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New insights in host-associated microbial diversity with broad and accurate taxonomic resolution

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0006-3207(92)91201-3openalex-snapshot

Conservation evaluation and phylogenetic diversity

inferredcites →https://doi.org/10.1016/j.chom.2015.04.009openalex-snapshot

Microbiota and Host Nutrition across Plant and Animal Kingdoms

inferredcites →https://doi.org/10.1016/j.femsyr.2005.05.007openalex-snapshot

Phylloplane yeasts from Portugal: Seven novel anamorphic species in the Tremellales lineage of the Hymenomycetes (Basidiomycota) producing orange-coloured colonies

inferredcites →https://doi.org/10.1016/j.jtbi.2016.03.016openalex-snapshot

Improving the microbial community reconstruction at the genus level by multiple 16S rRNA regions

inferredcites →https://doi.org/10.1016/j.mimet.2003.08.009openalex-snapshot

Review and re-analysis of domain-specific 16S primers

inferredcites →https://doi.org/10.1016/j.mimet.2013.08.007openalex-snapshot

Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities

inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

inferredcites →https://doi.org/10.1038/ismej.2013.199openalex-snapshot

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

inferredcites →https://doi.org/10.1038/ismej.2014.196openalex-snapshot

Selection on soil microbiomes reveals reproducible impacts on plant function

inferredcites →https://doi.org/10.1038/nature08937openalex-snapshot

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

inferredcites →https://doi.org/10.1038/nmeth.1184openalex-snapshot

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot

UPARSE: highly accurate OTU sequences from microbial amplicon reads

inferredcites →https://doi.org/10.1038/nmeth.2634openalex-snapshot

Practical innovations for high-throughput amplicon sequencing

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/nmeth0910-668bopenalex-snapshot

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

inferredcites →https://doi.org/10.1038/nri3785openalex-snapshot

Periodontitis: from microbial immune subversion to systemic inflammation

inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

inferredcites →https://doi.org/10.1073/pnas.1015676108openalex-snapshot

Bacterial community structures are unique and resilient in full-scale bioenergy systems

inferredcites →https://doi.org/10.1073/pnas.1117018109openalex-snapshot

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

inferredcites →https://doi.org/10.1073/pnas.1207508109openalex-snapshot

Reply to Kiss: Internal transcribed spacer (ITS) remains the best candidate as a universal DNA barcode marker for Fungi despite imperfections

inferredcites →https://doi.org/10.1073/pnas.1321597111openalex-snapshot

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

inferredcites →https://doi.org/10.1073/pnas.1414592112openalex-snapshot

Structure, variation, and assembly of the root-associated microbiomes of rice

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btm563openalex-snapshot

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

inferredcites →https://doi.org/10.1093/bioinformatics/btt499openalex-snapshot

A general species delimitation method with applications to phylogenetic placements

inferredcites →https://doi.org/10.1093/gbe/evu148openalex-snapshot

Gene Loss Rather Than Gene Gain Is Associated with a Host Jump from Monocots to Dicots in the Smut Fungus Melanopsichium pennsylvanicum

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

inferredcites →https://doi.org/10.1105/tpc.113.113969openalex-snapshot

The Transition from a Phytopathogenic Smut Ancestor to an Anamorphic Biocontrol Agent Deciphered by Comparative Whole-Genome Analysis

inferredcites →https://doi.org/10.1111/1462-2920.12439openalex-snapshot

Improved plant resistance to drought is promoted by the root‐associated microbiome as a water stress‐dependent trait

inferredcites →https://doi.org/10.1111/1462-2920.12559openalex-snapshot

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

inferredcites →https://doi.org/10.1111/1462-2920.13102openalex-snapshot

Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi

inferredcites →https://doi.org/10.1111/1755-0998.12065openalex-snapshot

ITS 1 versus ITS 2 as DNA metabarcodes for fungi

inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02051.xopenalex-snapshot

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

inferredcites →https://doi.org/10.1111/j.1467-9868.2011.01018.xopenalex-snapshot

The Phylogenetic Kantorovich–Rubinstein Metric for Environmental Sequence Samples

inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01437.xopenalex-snapshot

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

inferredcites →https://doi.org/10.1126/science.1240659openalex-snapshot

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

inferredcites →https://doi.org/10.1126/science.1262073openalex-snapshot

Determinants of community structure in the global plankton interactome

inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

inferredcites →https://doi.org/10.1128/aem.05220-11openalex-snapshot

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

inferredcites →https://doi.org/10.1128/aem.07448-11openalex-snapshot

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

inferredcites →https://doi.org/10.1128/aem.49.6.1379-1384.1985openalex-snapshot

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences

inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/mmbr.69.3.440-461.2005openalex-snapshot

Fate of Heterotrophic Microbes in Pelagic Habitats: Focus on Populations

inferredcites →https://doi.org/10.1186/1471-2105-11-152openalex-snapshot

Alignment and clustering of phylogenetic markers - implications for microbial diversity studies

inferredcites →https://doi.org/10.1186/1742-9994-5-12openalex-snapshot

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

inferredcites →https://doi.org/10.1371/journal.pbio.1002352openalex-snapshot

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0095567openalex-snapshot

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

inferredcites →https://doi.org/10.1371/journal.pone.0102451openalex-snapshot

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

inferredcites →https://doi.org/10.1371/journal.pone.0116955openalex-snapshot

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

inferredcites →https://doi.org/10.3354/meps10391openalex-snapshot

Bacteria appear to play important roles in both causing and preventing the bleaching of the coral Oculina patagonica

inferredcites →https://doi.org/10.3389/fmicb.2014.00219openalex-snapshot

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

inferredcites →https://doi.org/10.3389/fmicb.2015.00731openalex-snapshot

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00374-026-02033-4openalex-snapshot

Climate and temporal variation in bacterial and fungal communities of the rhizosphere and roots of young avocado trees

inferred← citeshttps://doi.org/10.1007/s11104-025-07798-5openalex-snapshot

Microbiome responses to natural Fusarium infection in field-grown soybean plants

inferred← citeshttps://doi.org/10.1016/j.jare.2019.03.006openalex-snapshot

What is new and relevant for sequencing-based microbiome research? A mini-review

inferred← citeshttps://doi.org/10.1038/s41396-020-0665-8openalex-snapshot

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves

inferred← citeshttps://doi.org/10.1038/s41564-023-01502-yopenalex-snapshot

Obligate biotroph downy mildew consistently induces near-identical protective microbiomes in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1094/pbiomes-07-20-0055-ropenalex-snapshot

Comparing DNA Extraction and 16S rRNA Gene Amplification Methods for Plant-Associated Bacterial Communities

inferred← citeshttps://doi.org/10.1094/pbiomes-5-2openalex-snapshot

Full Issue PDF

inferred← citeshttps://doi.org/10.1101/2020.05.19.103937openalex-snapshot

Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition

inferred← citeshttps://doi.org/10.1101/2023.03.14.532520openalex-snapshot

Congruent downy mildew-associated microbiomes reduce plant disease and function as transferable resistobiomes

inferred← citeshttps://doi.org/10.1101/2023.07.27.549298openalex-snapshot

Seed tuber imprinting shapes the next-generation potato microbiome

inferred← citeshttps://doi.org/10.1101/685164openalex-snapshot

Higher stochasticity of microbiota composition in seedlings of domesticated wheat compared to wild wheat

inferred← citeshttps://doi.org/10.1128/mbio.02637-20openalex-snapshot

Seed-Derived Microbial Colonization of Wild Emmer and Domesticated Bread Wheat ( Triticum dicoccoides and T. aestivum ) Seedlings Shows Pronounced Differences in Overall Diversity and Composition

inferred← citeshttps://doi.org/10.1186/s40793-024-00553-wopenalex-snapshot

Seed tuber imprinting shapes the next-generation potato microbiome

inferred← citeshttps://doi.org/10.7554/elife.28715openalex-snapshot

Antimicrobial peptide expression in a wild tobacco plant reveals the limits of host-microbe-manipulations in the field

inferred← citeshttps://doi.org/10.7554/elife.66186openalex-snapshot

Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition

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