On the public citation graph

Can the microbiome influence host evolutionary trajectories?

https://doi.org/10.1101/700237
0 signed · 178 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00248-016-0878-6openalex-snapshot
Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy
inferredcites →https://doi.org/10.1007/s10886-013-0313-0openalex-snapshot
Bacteria Associated with a Tree-Killing Insect Reduce Concentrations of Plant Defense Compounds
inferredcites →https://doi.org/10.1016/0024-3795(73)90023-2openalex-snapshot
Hadamard products and multivariate statistical analysis
inferredcites →https://doi.org/10.1016/b978-0-12-409548-9.10548-2openalex-snapshot
Eco-Evolutionary Dynamics
inferredcites →https://doi.org/10.1016/j.cell.2014.09.053openalex-snapshot
Human Genetics Shape the Gut Microbiome
inferredcites →https://doi.org/10.1016/j.cell.2016.04.008openalex-snapshot
Temporal Stability of the Human Skin Microbiome
inferredcites →https://doi.org/10.1016/j.cell.2018.02.015openalex-snapshot
Multiscale Evolutionary Dynamics of Host-Associated Microbiomes
inferredcites →https://doi.org/10.1016/j.cell.2018.10.029openalex-snapshot
US Immigration Westernizes the Human Gut Microbiome
inferredcites →https://doi.org/10.1016/j.chom.2015.10.009openalex-snapshot
Individual Members of the Microbiota Disproportionately Modulate Host Innate Immune Responses
inferredcites →https://doi.org/10.1016/j.chom.2016.04.017openalex-snapshot
Genetic Determinants of the Gut Microbiome in UK Twins
inferredcites →https://doi.org/10.1016/j.chom.2018.06.001openalex-snapshot
Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis
inferredcites →https://doi.org/10.1016/j.chom.2018.06.007openalex-snapshot
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
inferredcites →https://doi.org/10.1016/j.cmet.2011.07.012openalex-snapshot
Lactobacillus plantarum Promotes Drosophila Systemic Growth by Modulating Hormonal Signals through TOR-Dependent Nutrient Sensing
inferredcites →https://doi.org/10.1016/j.isci.2018.06.004openalex-snapshot
Microbial Quantity Impacts Drosophila Nutrition, Development, and Lifespan
inferredcites →https://doi.org/10.1016/j.mib.2016.04.010openalex-snapshot
Are you my symbiont? Microbial polymorphic toxins and antimicrobial compounds as honest signals of beneficial symbiotic defensive traits
inferredcites →https://doi.org/10.1016/j.pt.2011.05.001openalex-snapshot
Microbiome influences on insect host vector competence
inferredcites →https://doi.org/10.1016/j.tig.2008.12.004openalex-snapshot
Estimating the size of the bacterial pan-genome
inferredcites →https://doi.org/10.1016/j.tig.2018.06.004openalex-snapshot
Experimental Studies of Evolutionary Dynamics in Microbes
inferredcites →https://doi.org/10.1016/j.tim.2015.07.009openalex-snapshot
Engineering Microbiomes to Improve Plant and Animal Health
inferredcites →https://doi.org/10.1016/j.tim.2015.12.010openalex-snapshot
Managing Amphibian Disease with Skin Microbiota
inferredcites →https://doi.org/10.1016/j.tim.2017.02.014openalex-snapshot
Symbiont Acquisition and Replacement as a Source of Ecological Innovation
inferredcites →https://doi.org/10.1016/j.tree.2009.11.001openalex-snapshot
The future of coral reefs: a microbial perspective
inferredcites →https://doi.org/10.1016/j.tree.2011.01.009openalex-snapshot
Why intraspecific trait variation matters in community ecology
inferredcites →https://doi.org/10.1016/j.tree.2016.03.006openalex-snapshot
Gut Microbiotas and Host Evolution: Scaling Up Symbiosis
inferredcites →https://doi.org/10.1016/j.tree.2016.06.008openalex-snapshot
Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?
inferredcites →https://doi.org/10.1016/j.tree.2018.08.010openalex-snapshot
The Extended Genotype: Microbially Mediated Olfactory Communication
inferredcites →https://doi.org/10.1016/j.tree.2018.09.002openalex-snapshot
Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology
inferredcites →https://doi.org/10.1016/j.tree.2018.12.010openalex-snapshot
The Extended Genotype: To What Extent? A Comment on Carthey et al.
inferredcites →https://doi.org/10.1016/j.tree.2019.01.001openalex-snapshot
Microbial Genomes as Extension Packs for Macroorganismal Diversity: A Reply to Morimoto and Baltrus
inferredcites →https://doi.org/10.1016/j.zool.2018.02.004openalex-snapshot
Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?
inferredcites →https://doi.org/10.1038/hdy.2014.86openalex-snapshot
Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
inferredcites →https://doi.org/10.1038/hdy.2015.85openalex-snapshot
Erratum: Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
inferredcites →https://doi.org/10.1038/ismej.2007.106openalex-snapshot
Stress tolerance in plants via habitat-adapted symbiosis
inferredcites →https://doi.org/10.1038/ismej.2014.116openalex-snapshot
Water fleas require microbiota for survival, growth and reproduction
inferredcites →https://doi.org/10.1038/ismej.2014.196openalex-snapshot
Selection on soil microbiomes reveals reproducible impacts on plant function
inferredcites →https://doi.org/10.1038/ismej.2017.66openalex-snapshot
Microbial contributions to the persistence of coral reefs
inferredcites →https://doi.org/10.1038/nature09352openalex-snapshot
Genome-wide analysis of a long-term evolution experiment with Drosophila
inferredcites →https://doi.org/10.1038/nature11550openalex-snapshot
Diversity, stability and resilience of the human gut microbiota
inferredcites →https://doi.org/10.1038/nature12820openalex-snapshot
Diet rapidly and reproducibly alters the human gut microbiome
inferredcites →https://doi.org/10.1038/nature18285openalex-snapshot
Accounting for reciprocal host–microbiome interactions in experimental science
inferredcites →https://doi.org/10.1038/nature25973openalex-snapshot
Environment dominates over host genetics in shaping human gut microbiota
inferredcites →https://doi.org/10.1038/ncomms14213openalex-snapshot
Bacterial community dynamics are linked to patterns of coral heat tolerance
inferredcites →https://doi.org/10.1038/ncomms8618openalex-snapshot
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee
inferredcites →https://doi.org/10.1038/ng.3707openalex-snapshot
The gut microbiome—an emerging complex trait
inferredcites →https://doi.org/10.1038/nm.4517openalex-snapshot
Current understanding of the human microbiome
inferredcites →https://doi.org/10.1038/nrg1088openalex-snapshot
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
inferredcites →https://doi.org/10.1038/nrg1877openalex-snapshot
A framework for community and ecosystem genetics: from genes to ecosystems
inferredcites →https://doi.org/10.1038/nrg2031openalex-snapshot
The co-evolutionary genetics of ecological communities
inferredcites →https://doi.org/10.1038/nrg3182openalex-snapshot
The human microbiome: at the interface of health and disease
inferredcites →https://doi.org/10.1038/nrg3982openalex-snapshot
Eco-Evo-Devo: developmental symbiosis and developmental plasticity as evolutionary agents
inferredcites →https://doi.org/10.1038/nrgastro.2017.173openalex-snapshot
Role of priority effects in the early-life assembly of the gut microbiota
inferredcites →https://doi.org/10.1038/nrmicro.2016.43openalex-snapshot
Gut microbial communities of social bees
inferredcites →https://doi.org/10.1038/nrmicro.2017.87openalex-snapshot
Embracing the unknown: disentangling the complexities of the soil microbiome
inferredcites →https://doi.org/10.1038/nrmicro1635openalex-snapshot
The role of microorganisms in coral health, disease and evolution
inferredcites →https://doi.org/10.1038/nrmicro2245openalex-snapshot
What are the consequences of the disappearing human microbiota?
inferredcites →https://doi.org/10.1038/nrmicro2262openalex-snapshot
A complex journey: transmission of microbial symbionts
inferredcites →https://doi.org/10.1038/nrmicro2540openalex-snapshot
Unravelling the effects of the environment and host genotype on the gut microbiome
inferredcites →https://doi.org/10.1038/s41396-017-0021-9openalex-snapshot
Infection dynamics of insecticide-degrading symbionts from soil to insects in response to insecticide spraying
inferredcites →https://doi.org/10.1038/s41477-018-0139-4openalex-snapshot
Core microbiomes for sustainable agroecosystems
inferredcites →https://doi.org/10.1038/s41559-017-0340-2openalex-snapshot
The microbiome beyond the horizon of ecological and evolutionary theory
inferredcites →https://doi.org/10.1038/s41564-017-0084-4openalex-snapshot
Metatranscriptome of human faecal microbial communities in a cohort of adult men
inferredcites →https://doi.org/10.1038/s41564-018-0189-4openalex-snapshot
Defining microbiome function
inferredcites →https://doi.org/10.1038/s41579-018-0029-9openalex-snapshot
Best practices for analysing microbiomes
inferredcites →https://doi.org/10.1046/j.1439-0388.2002.00356.xopenalex-snapshot
Genetics and Analysis of Quantitative Traits
inferredcites →https://doi.org/10.1073/pnas.1100304108openalex-snapshot
Evolutionary transitions in bacterial symbiosis
inferredcites →https://doi.org/10.1073/pnas.1200231109openalex-snapshot
Symbiont-mediated insecticide resistance
inferredcites →https://doi.org/10.1073/pnas.1202319109openalex-snapshot
Rapid responses of soil microorganisms improve plant fitness in novel environments
inferredcites →https://doi.org/10.1073/pnas.1218525110openalex-snapshot
Animals in a bacterial world, a new imperative for the life sciences
inferredcites →https://doi.org/10.1073/pnas.1319284111openalex-snapshot
Relating the metatranscriptome and metagenome of the human gut
inferredcites →https://doi.org/10.1073/pnas.1400378111openalex-snapshot
Host adaptation to viruses relies on few genes with different cross-resistance properties
inferredcites →https://doi.org/10.1073/pnas.1421388112openalex-snapshot
Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole
inferredcites →https://doi.org/10.1073/pnas.1423854112openalex-snapshot
Identifying personal microbiomes using metagenomic codes
inferredcites →https://doi.org/10.1073/pnas.1707186114openalex-snapshot
Caterpillars lack a resident gut microbiome
inferredcites →https://doi.org/10.1073/pnas.1717308115openalex-snapshot
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria
inferredcites →https://doi.org/10.1073/pnas.1800918115openalex-snapshot
Large-scale replicated field study of maize rhizosphere identifies heritable microbes
inferredcites →https://doi.org/10.1086/688926openalex-snapshot
Developmental and Ecological Benefits of the Maternally Transmitted Microbiota in a Dung Beetle
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/icb/icx013openalex-snapshot
An Introductory “How-to” Guide for Incorporating Microbiome Research into Integrative and Comparative Biology
inferredcites →https://doi.org/10.1093/molbev/msv136openalex-snapshot
Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1093/molbev/msx254openalex-snapshot
Genome-Wide Analysis of Starvation-Selected Drosophila melanogaster—A Genetic Model of Obesity
inferredcites →https://doi.org/10.1093/molbev/msy078openalex-snapshot
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
inferredcites →https://doi.org/10.1098/rsfs.2017.0001openalex-snapshot
Extended genomes: symbiosis and evolution
inferredcites →https://doi.org/10.1098/rspb.2013.2303openalex-snapshot
Genomic changes under rapid evolution: selection for parasitoid resistance
inferredcites →https://doi.org/10.1098/rspb.2013.2475openalex-snapshot
Predicting pre-Columbian anthropogenic soils in Amazonia
inferredcites →https://doi.org/10.1098/rspb.2014.2957openalex-snapshot
An out-of-body experience: the extracellular dimension for the transmission of mutualistic bacteria in insects
inferredcites →https://doi.org/10.1098/rspb.2019.0431openalex-snapshot
Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species
inferredcites →https://doi.org/10.1101/232959openalex-snapshot
High-dimensional microbiome interactions shape host fitness
inferredcites →https://doi.org/10.1101/cshperspect.a016113openalex-snapshot
Symbiosis as a General Principle in Eukaryotic Evolution
inferredcites →https://doi.org/10.1101/cshperspect.a018069openalex-snapshot
Not So Simple After All: Bacteria, Their Population Genetics, and Recombination
inferredcites →https://doi.org/10.1101/gr.216242.116openalex-snapshot
Microbial strain-level population structure and genetic diversity from metagenomes
inferredcites →https://doi.org/10.1111/1365-2656.12709openalex-snapshot
The microbiota of diapause: How host–microbe associations are formed after dormancy in an aquatic crustacean
inferredcites →https://doi.org/10.1111/1365-2664.12757openalex-snapshot
Efficacy of a probiotic bacterium to treat bats affected by the disease white‐nose syndrome
inferredcites →https://doi.org/10.1111/1462-2920.12841openalex-snapshot
Inoculation of tannin‐degrading bacteria into novel hosts increases performance on tannin‐rich diets
inferredcites →https://doi.org/10.1111/1758-2229.12418openalex-snapshot
The effects of host age and spatial location on bacterial community composition in the English Oak tree ( Quercus robur )
inferredcites →https://doi.org/10.1111/ele.12276openalex-snapshot
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
inferredcites →https://doi.org/10.1111/ele.12329openalex-snapshot
Gut microbes of mammalian herbivores facilitate intake of plant toxins
inferredcites →https://doi.org/10.1111/evo.12292openalex-snapshot
EXPLAINING MUTUALISM VARIATION: A NEW EVOLUTIONARY PARADOX?
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05673.xopenalex-snapshot
Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles
inferredcites →https://doi.org/10.1111/j.1461-0248.2012.01853.xopenalex-snapshot
How to assemble a beneficial microbiome in three easy steps
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01710.xopenalex-snapshot
GENOMIC BASIS OF AGING AND LIFE-HISTORY EVOLUTION IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00123.xopenalex-snapshot
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
inferredcites →https://doi.org/10.1111/mec.14186openalex-snapshot
Gut microbiota of the pine weevil degrades conifer diterpenes and increases insect fitness
inferredcites →https://doi.org/10.1111/mec.14434openalex-snapshot
Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome
inferredcites →https://doi.org/10.1111/mec.14529openalex-snapshot
Functional biogeography and host specificity of bacterial communities associated with the Marine Green Alga Ulva spp.
inferredcites →https://doi.org/10.1111/mec.14532openalex-snapshot
The ecosystem services of animal microbiomes
inferredcites →https://doi.org/10.1111/tpj.14170openalex-snapshot
Genome‐wide association studies on the phyllosphere microbiome: Embracing complexity in host–microbe interactions
inferredcites →https://doi.org/10.1126/sciadv.1700585openalex-snapshot
Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector
inferredcites →https://doi.org/10.1126/science.1072191openalex-snapshot
AGTR2 Mutations in X-Linked Mental Retardation
inferredcites →https://doi.org/10.1126/science.1078055openalex-snapshot
Thermotolerance Generated by Plant/Fungal Symbiosis
inferredcites →https://doi.org/10.1126/science.1212782openalex-snapshot
Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling
inferredcites →https://doi.org/10.1126/science.aar6918openalex-snapshot
The microbiome in cancer immunotherapy: Diagnostic tools and therapeutic strategies
inferredcites →https://doi.org/10.1128/aem.00216-16openalex-snapshot
Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula
inferredcites →https://doi.org/10.1128/aem.00358-11openalex-snapshot
Specific Developmental Window for Establishment of an Insect-Microbe Gut Symbiosis
inferredcites →https://doi.org/10.1128/aem.02627-17openalex-snapshot
The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies
inferredcites →https://doi.org/10.1128/aem.02742-13openalex-snapshot
Interspecies Interactions Determine the Impact of the Gut Microbiota on Nutrient Allocation in Drosophila melanogaster
inferredcites →https://doi.org/10.1128/aem.03742-13openalex-snapshot
The Gastrointestinal Tract of the White-Throated Woodrat (Neotoma albigula) Harbors Distinct Consortia of Oxalate-Degrading Bacteria
inferredcites →https://doi.org/10.1128/mbio.01012-14openalex-snapshot
Metatranscriptomics of the Human Oral Microbiome during Health and Disease
inferredcites →https://doi.org/10.1128/mbio.01631-14openalex-snapshot
Metagenome-Wide Association of Microbial Determinants of Host Phenotype in Drosophila melanogaster
inferredcites →https://doi.org/10.1128/mbio.02099-15openalex-snapshot
Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts
inferredcites →https://doi.org/10.1128/msystems.00028-16openalex-snapshot
Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes
inferredcites →https://doi.org/10.1128/msystems.00164-16openalex-snapshot
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145039openalex-snapshot
Microbially Mediated Plant Functional Traits
inferredcites →https://doi.org/10.1146/annurev-ecolsys-121415-032238openalex-snapshot
The Phyllosphere: Microbial Jungle at the Plant–Climate Interface
inferredcites →https://doi.org/10.1146/annurev-micro-102215-095440openalex-snapshot
Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems
inferredcites →https://doi.org/10.1146/annurev.es.20.110189.001341openalex-snapshot
Phenotypic Plasticity And The Origins Of Diversity
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/s12864-016-2556-yopenalex-snapshot
Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system
inferredcites →https://doi.org/10.1186/s12864-017-3485-0openalex-snapshot
Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster
inferredcites →https://doi.org/10.1186/s40168-015-0094-5openalex-snapshot
The vocabulary of microbiome research: a proposal
inferredcites →https://doi.org/10.1186/s40168-018-0457-9openalex-snapshot
The hologenome concept of evolution after 10 years
inferredcites →https://doi.org/10.1371/journal.pbio.1001631openalex-snapshot
Mom Knows Best: The Universality of Maternal Microbial Transmission
inferredcites →https://doi.org/10.1371/journal.pbio.1002226openalex-snapshot
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
inferredcites →https://doi.org/10.1371/journal.pbio.1002311openalex-snapshot
The Hologenome Concept: Helpful or Hollow?
inferredcites →https://doi.org/10.1371/journal.pbio.1002352openalex-snapshot
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
inferredcites →https://doi.org/10.1371/journal.pbio.2003962openalex-snapshot
Design of synthetic bacterial communities for predictable plant phenotypes
inferredcites →https://doi.org/10.1371/journal.pbio.3000102openalex-snapshot
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
inferredcites →https://doi.org/10.1371/journal.pcbi.1002358openalex-snapshot
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
inferredcites →https://doi.org/10.1371/journal.pgen.1004527openalex-snapshot
Genome-Wide Patterns of Genetic Variation within and among Alternative Selective Regimes
inferredcites →https://doi.org/10.1371/journal.pgen.1007580openalex-snapshot
Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows
inferredcites →https://doi.org/10.1371/journal.pone.0121329openalex-snapshot
Bacteria Isolated from Bats Inhibit the Growth of Pseudogymnoascus destructans, the Causative Agent of White-Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0170332openalex-snapshot
Drosophila Genotype Influences Commensal Bacterial Levels
inferredcites →https://doi.org/10.1515/9781400883080openalex-snapshot
Eco-evolutionary Dynamics
inferredcites →https://doi.org/10.1534/genetics.117.200782openalex-snapshot
Host Genome Influence on Gut Microbial Composition and Microbial Prediction of Complex Traits in Pigs
inferredcites →https://doi.org/10.1534/genetics.117.202531openalex-snapshot
Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping
inferredcites →https://doi.org/10.3389/fcimb.2012.00119openalex-snapshot
Evolution of microbes and viruses: a paradigm shift in evolutionary biology?
inferredcites →https://doi.org/10.3389/fmicb.2016.01165openalex-snapshot
The Woodrat Gut Microbiota as an Experimental System for Understanding Microbial Metabolism of Dietary Toxins
inferredcites →https://doi.org/10.3389/fmicb.2016.01444openalex-snapshot
Experimental Evolution as an Underutilized Tool for Studying Beneficial Animal–Microbe Interactions
inferredcites →https://doi.org/10.3389/fmicb.2017.00725openalex-snapshot
Evolutionary Biology Needs Wild Microbiomes
inferredcites →https://doi.org/10.3389/fmicb.2017.00802openalex-snapshot
The Hologenome Across Environments and the Implications of a Host-Associated Microbial Repertoire
inferredcites →https://doi.org/10.4137/bbi.s34610openalex-snapshot
Use of Metatranscriptomics in Microbiome Research
inferredcites →https://doi.org/10.4161/gmic.19896openalex-snapshot
Gut-associated microbes of Drosophila melanogaster
inferredcites →https://doi.org/10.7717/peerj-cs.104openalex-snapshot
Bracken: estimating species abundance in metagenomics data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-63512-1_17openalex-snapshot
Diversity–Function Relationships and the Underlying Ecological Mechanisms in Host-Associated Microbial Communities
inferred← citeshttps://doi.org/10.1016/j.tig.2022.05.008openalex-snapshot
Unraveling coevolutionary dynamics using ecological genomics
inferred← citeshttps://doi.org/10.1038/s41396-021-00940-yopenalex-snapshot
Locally adapted gut microbiomes mediate host stress tolerance
inferred← citeshttps://doi.org/10.1038/s41598-022-14769-8openalex-snapshot
Bacterial endophytes as indicators of susceptibility to Cercospora Leaf Spot (CLS) disease in Beta vulgaris L.
inferred← citeshttps://doi.org/10.1093/bib/bbaa175openalex-snapshot
Heritability jointly explained by host genotype and microbiome: will improve traits prediction?
inferred← citeshttps://doi.org/10.1098/rstb.2019.0589openalex-snapshot
Microbiome-mediated plasticity directs host evolution along several distinct time scales
inferred← citeshttps://doi.org/10.1098/rstb.2019.0590openalex-snapshot
Symbiosis and stress: how plant microbiomes affect host evolution
inferred← citeshttps://doi.org/10.1098/rstb.2019.0598openalex-snapshot
Microbial control of host gene regulation and the evolution of host–microbiome interactions in primates
inferred← citeshttps://doi.org/10.1101/2020.03.19.999078openalex-snapshot
Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/2020.09.02.280040openalex-snapshot
When the microbiome defines the host phenotype: selection on vertical transmission in varying environments
inferred← citeshttps://doi.org/10.1101/2020.09.21.306779openalex-snapshot
Host evolutionary history and ecological context modulate the adaptive potential of the microbiome
inferred← citeshttps://doi.org/10.1111/brv.12773openalex-snapshot
On the move: sloths and their epibionts as model mobile ecosystems
inferred← citeshttps://doi.org/10.1111/eva.13540openalex-snapshot
Effects of anthropogenic stress on hosts and their microbiomes: Treated wastewater alters performance and gut microbiome of a key detritivore (Asellus aquaticus)
inferred← citeshttps://doi.org/10.1111/mec.16696openalex-snapshot
Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spiderStegodyphus dumicola
inferred← citeshttps://doi.org/10.1126/science.aaz6827openalex-snapshot
The role of the microbiota in human genetic adaptation
inferred← citeshttps://doi.org/10.1128/mbio.02966-21openalex-snapshot
Honey Bee Larval and Adult Microbiome Life Stages Are Effectively Decoupled with Vertical Transmission Overcoming Early Life Perturbations
inferred← citeshttps://doi.org/10.1128/msphere.01023-20openalex-snapshot
Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly
inferred← citeshttps://doi.org/10.1146/annurev-arplant-080620-114342openalex-snapshot
Extension of Plant Phenotypes by the Foliar Microbiome
inferred← citeshttps://doi.org/10.1186/s12866-021-02168-4openalex-snapshot
Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.29105/bys8.16-189openalex-snapshot
Microbiomas:
inferred← citeshttps://doi.org/10.3389/fmars.2023.1153326openalex-snapshot
Response of intestinal microbiota to saline-alkaline water in mud crab (Scylla paramamosain) based on multiple low salinity culture modes
inferred← citeshttps://doi.org/10.3389/fmicb.2020.01845openalex-snapshot
Microbiomes and Specific Symbionts of Social Spiders: Compositional Patterns in Host Species, Populations, and Nests
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1476845openalex-snapshot
Altitude shapes gut microbiome composition accounting for diet, thyroid hormone levels, and host genetics in a subterranean blind mole rat
inferred← citeshttps://doi.org/10.3390/ani10122415openalex-snapshot
Reducing versus Embracing Variation as Strategies for Reproducibility: The Microbiome of Laboratory Mice
inferred← citeshttps://doi.org/10.3390/microorganisms12091750openalex-snapshot
Impact of Novel Foods on the Human Gut Microbiome: Current Status
inferred← citeshttps://doi.org/10.3390/neurosci5030022openalex-snapshot
Salivary Transcriptome and Mitochondrial Analysis of Autism Spectrum Disorder Children Compared to Healthy Controls
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.