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Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease
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Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting
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Comprehensive Integration of Single-Cell Data
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Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner
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The Molecular Signatures Database Hallmark Gene Set Collection
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The Notch ligand DNER regulates macrophage IFNγ release in chronic obstructive pulmonary disease
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Tissue-Resident Macrophages Self-Maintain Locally throughout Adult Life with Minimal Contribution from Circulating Monocytes
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Tumor-Associated Macrophages: From Mechanisms to Therapy
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Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species
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Immunology Driven by Large-Scale Single-Cell Sequencing
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Chronic obstructive pulmonary disease
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Global, regional, and national age-sex-specific mortality for 282 causes of death in 195 countries and territories, 1980–2017: a systematic analysis for the Global Burden of Disease Study 2017
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COPD beyond smoking: new paradigm, novel opportunities
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Gene Ontology: tool for the unification of biology
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Dimensionality reduction for visualizing single-cell data using UMAP
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Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signalling
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Massively parallel digital transcriptional profiling of single cells
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SCENIC: single-cell regulatory network inference and clustering
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Chronic obstructive pulmonary disease
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SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells
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Senescent cells evade immune clearance via HLA-E-mediated NK and CD8+ T cell inhibition
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Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the mouse lung
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Functional interpretation of single cell similarity maps
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muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
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Pulmonary alveolar proteinosis
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A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
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A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
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Single-cell reconstruction of the early maternal–fetal interface in humans
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Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
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Influenza-induced monocyte-derived alveolar macrophages confer prolonged antibacterial protection
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Phenotype molding of stromal cells in the lung tumor microenvironment
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A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring
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A cellular census of human lungs identifies novel cell states in health and in asthma
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Deep generative modeling for single-cell transcriptomics
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NicheNet: modeling intercellular communication by linking ligands to target genes
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Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
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Mitochondrial dysfunction increases pro-inflammatory cytokine production and impairs repair and corticosteroid responsiveness in lung epithelium
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Limb proportions show developmental plasticity in response to embryo movement
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Pulmonary Lipid-Laden Macrophages and Vaping
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Susceptibility to Exacerbation in Chronic Obstructive Pulmonary Disease
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Update on the Pathogenesis of Chronic Obstructive Pulmonary Disease
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Update on Clinical Aspects of Chronic Obstructive Pulmonary Disease
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Hemoglobin induction in mouse macrophages
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Association of Transcription Factor YY1 with the High Molecular Weight Notch Complex Suppresses the Transactivation Activity of Notch
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Alveolar Macrophages as Orchestrators of COPD
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The Role of Oxidative Stress in Chronic Obstructive Pulmonary Disease
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UpSetR: an R package for the visualization of intersecting sets and their properties
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The CBF1-independent Notch1 signal pathway activates human c-myc expression partially via transcription factor YY1
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Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae
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g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments
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PID: The Pathway Interaction Database
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The Reactome pathway Knowledgebase
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WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
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The Reactome Pathway Knowledgebase
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The Gene Ontology Resource: 20 years and still GOing strong
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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway
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Deep learning does not outperform classical machine learning for cell-type annotation
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Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration
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The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging
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A molecular cell atlas of the human lung from single cell RNA sequencing
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GENCODE: The reference human genome annotation for The ENCODE Project
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Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
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Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
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Statin use and exacerbations in individuals with chronic obstructive pulmonary disease
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Alveolar macrophage dysfunction in malignant lung tumours.
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The Myeloid Cell Compartment—Cell by Cell
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Senescence in COPD and Its Comorbidities
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Dysregulated Functions of Lung Macrophage Populations in COPD
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Reactive Oxygen Species in Chronic Obstructive Pulmonary Disease
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Tumor-Infiltrating Myeloid Cells Activate Dll4/Notch/TGF-β Signaling to Drive Malignant Progression
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Heterogeneity of Lung Mononuclear Phagocytes in Chronic Obstructive Pulmonary Disease
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Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models
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Inflammation in Bronchial Biopsies of Subjects With Chronic Bronchitis: Inverse Relationship of CD8+ T Lymphocytes With FEV1
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Transforming Growth Factor β1 and Recruitment of Macrophages and Mast Cells in Airways in Chronic Obstructive Pulmonary Disease
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An Official American Thoracic Society Clinical Practice Guideline: The Clinical Utility of Bronchoalveolar Lavage Cellular Analysis in Interstitial Lung Disease
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Impairment of Immunoproteasome Function by Cigarette Smoke and in Chronic Obstructive Pulmonary Disease
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Reduced Frizzled Receptor 4 Expression Prevents WNT/β-Catenin–driven Alveolar Lung Repair in Chronic Obstructive Pulmonary Disease
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Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
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Dendritic Cells and Their Precursors Isolated from Human Bronchoalveolar Lavage: Immunocytologic and Functional Properties
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Monocyte Recruitment into the Lungs in Pneumococcal Pneumonia
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Cigarette Smoke-Induced Changes to Alveolar Macrophage Phenotype and Function Are Improved by Treatment with Procysteine
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Site of Mitochondrial Reactive Oxygen Species Production in Skeletal Muscle of Chronic Obstructive Pulmonary Disease and Its Relationship with Exercise Oxidative Stress
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Flow Cytometry Reveals Similarities Between Lung Macrophages in Humans and Mice
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Genetic Association and Risk Scores in a Chronic Obstructive Pulmonary Disease Meta-analysis of 16,707 Subjects
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Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression
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mTOR pathway activation drives lung cell senescence and emphysema
inferredcites →https://doi.org/10.1182/blood-2006-08-039883openalex-snapshot
Notch signals positively regulate activity of the mTOR pathway in T-cell acute lymphoblastic leukemia
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Cryopreservation of human granulocytes: study of granulocyte function and ultrastructure
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Defective macrophage phagocytosis of bacteria in COPD
inferredcites →https://doi.org/10.1183/09031936.05.00055705openalex-snapshot
Guidelines for the management of adult lower respiratory tract infections
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Global burden of COPD: systematic review and meta-analysis
inferredcites →https://doi.org/10.1183/13993003.01641-2019openalex-snapshot
Mitochondrial dysfunction in macrophages: a key to defective bacterial phagocytosis in COPD
inferredcites →https://doi.org/10.1183/13993003.02441-2018openalex-snapshot
Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis
inferredcites →https://doi.org/10.1183/16000617.0040-2017openalex-snapshot
Is mitochondrial dysfunction a driving mechanism linking COPD to nonsmall cell lung carcinoma?
inferredcites →https://doi.org/10.1183/23120541.00132-2017openalex-snapshot
COPD: time to improve its taxonomy?
inferredcites →https://doi.org/10.1186/1465-9921-12-34openalex-snapshot
Smoking status and anti-inflammatory macrophages in bronchoalveolar lavage and induced sputum in COPD
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GSVA: gene set variation analysis for microarray and RNA-Seq data
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An expression atlas of human primary cells: inference of gene function from coexpression networks
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Alveolar macrophages lack CCR2 expression and do not migrate to CCL2
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Single-cell genomics: coming of age
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SCANPY: large-scale single-cell gene expression data analysis
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PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
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A comparison of automatic cell identification methods for single-cell RNA sequencing data
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scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
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scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
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Opportunities and challenges in long-read sequencing data analysis
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Targeted PPARγ deficiency in alveolar macrophages disrupts surfactant catabolism
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ABCG1 regulates pulmonary surfactant metabolism in mice and men
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Structure and Function of Nonmammalian Vertebrate Lungs
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Permutation Methods: A Basis for Exact Inference
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Genome-Wide Joint Meta-Analysis of SNP and SNP-by-Smoking Interaction Identifies Novel Loci for Pulmonary Function
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Characterization and Quantification of Innate Lymphoid Cell Subsets in Human Lung
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Mitochondrial Dysfunction as a Pathogenic Mediator of Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis
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Systemic Effects of Chronic Obstructive Pulmonary Disease
inferredcites →https://doi.org/10.1513/pats.200605-124sfopenalex-snapshot
Role of Lung Maintenance Program in the Heterogeneity of Lung Destruction in Emphysema
inferredcites →https://doi.org/10.15252/msb.20188746openalex-snapshot
Current best practices in single‐cell RNA‐seq analysis: a tutorial
inferredcites →https://doi.org/10.21105/joss.00861openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection
inferredcites →https://doi.org/10.2147/copd.2006.1.1.39openalex-snapshot
Eosinophilic airway inflammation in COPD
inferredcites →https://doi.org/10.2147/copd.s163795openalex-snapshot
COPD affects worker productivity and health care costs
inferredcites →https://doi.org/10.2147/copd.s205382openalex-snapshot
New insights into early intervention of chronic obstructive pulmonary disease with mild airflow limitation
inferredcites →https://doi.org/10.2500/aap.2015.36.3812openalex-snapshot
Burden of chronic obstructive pulmonary disease: Healthcare costs and beyond
inferredcites →https://doi.org/10.3389/fimmu.2019.01158openalex-snapshot
Downregulation of MHC Class I Expression by Influenza A and B Viruses
inferredcites →https://doi.org/10.3389/fphar.2017.00512openalex-snapshot
Role of Proteases in Chronic Obstructive Pulmonary Disease
inferredcites →https://doi.org/10.3390/jcm6020021openalex-snapshot
Oxidative Stress in COPD: Sources, Markers, and Potential Mechanisms
inferredcites →https://doi.org/10.48550/arxiv.1802.03426openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
inferredcites →https://doi.org/10.5858/arpa.2015-0455-rsopenalex-snapshot
The Pathology of Chronic Obstructive Pulmonary Disease: Progress in the 20th and 21st Centuries
inferredcites →https://doi.org/10.7554/elife.27041.011openalex-snapshot
Author response: The Human Cell Atlas
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/b978-0-08-102723-3.00242-0openalex-snapshot
Bacterial Colonization in COPD
inferred← citeshttps://doi.org/10.1038/s41423-022-00946-2openalex-snapshot
Surfactant protein D inhibits lipid-laden foamy macrophages and lung inflammation in chronic obstructive pulmonary disease
inferred← citeshttps://doi.org/10.1038/s41467-021-26777-9openalex-snapshot
Epigenetic reprogramming of airway macrophages promotes polarization and inflammation in muco-obstructive lung disease
inferred← citeshttps://doi.org/10.1038/s41467-022-28809-4openalex-snapshot
The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD
inferred← citeshttps://doi.org/10.1038/s41598-021-91742-xopenalex-snapshot
Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes
inferred← citeshttps://doi.org/10.1080/17512433.2021.1925537openalex-snapshot
Classes of drugs that target the cellular components of inflammation under clinical development for COPD
inferred← citeshttps://doi.org/10.1101/2021.03.21.436363openalex-snapshot
Application of high dimensional flow cytometry and unsupervised analysis to define the immune cell landscape of early childhood respiratory and blood compartments
inferred← citeshttps://doi.org/10.1183/20734735.0080-2021openalex-snapshot
Highlights of the ERS Lung Science Conference and Sleep and Breathing Conference 2021 and the new ECMC members
inferred← citeshttps://doi.org/10.1186/s12931-022-02293-2openalex-snapshot
Single-cell transcriptomics highlights immunological dysregulations of monocytes in the pathobiology of COPD
inferred← citeshttps://doi.org/10.1186/s12989-022-00483-wopenalex-snapshot
Single-cell transcriptomics reveals immune dysregulation mediated by IL-17A in initiation of chronic lung injuries upon real-ambient particulate matter exposure
inferred← citeshttps://doi.org/10.1371/journal.pone.0322538openalex-snapshot
scRNA-seq and scATAC-seq analyses highlight the role of TNF signaling pathway in chronic obstructive pulmonary disease model mice
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3965602/v1openalex-snapshot
scRNA-seq and scATAC-seq analyses highlight the role of TNF signaling in chronic obstructive pulmonary disease progression
inferred← citeshttps://doi.org/10.3389/fimmu.2021.733217openalex-snapshot
Mapping Pulmonary and Systemic Inflammation in Preschool Aged Children With Cystic Fibrosis
inferred← citeshttps://doi.org/10.3389/fimmu.2021.788705openalex-snapshot
DNA Methylation Profiles of Purified Cell Types in Bronchoalveolar Lavage: Applications for Mixed Cell Paediatric Pulmonary Studies
inferred← citeshttps://doi.org/10.3390/biomedicines8100398openalex-snapshot
Abundance of Non-Polarized Lung Macrophages with Poor Phagocytic Function in Chronic Obstructive Pulmonary Disease (COPD)
inferred← citeshttps://doi.org/10.5772/intechopen.102420openalex-snapshot
Lung Macrophages: Pivotal Immune Effector Cells Orchestrating Acute and Chronic Lung Diseases
inferred← citeshttps://doi.org/10.70675/fddace61zeaf6z49a7zbc1fzb7b3ddd6f261openalex-snapshot
Lung responses to radiation injury at the single cell level
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