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Constructing a Risk Scoring Model for Breast Cancer: Focusing on Mitochondrial Energy Metabolism and Cellular Senescence Gene Features

https://doi.org/10.2139/ssrn.4808568
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1 of the 73 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.1155/2022/9605439 (notice 2023-12-29).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Breast Cancer Treatment
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High expression of STAT3 within the tumour‐associated stroma predicts poor outcome in breast cancer patients
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Mitochondrial DNA mutations and mitochondrial DNA depletion in breast cancer
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Mitochondrial DNA mutation correlates with stage progression and prognosis in non-small cell lung cancer
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Estimating and comparing time‐dependent areas under receiver operating characteristic curves for censored event times with competing risks
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Mitochondria on Guard: Role of Mitochondrial Fusion and Fission in the Regulation of Apoptosis
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Perspectives of Reprogramming Breast Cancer Metabolism
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Mutant p53 in breast cancer: potential as a therapeutic target and biomarker
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Effects of hypoxia and HIFs on cancer metabolism
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The signals and pathways activating cellular senescence
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Distinct Functions of Senescence-Associated Immune Responses in Liver Tumor Surveillance and Tumor Progression
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Oncogene-Induced Senescence Relayed by an Interleukin-Dependent Inflammatory Network
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Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade
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The Molecular Signatures Database Hallmark Gene Set Collection
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The GenePattern Notebook Environment
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Preventing Replication Stress to Maintain Genome Stability: Resolving Conflicts between Replication and Transcription
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The Warburg effect: Insights from the past decade
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PIK3CA in cancer: The past 30 years
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Mitochondrial Dynamics and Metabolic Regulation
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clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
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Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data
inferredcites →https://doi.org/10.1038/436642aopenalex-extracted
Senescence in premalignant tumours
inferredcites →https://doi.org/10.1038/cddis.2014.513openalex-extracted
Redox control of glutamine utilization in cancer
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The role of senescent cells in ageing
inferredcites →https://doi.org/10.1038/ncb2070openalex-extracted
The matricellular protein CCN1 induces fibroblast senescence and restricts fibrosis in cutaneous wound healing
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Inferring tumour purity and stromal and immune cell admixture from expression data
inferredcites →https://doi.org/10.1038/nrc2981openalex-extracted
Regulation of cancer cell metabolism
inferredcites →https://doi.org/10.1038/nrc3365openalex-extracted
Mitochondria and cancer
inferredcites →https://doi.org/10.1038/onc.2013.457openalex-extracted
FOXM1 targets NBS1 to regulate DNA damage-induced senescence and epirubicin resistance
inferredcites →https://doi.org/10.1038/sj.onc.1207116openalex-extracted
Control of apoptosis by p53
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-extracted
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.211053698openalex-extracted
Senescent fibroblasts promote epithelial cell growth and tumorigenesis: A link between cancer and aging
inferredcites →https://doi.org/10.1074/jbc.r800011200openalex-extracted
Molecular Machinery of Mitochondrial Fusion and Fission
inferredcites →https://doi.org/10.1080/15384101.2018.1502567openalex-extracted
Targeting the cell cycle in breast cancer: towards the next phase
inferredcites →https://doi.org/10.1080/21655979.2021.2004980openalex-extracted
Lapatinib induces mitochondrial dysfunction to enhance oxidative stress and ferroptosis in doxorubicin-induced cardiomyocytes via inhibition of PI3K/AKT signaling pathway
inferredcites →https://doi.org/10.1085/jgp.8.6.519openalex-extracted
THE METABOLISM OF TUMORS IN THE BODY
inferredcites →https://doi.org/10.1093/annonc/mdy495openalex-extracted
Development of tumor mutation burden as an immunotherapy biomarker: utility for the oncology clinic
inferredcites →https://doi.org/10.1093/bioinformatics/btm254openalex-extracted
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
inferredcites →https://doi.org/10.1093/bioinformatics/btq170openalex-extracted
ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking
inferredcites →https://doi.org/10.1093/nar/gks1193openalex-extracted
NCBI GEO: archive for functional genomics data sets—update
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-extracted
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1093/nar/gky1131openalex-extracted
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
inferredcites →https://doi.org/10.1093/nar/gkz896openalex-extracted
miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database
inferredcites →https://doi.org/10.1097/md.0000000000033739openalex-extracted
A senescence-related signature for predicting the prognosis of breast cancer: A bioinformatics analysis
inferredcites →https://doi.org/10.1101/gr.1239303openalex-extracted
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1101/gr.239244.118openalex-extracted
Maftools: efficient and comprehensive analysis of somatic variants in cancer
inferredcites →https://doi.org/10.1126/science.123.3191.309openalex-extracted
On the Origin of Cancer Cells
inferredcites →https://doi.org/10.1126/science.aaa1348openalex-extracted
Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer
inferredcites →https://doi.org/10.1126/science.aaf1490openalex-extracted
Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
inferredcites →https://doi.org/10.1146/annurev-pathol-121808-102144openalex-extracted
The Senescence-Associated Secretory Phenotype: The Dark Side of Tumor Suppression
inferredcites →https://doi.org/10.1155/2015/972193openalex-extracted
Breast Cancer Metabolism and Mitochondrial Activity: The Possibility of Chemoprevention with Metformin
inferredcites →https://doi.org/10.1155/2022/9605439openalex-extracted
[Retracted] Global Increase in Breast Cancer Incidence: Risk Factors and Preventive Measures
inferredcites →https://doi.org/10.1158/1940-6207.capr-10-0073openalex-extracted
Premalignant Breast Neoplasia: A Paradigm of Interlesional and Intralesional Molecular Heterogeneity and Its Biological and Clinical Ramifications
inferredcites →https://doi.org/10.1158/2159-8290.cd-12-0095openalex-extracted
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
inferredcites →https://doi.org/10.1186/1471-2105-12-77openalex-extracted
pROC: an open-source package for R and S+ to analyze and compare ROC curves
inferredcites →https://doi.org/10.1186/1471-2105-14-7openalex-extracted
GSVA: gene set variation analysis for microarray and RNA-Seq data
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-extracted
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/1471-2407-11-143openalex-extracted
Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: implications for treatment optimization
inferredcites →https://doi.org/10.1186/1752-0509-8-s4-s11openalex-extracted
cytoHubba: identifying hub objects and sub-networks from complex interactome
inferredcites →https://doi.org/10.1186/s13058-015-0550-yopenalex-extracted
Gene-expression molecular subtyping of triple-negative breast cancer tumours: importance of immune response
inferredcites →https://doi.org/10.1186/s13058-020-01284-9openalex-extracted
Frequency and spectrum of PIK3CA somatic mutations in breast cancer
inferredcites →https://doi.org/10.1200/cci.19.00119openalex-extracted
Multiomic Integration of Public Oncology Databases in Bioconductor
inferredcites →https://doi.org/10.12688/f1000research.8923.1openalex-extracted
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
inferredcites →https://doi.org/10.1371/journal.pone.0107468openalex-extracted
pRRophetic: An R Package for Prediction of Clinical Chemotherapeutic Response from Tumor Gene Expression Levels
inferredcites →https://doi.org/10.1515/ijb-2017-0070openalex-extracted
Nonparametric bootstrap inference for the targeted highly adaptive least absolute shrinkage and selection operator (LASSO) estimator
inferredcites →https://doi.org/10.18637/jss.v033.i01openalex-extracted
Regularization Paths for Generalized Linear Models via Coordinate Descent
inferredcites →https://doi.org/10.2174/1568009615666150302130010openalex-extracted
Targeting the Spindle Assembly Checkpoint for Breast Cancer Treatment
inferredcites →https://doi.org/10.2174/1871520621999211108090712openalex-extracted
Regulation of Cell Death Mechanisms by Melatonin: Implications in Cancer Therapy
inferredcites →https://doi.org/10.3389/fimmu.2021.711433openalex-extracted
Landscape of Immune Microenvironment Under Immune Cell Infiltration Pattern in Breast Cancer
inferredcites →https://doi.org/10.3389/fonc.2023.1144430openalex-extracted
Establishment of a prognostic model for ovarian cancer based on mitochondrial metabolism-related genes
inferredcites →https://doi.org/10.3390/cells8020089openalex-extracted
Metabolic Reprogramming in Breast Cancer and Its Therapeutic Implications
inferredcites →https://doi.org/10.3748/wjg.v20.i14.3950openalex-extracted
Somatic alterations in mitochondrial DNA and mitochondrial dysfunction in gastric cancer progression
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