcites →https://doi.org/10.1038/318478a0openalex-snapshot
Resistance to β-lactam antibiotics by re-modelling the active site of an E. coli penicillin-binding protein
inferredcites →https://doi.org/10.1038/326765a0openalex-snapshot
Behaviour modification by in vitro mutagenesis of a variable region within the period gene of Drosophila
inferredcites →https://doi.org/10.1038/335167a0openalex-snapshot
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
inferredcites →https://doi.org/10.1038/335265a0openalex-snapshot
MHC polymorphism pre-dating speciation
inferredcites →https://doi.org/10.1038/335268a0openalex-snapshot
HLA-A and B polymorphisms predate the divergence of humans and chimpanzees
inferredcites →https://doi.org/10.1038/35002070openalex-snapshot
Rapid evolution of male reproductive genes in the descent of man
inferredcites →https://doi.org/10.1038/35083562openalex-snapshot
Morphological and ecological complexity in early eukaryotic ecosystems
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/42711openalex-snapshot
Molecular evidence for an ancient duplication of the entire yeast genome
inferredcites →https://doi.org/10.1038/hdy.1969.10openalex-snapshot
The substitutional load in a finite population
inferredcites →https://doi.org/10.1038/nature01535openalex-snapshot
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
inferredcites →https://doi.org/10.1038/nature03001openalex-snapshot
Finishing the euchromatic sequence of the human genome
inferredcites →https://doi.org/10.1038/ng0193-88openalex-snapshot
Structure and physical map of 64 variable segments in the 3′ 0.8–megabase region of the human immunoglobulin heavy–chain locus
inferredcites →https://doi.org/10.1038/nn800openalex-snapshot
The olfactory receptor gene superfamily of the mouse
inferredcites →https://doi.org/10.1038/nrg733openalex-snapshot
The rapid evolution of reproductive proteins
inferredcites →https://doi.org/10.1038/scientificamerican1179-98openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/sj.hdy.6800019openalex-snapshot
Sperm competition and the maintenance of polymorphism
inferredcites →https://doi.org/10.1046/j.1365-2540.2001.0923a.xopenalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1046/j.1432-1327.1998.2510549.xopenalex-snapshot
Human aldehyde dehydrogenase gene family
inferredcites →https://doi.org/10.1073/pnas.0307147101openalex-snapshot
Signatures of selection among sex-determining alleles of the honey bee
inferredcites →https://doi.org/10.1073/pnas.0307882100openalex-snapshot
The human olfactory receptor gene family
inferredcites →https://doi.org/10.1073/pnas.0408480102openalex-snapshot
The descent of the antibody-based immune system by gradual evolution
inferredcites →https://doi.org/10.1073/pnas.0500932102openalex-snapshot
A single amino acid converts a repressor to an activator of flowering
inferredcites →https://doi.org/10.1073/pnas.0501922102openalex-snapshot
Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods
inferredcites →https://doi.org/10.1073/pnas.062526999openalex-snapshot
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
inferredcites →https://doi.org/10.1073/pnas.0630618100openalex-snapshot
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
inferredcites →https://doi.org/10.1073/pnas.0830022100openalex-snapshot
Positive selection in the egg receptor for abalone sperm lysin
inferredcites →https://doi.org/10.1073/pnas.1635157100openalex-snapshot
Evolution of olfactory receptor genes in the human genome
inferredcites →https://doi.org/10.1073/pnas.182432999openalex-snapshot
Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
inferredcites →https://doi.org/10.1073/pnas.192449699openalex-snapshot
Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
inferredcites →https://doi.org/10.1073/pnas.24.7.253openalex-snapshot
The Distribution of Gene Frequencies Under Irreversible Mutation
inferredcites →https://doi.org/10.1073/pnas.251526398openalex-snapshot
A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
inferredcites →https://doi.org/10.1073/pnas.252626899openalex-snapshot
Near-neutrality in evolution of genes and gene regulation
inferredcites →https://doi.org/10.1073/pnas.2536656100openalex-snapshot
Hox cluster duplications and the opportunity for evolutionary novelties
inferredcites →https://doi.org/10.1073/pnas.2536718100openalex-snapshot
Widespread purifying selection at polymorphic sites in human protein-coding loci
inferredcites →https://doi.org/10.1073/pnas.42.11.855openalex-snapshot
AN ESTIMATE OF THE MUTATIONAL DAMAGE IN MAN FROM DATA ON CONSANGUINEOUS MARRIAGES
inferredcites →https://doi.org/10.1073/pnas.48.4.582openalex-snapshot
ON THE GENETIC BASIS OF VARIATION AND HETEROGENEITY OF DNA BASE COMPOSITION
inferredcites →https://doi.org/10.1073/pnas.50.4.672openalex-snapshot
PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C
inferredcites →https://doi.org/10.1073/pnas.75.11.5618openalex-snapshot
Model for evolution of Y chromosomes and dosage compensation.
inferredcites →https://doi.org/10.1073/pnas.78.1.450openalex-snapshot
Rapidly evolving mouse alpha-globin-related pseudo gene and its evolutionary history.
inferredcites →https://doi.org/10.1073/pnas.78.12.7639openalex-snapshot
Sequence relationships among the hemagglutinin genes of 12 subtypes of influenza A virus.
inferredcites →https://doi.org/10.1073/pnas.86.3.958openalex-snapshot
Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection.
inferredcites →https://doi.org/10.1073/pnas.87.23.9315openalex-snapshot
Convergent evolution of the red- and green-like visual pigment genes in fish, Astyanax fasciatus, and human.
inferredcites →https://doi.org/10.1073/pnas.88.21.9823openalex-snapshot
Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae.
inferredcites →https://doi.org/10.1073/pnas.91.18.8388openalex-snapshot
Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses.
inferredcites →https://doi.org/10.1073/pnas.92.11.4957openalex-snapshot
Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa.
inferredcites →https://doi.org/10.1073/pnas.93.17.9096openalex-snapshot
Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex.
inferredcites →https://doi.org/10.1073/pnas.93.7.2873openalex-snapshot
Accelerated evolution and Muller's rachet in endosymbiotic bacteria.
inferredcites →https://doi.org/10.1073/pnas.94.15.7712openalex-snapshot
Long term trends in the evolution of H(3) HA1 human influenza type A
inferredcites →https://doi.org/10.1073/pnas.94.15.7799openalex-snapshot
Evolution by the birth-and-death process in multigene families of the vertebrate immune system
inferredcites →https://doi.org/10.1073/pnas.95.7.3708openalex-snapshot
Positive Darwinian selection after gene duplication in primate ribonuclease genes
inferredcites →https://doi.org/10.1080/00218839.1963.11100063openalex-snapshot
What Happens to Diploid Drone Larvae in a Honeybee Colony
inferredcites →https://doi.org/10.1083/jcb.130.5.1117openalex-snapshot
Crystal structure and subunit dynamics of the abalone sperm lysin dimer: egg envelopes dissociate dimers, the monomer is the active species.
inferredcites →https://doi.org/10.1086/280418openalex-snapshot
Some Genetic Aspects of Sex
inferredcites →https://doi.org/10.1086/282298openalex-snapshot
Evidence for the Partial Dominance of Recessive Lethal Genes in Natural Populations of Drosophila
inferredcites →https://doi.org/10.1086/282389openalex-snapshot
Evolution in Sexual and Asexual Populations
inferredcites →https://doi.org/10.1086/282445openalex-snapshot
The Gene Material as the Initiator and the Organizing Basis of Life
inferredcites →https://doi.org/10.1086/282542openalex-snapshot
Possible Rates of Gene Substitution in Evolution
inferredcites →https://doi.org/10.1086/282698openalex-snapshot
On the Biological Significance of the Cost of Gene Substitution
inferredcites →https://doi.org/10.1086/282770openalex-snapshot
The Substitutional Load in a Finite Population
inferredcites →https://doi.org/10.1093/aibsbulletin/2.2.14-bopenalex-snapshot
Genetics and the Origin of Species
inferredcites →https://doi.org/10.1093/genetics/103.3.557openalex-snapshot
MODELS OF EVOLUTION OF REPRODUCTIVE ISOLATION
inferredcites →https://doi.org/10.1093/genetics/116.1.153openalex-snapshot
A Test of Neutral Molecular Evolution Based on Nucleotide Data
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/124.4.967openalex-snapshot
Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci.
inferredcites →https://doi.org/10.1093/genetics/129.3.897openalex-snapshot
The selection-mutation-drift theory of synonymous codon usage.
inferredcites →https://doi.org/10.1093/genetics/132.4.1161openalex-snapshot
Population genetics of polymorphism and divergence.
inferredcites →https://doi.org/10.1093/genetics/133.3.693openalex-snapshot
Statistical tests of neutrality of mutations.
inferredcites →https://doi.org/10.1093/genetics/139.2.1067openalex-snapshot
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
inferredcites →https://doi.org/10.1093/genetics/139.4.1805openalex-snapshot
The population genetics of speciation: the evolution of hybrid incompatibilities.
inferredcites →https://doi.org/10.1093/genetics/141.1.413openalex-snapshot
Properties of statistical tests of neutrality for DNA polymorphism data.
inferredcites →https://doi.org/10.1093/genetics/146.1.295openalex-snapshot
Natural Selection and the Frequency Distributions of “Silent” DNA Polymorphism in Drosophila
inferredcites →https://doi.org/10.1093/genetics/148.3.929openalex-snapshot
Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene
inferredcites →https://doi.org/10.1093/genetics/155.1.431openalex-snapshot
Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
inferredcites →https://doi.org/10.1093/genetics/158.4.1697openalex-snapshot
The Molecular Genetics and Evolution of Red and Green Color Vision in Vertebrates
inferredcites →https://doi.org/10.1093/genetics/16.2.97openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/16.3.290openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/24.4.538openalex-snapshot
THE DISTRIBUTION OF SELF-STERILITY ALLELES IN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/49.4.725openalex-snapshot
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION
inferredcites →https://doi.org/10.1093/genetics/50.1.1openalex-snapshot
THE GENETIC STRUCTURE OF NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER. I. SPONTANEOUS MUTATION RATE OF POLYGENES CONTROLLING VIABILITY
inferredcites →https://doi.org/10.1093/genetics/54.2.595openalex-snapshot
A MOLECULAR APPROACH TO THE STUDY OF GENIC HETEROZYGOSITY IN NATURAL POPULATIONS. II. AMOUNT OF VARIATION AND DEGREE OF HETEROZYGOSITY IN NATURAL POPULATIONS OF DROSOPHILA PSEUDOOBSCURA
inferredcites →https://doi.org/10.1093/genetics/55.3.469openalex-snapshot
THE NUMBER OF BALANCED POLYMORPHISMS THAT CAN BE MAINTAINED IN A NATURAL POPULATION
inferredcites →https://doi.org/10.1093/genetics/55.3.483openalex-snapshot
CONTINUOUSLY DISTRIBUTED FACTORS AFFECTING FITNESS
inferredcites →https://doi.org/10.1093/genetics/55.3.493openalex-snapshot
HETEROSIS AS A MAJOR CAUSE OF HETEROZYGOSITY IN NATURE
inferredcites →https://doi.org/10.1093/genetics/68.1.169openalex-snapshot
CORRIGENDUM
inferredcites →https://doi.org/10.1093/genetics/68.1.169aopenalex-snapshot
FERTILITY EXCESS NECESSARY FOR GENE SUBSTITUTION IN REGULATED POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot
THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
inferredcites →https://doi.org/10.1093/genetics/85.4.789openalex-snapshot
HETEROSIS OR NEUTRALITY?
inferredcites →https://doi.org/10.1093/genetics/86.4.901openalex-snapshot
PERSISTENCE OF COMMON ALLELES IN TWO RELATED POPULATIONS OR SPECIES
inferredcites →https://doi.org/10.1093/genetics/88.2.367openalex-snapshot
STATISTICAL STUDIES ON PROTEIN POLYMORPHISM IN NATURAL POPULATIONS II. GENE DIFFERENTIATION BETWEEN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/91.3.609openalex-snapshot
POPULATION DYNAMICS OF SEX-DETERMINING ALLELES IN HONEY BEES AND SELF-INCOMPATIBILITY ALLELES IN PLANTS
inferredcites →https://doi.org/10.1093/genetics/98.2.441openalex-snapshot
GENETIC VARIABILITY MAINTAINED BY MUTATION AND OVERDOMINANT SELECTION IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/hmg/10.6.591openalex-snapshot
Prediction of deleterious human alleles
inferredcites →https://doi.org/10.1093/hmg/11.5.535openalex-snapshot
Different evolutionary processes shaped the mouse and human olfactory receptor gene families
inferredcites →https://doi.org/10.1093/molbev/msg140openalex-snapshot
The Evolution of Transcriptional Regulation in Eukaryotes
inferredcites →https://doi.org/10.1093/molbev/msg152openalex-snapshot
Antiquity and Evolution of the MADS-Box Gene Family Controlling Flower Development in Plants
inferredcites →https://doi.org/10.1093/molbev/msg193openalex-snapshot
Sex-Linked Mammalian Sperm Proteins Evolve Faster Than Autosomal Ones
inferredcites →https://doi.org/10.1093/molbev/msg209openalex-snapshot
Patterns of Variation Within Self-Incompatibility Loci
inferredcites →https://doi.org/10.1093/molbev/msh088openalex-snapshot
Estimating Absolute Rates of Synonymous and Nonsynonymous Nucleotide Substitution in Order to Characterize Natural Selection and Date Species Divergences
inferredcites →https://doi.org/10.1093/molbev/msh098openalex-snapshot
False-Positive Selection Identified by ML-Based Methods: Examples from the Sig1 Gene of the Diatom Thalassiosira weissflogii and the tax Gene of a Human T-cell Lymphotropic Virus
inferredcites →https://doi.org/10.1093/molbev/msh117openalex-snapshot
Frequent False Detection of Positive Selection by the Likelihood Method with Branch-Site Models
inferredcites →https://doi.org/10.1093/molbev/msh165openalex-snapshot
Origin and Maintenance of a Broad-Spectrum Disease Resistance Locus in Arabidopsis
inferredcites →https://doi.org/10.1093/molbev/msh230openalex-snapshot
Nonneutral Evolution of the Transcribed Pseudogene Makorin1-p1 in Mice
inferredcites →https://doi.org/10.1093/molbev/msi035openalex-snapshot
Molecular Population Genetics and the Search for Adaptive Evolution in Plants
inferredcites →https://doi.org/10.1093/molbev/msi080openalex-snapshot
Statistical and Molecular Analyses of Evolutionary Significance of Red-Green Color Vision and Color Blindness in Vertebrates
inferredcites →https://doi.org/10.1093/molbev/msi097openalex-snapshot
Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msi105openalex-snapshot
Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection
inferredcites →https://doi.org/10.1093/molbev/msi120openalex-snapshot
Variation in the Pattern of Synonymous and Nonsynonymous Difference Between Two Fungal Genomes
inferredcites →https://doi.org/10.1093/molbev/msi146openalex-snapshot
Directed Mutagenesis Confirms the Functional Importance of Positively Selected Sites in Polygalacturonase Inhibitor Protein
inferredcites →https://doi.org/10.1093/molbev/msi229openalex-snapshot
Evolutionary Change of the Numbers of Homeobox Genes in Bilateral Animals
inferredcites →https://doi.org/10.1093/nar/25.21.4173openalex-snapshot
Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals
inferredcites →https://doi.org/10.1093/nar/gni003openalex-snapshot
A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes
inferredcites →https://doi.org/10.1093/oso/9780195068832.001.0001openalex-snapshot
The Causes of Molecular Evolution
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a104022openalex-snapshot
SALIVARY CHROMOSOME MAPS
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a110475openalex-snapshot
Molecular Evolutionary Genetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003764openalex-snapshot
Reliabilities of Parsimony-based and Likelihood-based Methods for Detecting Positive Selection at Single Amino Acid Sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003824openalex-snapshot
Maximum-Likelihood Approach for Gene Family Evolution Under Functional Divergence
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003829openalex-snapshot
Evolutionary Dynamics of the T-Cell Receptor VB Gene Family as Inferred from the Human and Mouse Genomic Sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004010openalex-snapshot
Simulation Study of the Reliability and Robustness of the Statistical Methods for Detecting Positive Selection at Single Amino Acid Sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004021openalex-snapshot
Mammalian Sperm Proteins Are Rapidly Evolving: Evidence of Positive Selection in Functionally Diverse Genes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004233openalex-snapshot
Pervasive Adaptive Evolution in Mammalian Fertilization Proteins
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025557openalex-snapshot
Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025598openalex-snapshot
Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026042openalex-snapshot
A method for detecting positive selection at single amino acid sites
showing the first 200 of 291

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Going with the Flow: Understanding Population Dynamics of Malabar Red Snapper (Lutjanus Malabaricus) in the Indo-Pacific
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Nonadaptive processes in primate and human evolution
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Natural selection: A concept in need of some evolution?
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Neutral theory and beyond: A systematic review of molecular evolution education
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Mutations in membrane‐fusion subunit of spike glycoprotein play crucial role in the recent outbreak of COVID‐19
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High‐density mutation tracks are associated with proton‐beam irradiation patterns in Sorghum bicolor
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Bridging Time Scales in Evolutionary Biology
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Measuring Rather Than Imagining Somatic Cell Selection and Clonal Evolution
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Molecular Evolution: A Brief Introduction
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Sequenzbasierte Typisierung von Prokaryoten
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How Are Traits Typed for the Purpose of Ascribing Functions to Them?
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A Preliminary Transcriptomic Study of Galaxiid Fishes Reveals a Larval Glycoprotein Gene Under Strong Positive Selection
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Neutral Genetic Variation
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The Two Regimes of Neutral Evolution: Localization on Hubs and Delocalized Diffusion
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Sequenced-Based Typing of Prokaryotes
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Evolution, Molecular
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Evolution, Molecular
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Evolution, Molecular
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GC Content Heterogeneity
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Comparative Genomics Reveals Long, Evolutionarily Conserved, Low-Complexity Islands in Yeast Proteins
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Genetic Code Error Minimization as a Non-Adaptive But Beneficial Trait
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Gene duplication, allelic diversity, selection processes and adaptive value of MHC class II DRB genes of the bank vole, Clethrionomys glareolus
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Lineage pattern, trans-species polymorphism, and selection pressure among the major lineages of feline Mhc-DRB peptide-binding region
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Comprehensive annotation and evolutionary insights into the canine (Canis lupus familiaris) antigen receptor loci
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Genomic and microarray approaches to coral reef conservation biology
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EST-derived SNP discovery and selective pressure analysis in Pacific white shrimp (Litopenaeus vannamei)
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Introduction—development and phylogeny of the arthropods: Darwin’s legacy
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Population genetics: past, present, and future
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How do the physiological traits of a lizard change during its invasion of an oceanic island?
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Biogeography of elytral ornaments in Palearctic genus Carabus: disentangling the effects of space, evolution and environment at a continental scale
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Recent duplication and positive selection of the GAGE gene family
inferred← citeshttps://doi.org/10.1007/s10709-012-9689-yopenalex-snapshot
The functional importance of sequence versus expression variability of MHC alleles in parasite resistance
inferred← citeshttps://doi.org/10.1007/s10739-019-09583-4openalex-snapshot
The Creativity of Natural Selection? Part II: The Synthesis and Since
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Polymorphism of the ovine keratin-associated protein 1-4 gene (KRTAP1-4)
inferred← citeshttps://doi.org/10.1007/s11033-011-0930-zopenalex-snapshot
Cloning and characterization of boron transporters in Brassica napus
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Biological Principles and Threshold Concepts for Understanding Natural Selection
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Revisiting protein heterozygosity in plants—nucleotide diversity in allozyme coding genes of conifer Pinus sylvestris
inferred← citeshttps://doi.org/10.1007/s11434-008-0202-zopenalex-snapshot
Positive Darwinian selection in human population: A review
inferred← citeshttps://doi.org/10.1007/s11692-015-9315-xopenalex-snapshot
Sexual Selection and Mate Choice: Insights from Neutralist Perspectives
inferred← citeshttps://doi.org/10.1007/s12031-014-0327-2openalex-snapshot
Vertebrate Paralogous CRMPs in Nervous System: Evolutionary, Structural, and Functional Interplay
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The Founding Trinity of Molecular Evolution
inferred← citeshttps://doi.org/10.1007/s12052-008-0094-zopenalex-snapshot
Losing Sight of Regressive Evolution
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New insights into molecular evolution: prospects from the Barcode of Life Initiative (BOLI)
inferred← citeshttps://doi.org/10.1007/s12304-018-9333-zopenalex-snapshot
The Dual Nature of Mimicry: Organismal Form and Beholder’s Eye
inferred← citeshttps://doi.org/10.1007/s13238-013-0004-1openalex-snapshot
Genome-scale analysis of demographic history and adaptive selection
inferred← citeshttps://doi.org/10.1007/s43657-021-00017-yopenalex-snapshot
Origin and Spread of the ALDH2 Glu504Lys Allele
inferred← citeshttps://doi.org/10.1007/s44372-026-00480-9openalex-snapshot
Genome-wide identification and comprehensive analysis of annexin encoding genes in Vigna mungo (L.) Hepper
inferred← citeshttps://doi.org/10.1016/b978-0-12-372522-6.00035-9openalex-snapshot
Feedbacks Between the Nitrogen, Carbon and Oxygen Cycles
inferred← citeshttps://doi.org/10.1016/b978-0-12-411460-9.00007-0openalex-snapshot
Protein Conformational Dynamics and Signaling in Evolution and Pathophysiology
inferred← citeshttps://doi.org/10.1016/b978-1-78548-277-9.50004-8openalex-snapshot
Which Model(s) Explain Biodiversity?
inferred← citeshttps://doi.org/10.1016/j.actatropica.2012.05.010openalex-snapshot
Identification of novel glutathione transferases in Echinococcus granulosus. An evolutionary perspective
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Somatic mutations in human ontogenesis and their impact on health
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2020.107572openalex-snapshot
Exploration of space to achieve scientific breakthroughs
inferred← citeshttps://doi.org/10.1016/j.bse.2011.05.016openalex-snapshot
Gene duplication and adaptive evolution of the CHS-like genes within the genus Rheum (Polygonaceae)
inferred← citeshttps://doi.org/10.1016/j.cell.2019.12.015openalex-snapshot
Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2011.08.001openalex-snapshot
Genes under positive selection in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.05.037openalex-snapshot
Dynamic expedition of leading mutations in SARS-CoV-2 spike glycoproteins
inferred← citeshttps://doi.org/10.1016/j.drudis.2009.09.006openalex-snapshot
Anticancer drug discovery in the future: an evolutionary perspective
inferred← citeshttps://doi.org/10.1016/j.drudis.2010.10.007openalex-snapshot
Understanding infectious agents from an in silico perspective
inferred← citeshttps://doi.org/10.1016/j.forsciint.2010.09.011openalex-snapshot
Pharmacogenetics in medico-legal context
inferred← citeshttps://doi.org/10.1016/j.fsi.2015.01.030openalex-snapshot
Development of Vibrio spp. infection resistance related SNP markers using multiplex SNaPshot genotyping method in the clam Meretrix meretrix
inferred← citeshttps://doi.org/10.1016/j.gene.2007.03.017openalex-snapshot
Purifying selection and positive selection on the myxovirus resistance gene in mammals and chickens
inferred← citeshttps://doi.org/10.1016/j.gene.2008.06.024openalex-snapshot
Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)
inferred← citeshttps://doi.org/10.1016/j.gene.2012.12.096openalex-snapshot
High altitude adaptation of the schizothoracine fishes (Cyprinidae) revealed by the mitochondrial genome analyses
inferred← citeshttps://doi.org/10.1016/j.gene.2013.09.114openalex-snapshot
Extraordinarily low evolutionary rates of short wavelength-sensitive opsin pseudogenes
inferred← citeshttps://doi.org/10.1016/j.gene.2021.145577openalex-snapshot
Genomic and molecular evolutionary dynamics of transcriptional response regulator genes in bacterial species of the Harveyi clade of Vibrio
inferred← citeshttps://doi.org/10.1016/j.jmb.2009.11.075openalex-snapshot
Lineage-Specific Differences in the Amino Acid Substitution Process
inferred← citeshttps://doi.org/10.1016/j.jtbi.2008.12.029openalex-snapshot
The role of weak selection and high mutation rates in nearly neutral evolution
inferred← citeshttps://doi.org/10.1016/j.jtbi.2011.01.025openalex-snapshot
Fixation of a deleterious allele under mutation pressure and finite selection intensity
inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.01.004openalex-snapshot
Fixation and absorption in a fluctuating environment
inferred← citeshttps://doi.org/10.1016/j.jtbi.2022.111236openalex-snapshot
Diffusion approximations in population genetics and the rate of Muller’s ratchet
inferred← citeshttps://doi.org/10.1016/j.meegid.2008.04.003openalex-snapshot
Rate heterogeneity in the evolution of Helicobacter pylori and the behavior of homoplastic sites
inferred← citeshttps://doi.org/10.1016/j.meegid.2008.07.002openalex-snapshot
Detecting recombination and diversifying selection in human alpha-papillomavirus
inferred← citeshttps://doi.org/10.1016/j.meegid.2017.01.010openalex-snapshot
Comparative analysis of variation and selection in the HCV genome
inferred← citeshttps://doi.org/10.1016/j.physa.2023.128569openalex-snapshot
Bifurcation in cellular evolution
inferred← citeshttps://doi.org/10.1016/j.tig.2009.01.002openalex-snapshot
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation
inferred← citeshttps://doi.org/10.1016/j.tig.2009.07.004openalex-snapshot
Neutral evolution on mammalian protein surfaces
inferred← citeshttps://doi.org/10.1016/j.tpb.2014.11.004openalex-snapshot
Formal properties of the probability of fixation: Identities, inequalities and approximations
inferred← citeshttps://doi.org/10.1016/j.tpb.2018.11.005openalex-snapshot
Sex: The power of randomization
inferred← citeshttps://doi.org/10.1016/j.tube.2025.102690openalex-snapshot
Evaluating selection at intermediate scales within genes provides robust identification of genes under positive selection in M. tuberculosis clinical isolates
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.06.039openalex-snapshot
Comparative mitochondrial genome analysis of Neodontobutis hainanensis and Perccottus glenii reveals conserved genome organization and phylogeny
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.06.008openalex-snapshot
Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes
inferred← citeshttps://doi.org/10.1017/9781139107976openalex-snapshot
Introduction to Population Biology
inferred← citeshttps://doi.org/10.1017/9781139107976.001openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1017/9781139107976.002openalex-snapshot
Darwin Questions the Fixity of Species
inferred← citeshttps://doi.org/10.1017/9781139107976.003openalex-snapshot
Darwin’s Evolutionary Theories
inferred← citeshttps://doi.org/10.1017/9781139107976.004openalex-snapshot
Understanding Natural Selection
inferred← citeshttps://doi.org/10.1017/9781139107976.005openalex-snapshot
Exponential Growth
inferred← citeshttps://doi.org/10.1017/9781139107976.006openalex-snapshot
Logistic Growth
inferred← citeshttps://doi.org/10.1017/9781139107976.007openalex-snapshot
Life Tables
inferred← citeshttps://doi.org/10.1017/9781139107976.008openalex-snapshot
Growth of Age-Structured and Stage-Structured Populations
inferred← citeshttps://doi.org/10.1017/9781139107976.009openalex-snapshot
Evolution of Life Histories
inferred← citeshttps://doi.org/10.1017/9781139107976.010openalex-snapshot
The Hardy–Weinberg Principle
inferred← citeshttps://doi.org/10.1017/9781139107976.011openalex-snapshot
Mutation and the Genetic Variation of Populations
inferred← citeshttps://doi.org/10.1017/9781139107976.012openalex-snapshot
Genetic Drift and Effective Population Size
inferred← citeshttps://doi.org/10.1017/9781139107976.013openalex-snapshot
Inbreeding
inferred← citeshttps://doi.org/10.1017/9781139107976.014openalex-snapshot
Migration, Gene Flow and Differentiation of Populations
inferred← citeshttps://doi.org/10.1017/9781139107976.015openalex-snapshot
Haploid and Zygotic Selection
inferred← citeshttps://doi.org/10.1017/9781139107976.016openalex-snapshot
Applying Zygotic Selection Models to Natural Systems
inferred← citeshttps://doi.org/10.1017/9781139107976.017openalex-snapshot
Polygenic Inheritance and Quantitative Genetics
inferred← citeshttps://doi.org/10.1017/9781139107976.018openalex-snapshot
Population Genetics: Summary and Synthesis
inferred← citeshttps://doi.org/10.1017/9781139107976.019openalex-snapshot
Interspecific Competition
inferred← citeshttps://doi.org/10.1017/9781139107976.020openalex-snapshot
Predator–Prey Interactions
inferred← citeshttps://doi.org/10.1017/9781139107976.021openalex-snapshot
Species Interactions and Community Structure
inferred← citeshttps://doi.org/10.1017/9781139107976.022openalex-snapshot
Animal Behaviour, Altruism and Limiting Aggression
inferred← citeshttps://doi.org/10.1017/9781139107976.023openalex-snapshot
Sexual Selection and Mating Systems
inferred← citeshttps://doi.org/10.1017/9781139107976.024openalex-snapshot
Epilogue
inferred← citeshttps://doi.org/10.1017/9781139107976.025openalex-snapshot
Glossary
inferred← citeshttps://doi.org/10.1017/9781139107976.026openalex-snapshot
Index
inferred← citeshttps://doi.org/10.1021/acs.biochem.6b00818openalex-snapshot
An Atypical α/β-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
inferred← citeshttps://doi.org/10.1038/hdy.2011.97openalex-snapshot
Evolution of adaptive phenotypic traits without positive Darwinian selection
inferred← citeshttps://doi.org/10.1038/msb4100152openalex-snapshot
Chance and necessity in cellular response to challenge
inferred← citeshttps://doi.org/10.1038/nrg2473openalex-snapshot
Neutralism and selectionism: a network-based reconciliation
inferred← citeshttps://doi.org/10.1038/nrg2480openalex-snapshot
The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity
inferred← citeshttps://doi.org/10.1038/s41559-017-0237-0openalex-snapshot
Parallel genome reduction in symbionts descended from closely related free-living bacteria
inferred← citeshttps://doi.org/10.1038/s41564-019-0412-yopenalex-snapshot
Chance and pleiotropy dominate genetic diversity in complex bacterial environments
inferred← citeshttps://doi.org/10.1038/s41579-023-00852-yopenalex-snapshot
Staphylococcus aureus host interactions and adaptation
inferred← citeshttps://doi.org/10.1038/s41598-017-01490-0openalex-snapshot
Expression and Activity of the BioH Esterase of Biotin Synthesis is Independent of Genome Context
inferred← citeshttps://doi.org/10.1038/s41598-019-53291-2openalex-snapshot
Distribution of aquaporins and sodium transporters in the gastrointestinal tract of a desert hare, Lepus yarkandensis
inferred← citeshttps://doi.org/10.1038/s41598-024-74061-9openalex-snapshot
Genetic diversity and origin of Kazakh Tobet Dogs
inferred← citeshttps://doi.org/10.1038/s41598-025-29872-9openalex-snapshot
A key amino acid site associated with rhodopsin mammal evolution to diurnal vision
inferred← citeshttps://doi.org/10.1038/s41598-025-32531-8openalex-snapshot
Rhodopsin molecular evolution from mouse to human phenylalanine 88 to leucine substitution enhances thermal stability and post-activation decay
inferred← citeshttps://doi.org/10.1038/sj.hdy.6801094openalex-snapshot
Revisiting horizontal transfer of transposable elements in Drosophila
inferred← citeshttps://doi.org/10.1042/bcj20160577openalex-snapshot
Venomics: integrative venom proteomics and beyond
inferred← citeshttps://doi.org/10.1063/1.4871365openalex-snapshot
Exploring the significance of structural hierarchy in material systems—A review
inferred← citeshttps://doi.org/10.1073/pnas.0607105104openalex-snapshot
Adaptations to fluctuating selection in Drosophila
inferred← citeshttps://doi.org/10.1073/pnas.0701572104openalex-snapshot
Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila
inferred← citeshttps://doi.org/10.1073/pnas.0702207104openalex-snapshot
The frailty of adaptive hypotheses for the origins of organismal complexity
inferred← citeshttps://doi.org/10.1073/pnas.0703349104openalex-snapshot
The new mutation theory of phenotypic evolution
inferred← citeshttps://doi.org/10.1073/pnas.0705658104openalex-snapshot
Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
inferred← citeshttps://doi.org/10.1073/pnas.0710150104openalex-snapshot
Genetic drift at expanding frontiers promotes gene segregation
inferred← citeshttps://doi.org/10.1073/pnas.0901522106openalex-snapshot
In the light of directed evolution: Pathways of adaptive protein evolution
inferred← citeshttps://doi.org/10.1073/pnas.0901855106openalex-snapshot
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
inferred← citeshttps://doi.org/10.1073/pnas.0913970107openalex-snapshot
A zinc-binding site by negative selection induces metallodrug susceptibility in an essential chaperonin
inferred← citeshttps://doi.org/10.1073/pnas.1004823107openalex-snapshot
Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain
inferred← citeshttps://doi.org/10.1073/pnas.1304227110openalex-snapshot
Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma
inferred← citeshttps://doi.org/10.1073/pnas.1406556111openalex-snapshot
Algorithms, games, and evolution
inferred← citeshttps://doi.org/10.1073/pnas.1411012111openalex-snapshot
Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever
inferred← citeshttps://doi.org/10.1073/pnas.2120037119openalex-snapshot
Toward a theory of evolution as multilevel learning
inferred← citeshttps://doi.org/10.1080/00028487.2011.621813openalex-snapshot
Differential Survival amongsSOD‐1*Genotypes in Chinook Salmon
inferred← citeshttps://doi.org/10.1080/07391102.2020.1748717openalex-snapshot
Comprehensive study of the genes involved in chlorophyll synthesis and degradation pathways in some monocot and dicot plant species
inferred← citeshttps://doi.org/10.1080/14888386.2007.9712822openalex-snapshot
FORUM
inferred← citeshttps://doi.org/10.1086/594506openalex-snapshot
The Role of Causal Processes in the Neutral and Nearly Neutral Theories
inferred← citeshttps://doi.org/10.1093/9780191834615.001.0001openalex-snapshot
The Science of the New
inferred← citeshttps://doi.org/10.1093/9780191834615.002.0004openalex-snapshot
Dedication
inferred← citeshttps://doi.org/10.1093/9780191834615.002.0005openalex-snapshot
Foreword
inferred← citeshttps://doi.org/10.1093/9780191834615.002.0006openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0001openalex-snapshot
Entropy, complexity and surprise
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0002openalex-snapshot
The statistics of the new
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0003openalex-snapshot
Temporal patterns of innovations: triggering effects, trends and correlations phenomena
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0004openalex-snapshot
Mechanisms of innovation from biological to cultural evolution
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0005openalex-snapshot
Yule–Simon-like models
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0006openalex-snapshot
Pólya’s urns and Laplace’s rule of succession
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0007openalex-snapshot
Early urn schemes with innovation: Hoppe’s model and the Dirichlet process
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0008openalex-snapshot
Urn schemes with expansion into the adjacent possible
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0009openalex-snapshot
Human and social systems
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0010openalex-snapshot
Socio-technological systems
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0011openalex-snapshot
Biological systems
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0012openalex-snapshot
Law of the large numbers
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0013openalex-snapshot
Theorem of Shannon, McMillan, Breiman
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0014openalex-snapshot
Statistical compressors: Huffman coding
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0015openalex-snapshot
Data compression: LZ77
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0016openalex-snapshot
Taylor’s law for almost Poissonian processes
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0017openalex-snapshot
Beta and Gamma functions and some useful properties
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0018openalex-snapshot
Heaps’ law in the Urn Model with Triggering
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0019openalex-snapshot
Master equation for the Zipf’s law in the Urn Model with Triggering
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0020openalex-snapshot
Results for the Taylor’s law in the Extended Urn Model with Triggering
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0021openalex-snapshot
Heaps’ law in the Urn Model with Semantic Triggering
inferred← citeshttps://doi.org/10.1093/9780191834615.003.0022openalex-snapshot
Epilogue
inferred← citeshttps://doi.org/10.1093/evolut/qpad200openalex-snapshot
The pace of mitochondrial molecular evolution varies with seasonal migration distance
inferred← citeshttps://doi.org/10.1093/gbe/evab290openalex-snapshot
Nucleotide Usage Biases Distort Inferences of the Species Tree
inferred← citeshttps://doi.org/10.1093/gbe/evae198openalex-snapshot
Where the “ruber” Meets the Road: Using the Genome of the Red Diamond Rattlesnake to Unravel the Evolutionary Processes Driving Venom Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evp038openalex-snapshot
A Universal Nonmonotonic Relationship between Gene Compactness and Expression Levels in Multicellular Eukaryotes
inferred← citeshttps://doi.org/10.1093/gbe/evr057openalex-snapshot
The Role of the Effective Population Size in Compensatory Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evu288openalex-snapshot
Genome-Wide Analysis of Adaptive Molecular Evolution in the Carnivorous Plant Utricularia gibba
inferred← citeshttps://doi.org/10.1093/ismejo/wrad035openalex-snapshot
Genome reduction occurred in early Prochlorococcus with an unusually low effective population size
inferred← citeshttps://doi.org/10.1093/jhered/esr097openalex-snapshot
Diversity and Evolutionary Patterns of Immune Genes in Free-Ranging Namibian Leopards (Panthera pardus pardus)
inferred← citeshttps://doi.org/10.1093/molbev/msk025openalex-snapshot
The Rate of Adaptive Evolution in Enteric Bacteria
inferred← citeshttps://doi.org/10.1093/molbev/msn049openalex-snapshot
Overdominance in the Human Genome and Olfactory Receptor Activity
inferred← citeshttps://doi.org/10.1093/molbev/msn123openalex-snapshot
A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus
inferred← citeshttps://doi.org/10.1093/molbev/msn126openalex-snapshot
Programmed Genetic Instability: A Tumor-Permissive Mechanism for Maintaining the Evolvability of Higher Species through Methylation-Dependent Mutation of DNA Repair Genes in the Male Germ Line
inferred← citeshttps://doi.org/10.1093/molbev/msn143openalex-snapshot
Frequent and Widespread Parallel Evolution of Protein Sequences
inferred← citeshttps://doi.org/10.1093/molbev/msn179openalex-snapshot
Evolution of Snake Venom Disintegrins by Positive Darwinian Selection
inferred← citeshttps://doi.org/10.1093/molbev/msn224openalex-snapshot
Uncorrected Nucleotide Bias in mtDNA Can Mimic the Effects of Positive Darwinian Selection
inferred← citeshttps://doi.org/10.1093/molbev/msp019openalex-snapshot
Quantification of Adaptive Evolution of Genes Expressed in Avian Brain and the Population Size Effect on the Efficacy of Selection
inferred← citeshttps://doi.org/10.1093/molbev/msp043openalex-snapshot
Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species
inferred← citeshttps://doi.org/10.1093/molbev/msp129openalex-snapshot
Evolution of Plant MADS Box Transcription Factors: Evidence for Shifts in Selection Associated with Early Angiosperm Diversification and Concerted Gene Duplications
inferred← citeshttps://doi.org/10.1093/molbev/msq122openalex-snapshot
Degeneration of an Intracellular Ion Channel in the Primate Lineage by Relaxation of Selective Constraints
inferred← citeshttps://doi.org/10.1093/molbev/msq138openalex-snapshot
Inference for the Initial Stage of Domain Shuffling: Tracing the Evolutionary Fate of the PIPSL Retrogene in Hominoids
inferred← citeshttps://doi.org/10.1093/molbev/msq165openalex-snapshot
Different Phylogenomic Approaches to Resolve the Evolutionary Relationships among Model Fish Species
inferred← citeshttps://doi.org/10.1093/molbev/msq176openalex-snapshot
Evolutionary History of Arabidopsis thaliana Aminoacyl-tRNA Synthetase Dual-Targeted Proteins
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