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Understanding the Principles of Pattern Formation Driven by Notch Signaling by Integrating Experiments and Theoretical Models

https://doi.org/10.3389/fphys.2020.00929
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Intercellular Tension Negatively Regulates Angiogenic Sprouting of Endothelial Tip Cells via Notch1‐Dll4 Signaling
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A novel vascular pattern promotes metastasis of hepatocellular carcinoma in an epithelial–mesenchymal transition–independent manner
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Mechanisms of early neurogenesis in Drosophila melanogaster
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Pattern Formation by Lateral Inhibition with Feedback: a Mathematical Model of Delta-Notch Intercellular Signalling
inferredcites →https://doi.org/10.1007/978-1-4939-8982-9_14openalex-snapshot
Quantitative Characteristic of ncRNA Regulation in Gene Regulatory Networks
inferredcites →https://doi.org/10.1007/s11538-007-9286-xopenalex-snapshot
Effects of Intrinsic and Extrinsic Noise Can Accelerate Juxtacrine Pattern Formation
inferredcites →https://doi.org/10.1007/s40778-019-0150-3openalex-snapshot
Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression
inferredcites →https://doi.org/10.1016/0092-8674(91)90263-xopenalex-snapshot
The choice of cell fate in the epidermis of Drosophila
inferredcites →https://doi.org/10.1016/0092-8674(95)90476-xopenalex-snapshot
Cell recognition, signal induction, and symmetrical gene activation at the dorsal-ventral boundary of the developing drosophila wing
inferredcites →https://doi.org/10.1016/0925-4773(94)90080-9openalex-snapshot
Roles of the Notch gene in Drosophila wing morphogenesis
inferredcites →https://doi.org/10.1016/j.ccr.2012.03.041openalex-snapshot
Lunatic Fringe Deficiency Cooperates with the Met/Caveolin Gene Amplicon to Induce Basal-like Breast Cancer
inferredcites →https://doi.org/10.1016/j.cell.2006.11.001openalex-snapshot
Cancer Metastasis: Building a Framework
inferredcites →https://doi.org/10.1016/j.cell.2008.03.027openalex-snapshot
The Epithelial-Mesenchymal Transition Generates Cells with Properties of Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2009.03.025openalex-snapshot
The Notch Ligands Dll4 and Jagged1 Have Opposing Effects on Angiogenesis
inferredcites →https://doi.org/10.1016/j.cell.2009.03.045openalex-snapshot
The Canonical Notch Signaling Pathway: Unfolding the Activation Mechanism
inferredcites →https://doi.org/10.1016/j.cell.2013.11.029openalex-snapshot
Collective Invasion in Breast Cancer Requires a Conserved Basal Epithelial Program
inferredcites →https://doi.org/10.1016/j.cell.2014.07.013openalex-snapshot
Circulating Tumor Cell Clusters Are Oligoclonal Precursors of Breast Cancer Metastasis
inferredcites →https://doi.org/10.1016/j.cell.2016.06.028openalex-snapshot
EMT: 2016
inferredcites →https://doi.org/10.1016/j.cell.2018.01.002openalex-snapshot
Dynamic Ligand Discrimination in the Notch Signaling Pathway
inferredcites →https://doi.org/10.1016/j.celrep.2015.12.040openalex-snapshot
Quantitative Analysis of Delta-like 1 Membrane Dynamics Elucidates the Role of Contact Geometry on Notch Signaling
inferredcites →https://doi.org/10.1016/j.cmet.2018.06.006openalex-snapshot
Targeting Breast Cancer Stem Cell State Equilibrium through Modulation of Redox Signaling
inferredcites →https://doi.org/10.1016/j.cub.2009.06.042openalex-snapshot
cis-Inhibition of Notch by Endogenous Delta Biases the Outcome of Lateral Inhibition
inferredcites →https://doi.org/10.1016/j.cub.2010.10.034openalex-snapshot
Mechanism and Significance of cis-Inhibition in Notch Signalling
inferredcites →https://doi.org/10.1016/j.devcel.2005.02.019openalex-snapshot
Analysis of Notch Function in Presomitic Mesoderm Suggests a γ-Secretase-Independent Role for Presenilins in Somite Differentiation
inferredcites →https://doi.org/10.1016/j.devcel.2010.06.006openalex-snapshot
Dynamic Filopodia Transmit Intermittent Delta-Notch Signaling to Drive Pattern Refinement during Lateral Inhibition
inferredcites →https://doi.org/10.1016/j.devcel.2012.04.005openalex-snapshot
Notch Ligand Endocytosis Generates Mechanical Pulling Force Dependent on Dynamin, Epsins, and Actin
inferredcites →https://doi.org/10.1016/j.devcel.2012.09.009openalex-snapshot
Single-Cell-Resolution Imaging of the Impact of Notch Signaling and Mitosis on Segmentation Clock Dynamics
inferredcites →https://doi.org/10.1016/j.devcel.2017.02.009openalex-snapshot
Cell-Cell Contact Area Affects Notch Signaling and Notch-Dependent Patterning
inferredcites →https://doi.org/10.1016/j.devcel.2017.04.001openalex-snapshot
The Canonical Notch Signaling Pathway: Structural and Biochemical Insights into Shape, Sugar, and Force
inferredcites →https://doi.org/10.1016/j.gde.2011.07.007openalex-snapshot
From Notch signaling to fine-grained patterning: Modeling meets experiments
inferredcites →https://doi.org/10.1016/j.jtbi.2007.09.015openalex-snapshot
Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation
inferredcites →https://doi.org/10.1016/j.neuron.2008.02.014openalex-snapshot
Oscillations in Notch Signaling Regulate Maintenance of Neural Progenitors
inferredcites →https://doi.org/10.1016/j.sbi.2011.08.008openalex-snapshot
Fringe benefits: Functional and structural impacts of O-glycosylation on the extracellular domain of Notch receptors
inferredcites →https://doi.org/10.1016/j.semcdb.2016.01.017openalex-snapshot
Oscillatory control of Delta-like1 in somitogenesis and neurogenesis: A unified model for different oscillatory dynamics
inferredcites →https://doi.org/10.1016/j.stem.2013.03.002openalex-snapshot
A microRNA miR-34a-Regulated Bimodal Switch Targets Notch in Colon Cancer Stem Cells
inferredcites →https://doi.org/10.1016/j.stemcr.2013.11.009openalex-snapshot
Breast Cancer Stem Cells Transition between Epithelial and Mesenchymal States Reflective of their Normal Counterparts
inferredcites →https://doi.org/10.1016/j.tcb.2018.12.001openalex-snapshot
EMT Transition States during Tumor Progression and Metastasis
inferredcites →https://doi.org/10.1016/j.ydbio.2017.09.032openalex-snapshot
Do as I say, Not(ch) as I do: Lateral control of cell fate
inferredcites →https://doi.org/10.1016/j.ydbio.2019.06.024openalex-snapshot
What are you synching about? Emerging complexity of Notch signaling in the segmentation clock
inferredcites →https://doi.org/10.1016/j.yexcr.2004.10.030openalex-snapshot
The Notch amino terminus regulates protein levels and Delta-induced clustering of Drosophila Notch receptors
inferredcites →https://doi.org/10.1016/j.yexcr.2013.01.010openalex-snapshot
Notch as a hub for signaling in angiogenesis
inferredcites →https://doi.org/10.1016/s0070-2153(10)92003-6openalex-snapshot
Canonical and Non-Canonical Notch Ligands
inferredcites →https://doi.org/10.1016/s0925-4773(98)00165-8openalex-snapshot
Distinct expression patterns of notch family receptors and ligands during development of the mammalian inner ear
inferredcites →https://doi.org/10.1016/s0959-437x(97)80083-4openalex-snapshot
Notch signalling in development: on equivalence groups and asymmetric developmental potential
inferredcites →https://doi.org/10.1016/s0959-4388(99)00020-3openalex-snapshot
Fringe: defining borders by regulating the Notch pathway
inferredcites →https://doi.org/10.1016/s0960-9822(03)00494-9openalex-snapshot
Oscillatory Expression of Hes1, p53, and NF-κB Driven by Transcriptional Time Delays
inferredcites →https://doi.org/10.1016/s0960-9822(03)00534-7openalex-snapshot
Autoinhibition with Transcriptional Delay
inferredcites →https://doi.org/10.1016/s1470-2045(07)70140-7openalex-snapshot
Active versus passive mechanisms in metastasis: do cancer cells crawl into vessels, or are they pushed?
inferredcites →https://doi.org/10.1021/acs.nanolett.6b01403openalex-snapshot
Defining Single Molecular Forces Required for Notch Activation Using Nano Yoyo
inferredcites →https://doi.org/10.1038/35002131openalex-snapshot
Construction of a genetic toggle switch in Escherichia coli
inferredcites →https://doi.org/10.1038/35019553openalex-snapshot
Fringe differentially modulates Jagged1 and Delta1 signalling through Notch1 and Notch2
inferredcites →https://doi.org/10.1038/35044091openalex-snapshot
Notch signalling and the synchronization of the somite segmentation clock
inferredcites →https://doi.org/10.1038/emboj.2010.349openalex-snapshot
The ZEB1/miR‐200 feedback loop controls Notch signalling in cancer cells
inferredcites →https://doi.org/10.1038/nature02157openalex-snapshot
Delta-promoted filopodia mediate long-range lateral inhibition in Drosophila
inferredcites →https://doi.org/10.1038/nature07854openalex-snapshot
Directional Delta and Notch trafficking in Sara endosomes during asymmetric cell division
inferredcites →https://doi.org/10.1038/nature08959openalex-snapshot
Cis-interactions between Notch and Delta generate mutually exclusive signalling states
inferredcites →https://doi.org/10.1038/nature24998openalex-snapshot
A non-canonical Notch complex regulates adherens junctions and vascular barrier function
inferredcites →https://doi.org/10.1038/nature25742openalex-snapshot
Tissue stiffening coordinates morphogenesis by triggering collective cell migration in vivo
inferredcites →https://doi.org/10.1038/ncb2103openalex-snapshot
Endothelial cells dynamically compete for the tip cell position during angiogenic sprouting
inferredcites →https://doi.org/10.1038/ncb2926openalex-snapshot
The role of differential VE-cadherin dynamics in cell rearrangement during angiogenesis
inferredcites →https://doi.org/10.1038/ncomms3299openalex-snapshot
NF-κB non-cell-autonomously regulates cancer stem cell populations in the basal-like breast cancer subtype
inferredcites →https://doi.org/10.1038/ncomms7556openalex-snapshot
Notch1–Dll4 signalling and mechanical force regulate leader cell formation during collective cell migration
inferredcites →https://doi.org/10.1038/ni.2538openalex-snapshot
Distinct TCR signaling pathways drive proliferation and cytokine production in T cells
inferredcites →https://doi.org/10.1038/nm.2537openalex-snapshot
Tumor angiogenesis: molecular pathways and therapeutic targets
inferredcites →https://doi.org/10.1038/nrc2130openalex-snapshot
The Delta paradox: DLL4 blockade leads to more tumour vessels but less tumour growth
inferredcites →https://doi.org/10.1038/nrm.2016.94openalex-snapshot
Notch signalling in context
inferredcites →https://doi.org/10.1038/nrm2009openalex-snapshot
Notch signalling: a simple pathway becomes complex
inferredcites →https://doi.org/10.1038/nrm3758openalex-snapshot
Molecular mechanisms of epithelial–mesenchymal transition
inferredcites →https://doi.org/10.1038/s41467-017-01741-8openalex-snapshot
NOTCH1 is a mechanosensor in adult arteries
inferredcites →https://doi.org/10.1038/s41467-018-05927-6openalex-snapshot
Mechanical interactions among followers determine the emergence of leaders in migrating epithelial cell collectives
inferredcites →https://doi.org/10.1038/s41467-020-14700-7openalex-snapshot
Inhibiting WNT and NOTCH in renal cancer stem cells and the implications for human patients
inferredcites →https://doi.org/10.1038/s41523-017-0023-9openalex-snapshot
Inflammatory breast cancer: a model for investigating cluster-based dissemination
inferredcites →https://doi.org/10.1038/s41586-018-0040-3openalex-snapshot
Identification of the tumour transition states occurring during EMT
inferredcites →https://doi.org/10.1038/s41586-019-1104-8openalex-snapshot
The bone marrow microenvironment at single-cell resolution
inferredcites →https://doi.org/10.1038/s41598-018-27645-1openalex-snapshot
Enhanced Delta-Notch Lateral Inhibition Model Incorporating Intracellular Notch Heterogeneity and Tension-Dependent Rate of Delta-Notch Binding that Reproduces Sprouting Angiogenesis Patterns
inferredcites →https://doi.org/10.1038/srep22707openalex-snapshot
Probing Leader Cells in Endothelial Collective Migration by Plasma Lithography Geometric Confinement
inferredcites →https://doi.org/10.1039/c3ib40095fopenalex-snapshot
Single cell gene expression analysis in injury-induced collective cell migration
inferredcites →https://doi.org/10.1039/c6cp03174aopenalex-snapshot
Quantifying the landscape and kinetic paths for epithelial–mesenchymal transition from a core circuit
inferredcites →https://doi.org/10.1039/c8ib00036kopenalex-snapshot
Shear stress induces expression, intracellular reorganization and enhanced Notch activation potential of Jagged1
inferredcites →https://doi.org/10.1046/j.1365-2133.2003.05238.xopenalex-snapshot
Reduced expression of actin-binding proteins, h-caldesmon and calponin h1, in the vascular smooth muscle inside melanoma lesions: an adverse prognostic factor for malignant melanoma
inferredcites →https://doi.org/10.1056/nejmra0706596openalex-snapshot
Tumor Angiogenesis
inferredcites →https://doi.org/10.1073/pnas.0611177104openalex-snapshot
The Notch ligand Delta-like 4 negatively regulates endothelial tip cell formation and vessel branching
inferredcites →https://doi.org/10.1073/pnas.071496998openalex-snapshot
The Notch ligand Jagged1 is required for inner ear sensory development
inferredcites →https://doi.org/10.1073/pnas.0802047105openalex-snapshot
Notch signaling mediates hypoxia-induced tumor cell migration and invasion
inferredcites →https://doi.org/10.1073/pnas.1002827107openalex-snapshot
Notch signaling specifies prosensory domains via lateral induction in the developing mammalian inner ear
inferredcites →https://doi.org/10.1073/pnas.1416287112openalex-snapshot
Jagged–Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype
inferredcites →https://doi.org/10.1073/pnas.1511814112openalex-snapshot
Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision
inferredcites →https://doi.org/10.1073/pnas.162041399openalex-snapshot
Intrinsic and extrinsic contributions to stochasticity in gene expression
inferredcites →https://doi.org/10.1073/pnas.1706920115openalex-snapshot
Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion
inferredcites →https://doi.org/10.1073/pnas.1715277115openalex-snapshot
Mechanosensitivity of Jagged–Notch signaling can induce a switch-type behavior in vascular homeostasis
inferredcites →https://doi.org/10.1073/pnas.1809964116openalex-snapshot
Energetic regulation of coordinated leader–follower dynamics during collective invasion of breast cancer cells
inferredcites →https://doi.org/10.1073/pnas.1815345116openalex-snapshot
Toward understanding cancer stem cell heterogeneity in the tumor microenvironment
inferredcites →https://doi.org/10.1073/pnas.1913373116openalex-snapshot
Pericytes enable effective angiogenesis in the presence of proinflammatory signals
inferredcites →https://doi.org/10.1073/pnas.97.22.11692openalex-snapshot
Notch signaling in the development of the inner ear: Lessons from Drosophila
inferredcites →https://doi.org/10.1074/jbc.m111.317578openalex-snapshot
Galactose Differentially Modulates Lunatic and Manic Fringe Effects on Delta1-induced NOTCH Signaling
inferredcites →https://doi.org/10.1083/jcb.200302047openalex-snapshot
VEGF guides angiogenic sprouting utilizing endothelial tip cell filopodia
inferredcites →https://doi.org/10.1083/jcb.200503113openalex-snapshot
The divergent DSL ligand Dll3 does not activate Notch signaling but cell autonomously attenuates signaling induced by other DSL ligands
inferredcites →https://doi.org/10.1083/jcb.200609014openalex-snapshot
DSL ligand endocytosis physically dissociates Notch1 heterodimers before activating proteolysis can occur
inferredcites →https://doi.org/10.1083/jcb.200710067openalex-snapshot
Slug is a direct Notch target required for initiation of cardiac cushion cellularization
inferredcites →https://doi.org/10.1088/1367-2630/17/5/055021openalex-snapshot
Operating principles of Notch–Delta–Jagged module of cell–cell communication
inferredcites →https://doi.org/10.1088/1478-3975/aaf928openalex-snapshot
Intermediate cell states in epithelial-to-mesenchymal transition
inferredcites →https://doi.org/10.1088/1478-3975/ab34dfopenalex-snapshot
A possible role for epigenetic feedback regulation in the dynamics of the epithelial–mesenchymal transition (EMT)
inferredcites →https://doi.org/10.1088/1478-3975/ac28a4openalex-snapshot
Ordered hexagonal patterns via notch–delta signaling
inferredcites →https://doi.org/10.1088/1742-5468/2009/03/p03019openalex-snapshot
Diffusible ligand and lateral inhibition dynamics for pattern formation
inferredcites →https://doi.org/10.1093/hmg/ddq529openalex-snapshot
Notch inhibition by the ligand Delta-Like 3 defines the mechanism of abnormal vertebral segmentation in spondylocostal dysostosis
inferredcites →https://doi.org/10.1093/intbio/zyz021openalex-snapshot
NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial/mesenchymal phenotype
inferredcites →https://doi.org/10.1098/rsif.2015.1106openalex-snapshot
Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype
inferredcites →https://doi.org/10.1098/rsif.2017.0512openalex-snapshot
Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling
inferredcites →https://doi.org/10.1101/859363openalex-snapshot
Cell-based simulations of Notch-dependent cell differentiation on growing domains
inferredcites →https://doi.org/10.1101/cshperspect.a029199openalex-snapshot
Tuning Collective Cell Migration by Cell–Cell Junction Regulation
inferredcites →https://doi.org/10.1101/gad.12.12.1751openalex-snapshot
LIN-12/Notch signaling: lessons from worms and flies
inferredcites →https://doi.org/10.1101/gad.270785.115openalex-snapshot
Oscillatory control of Delta-like1 in cell interactions regulates dynamic gene expression and tissue morphogenesis
inferredcites →https://doi.org/10.1109/memb.2009.931791openalex-snapshot
Multiscale models of angiogenesis
inferredcites →https://doi.org/10.1111/dgd.12016openalex-snapshot
Patterning and cell fate in the inner ear: a case for N otch in the chicken embryo
inferredcites →https://doi.org/10.1111/jcmm.14286openalex-snapshot
Role of Jagged1/ STAT 3 signalling in platinum‐resistant ovarian cancer
inferredcites →https://doi.org/10.1126/science.1074560openalex-snapshot
Oscillatory Expression of the bHLH Factor Hes1 Regulated by a Negative Feedback Loop
inferredcites →https://doi.org/10.1126/science.1104819openalex-snapshot
Normalization of Tumor Vasculature: An Emerging Concept in Antiangiogenic Therapy
inferredcites →https://doi.org/10.1126/science.1142538openalex-snapshot
Synchrony Dynamics During Initiation, Failure, and Rescue of the Segmentation Clock
inferredcites →https://doi.org/10.1126/science.1231041openalex-snapshot
Defining Single Molecular Forces Required to Activate Integrin and Notch Signaling
inferredcites →https://doi.org/10.1126/science.1261093openalex-snapshot
Structural basis for Notch1 engagement of Delta-like 4
inferredcites →https://doi.org/10.1126/science.aaf6546openalex-snapshot
A collective route to metastasis: Seeding by tumor cell clusters
inferredcites →https://doi.org/10.1126/science.aaf9739openalex-snapshot
Notch-Jagged complex structure implicates a catch bond in tuning ligand sensitivity
inferredcites →https://doi.org/10.1152/physrev.00005.2017openalex-snapshot
Notch Signaling in Development, Tissue Homeostasis, and Disease
inferredcites →https://doi.org/10.1158/0008-5472.can-08-4312openalex-snapshot
Acquisition of Epithelial-Mesenchymal Transition Phenotype of Gemcitabine-Resistant Pancreatic Cancer Cells Is Linked with Activation of the Notch Signaling Pathway
inferredcites →https://doi.org/10.1158/0008-5472.can-09-2557openalex-snapshot
NOTCH Signaling Is Required for Formation and Self-Renewal of Tumor-Initiating Cells and for Repression of Secretory Cell Differentiation in Colon Cancer
inferredcites →https://doi.org/10.1158/0008-5472.can-10-4269openalex-snapshot
Endothelial Cells Create a Stem Cell Niche in Glioblastoma by Providing NOTCH Ligands That Nurture Self-Renewal of Cancer Stem-Like Cells
inferredcites →https://doi.org/10.1161/circulationaha.111.047159openalex-snapshot
Notch Activation of Jagged1 Contributes to the Assembly of the Arterial Wall
inferredcites →https://doi.org/10.1186/1471-213x-1-13openalex-snapshot
Delta-Notch signaling and lateral inhibition in zebrafish spinal cord development
inferredcites →https://doi.org/10.1242/dev.001842openalex-snapshot
Notch signalling is needed to maintain, but not to initiate, the formation of prosensory patches in the chick inner ear
inferredcites →https://doi.org/10.1242/dev.01589openalex-snapshot
Two contrasting roles for Notch activity in chick inner ear development:specification of prosensory patches and lateral inhibition of hair-cell differentiation
inferredcites →https://doi.org/10.1242/dev.02002openalex-snapshot
The Notch ligands DLL1 and JAG2 act synergistically to regulate hair cell development in the mammalian inner ear
inferredcites →https://doi.org/10.1242/dev.063610openalex-snapshot
Notch signaling: simplicity in design, versatility in function
inferredcites →https://doi.org/10.1242/dev.063735openalex-snapshot
Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock
inferredcites →https://doi.org/10.1242/dev.080515openalex-snapshot
Drosophila neuroblasts: a model for stem cell biology
inferredcites →https://doi.org/10.1242/dev.108100openalex-snapshot
Ligand-dependent Notch signaling strength orchestrates lateral induction and lateral inhibition in the developing inner ear
inferredcites →https://doi.org/10.1242/dev.114.4.939openalex-snapshot
Regulation of proneural gene expression and cell fate during neuroblast segregation in the Drosophila embryo
inferredcites →https://doi.org/10.1242/dev.115535openalex-snapshot
Spatiotemporal oscillations of Notch1, Dll1 and NICD are coordinated across the mouse PSM
inferredcites →https://doi.org/10.1242/dev.124.17.3241openalex-snapshot
Feed-back mechanisms affecting Notch activation at the dorsoventral boundary in the Drosophila wing
inferredcites →https://doi.org/10.1242/dev.124.17.3283openalex-snapshot
Feedback regulation is central to Delta-Notch signalling required for Drosophila wing vein morphogenesis
inferredcites →https://doi.org/10.1242/dev.124.8.1485openalex-snapshot
The function and regulation of cut expression on the wing margin of Drosophila: Notch, Wingless and a dominant negative role for Delta and Serrate
inferredcites →https://doi.org/10.1242/dev.125.3.371openalex-snapshot
Regulation of neuronal specification in the zebrafish spinal cord by Delta function
inferredcites →https://doi.org/10.1242/dev.128.19.3675openalex-snapshot
Notch signaling is required for arterial-venous differentiation during embryonic vascular development
inferredcites →https://doi.org/10.1242/dev.175760openalex-snapshot
Polarized epidermal growth factor secretion ensures robust vulval cell fate specification in Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pcbi.1000015openalex-snapshot
Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation
inferredcites →https://doi.org/10.1371/journal.pcbi.1002069openalex-snapshot
Mutual Inactivation of Notch Receptors and Ligands Facilitates Developmental Patterning
inferredcites →https://doi.org/10.1371/journal.pcbi.1002762openalex-snapshot
Phenomenological Model for Predicting the Catabolic Potential of an Arbitrary Nutrient
inferredcites →https://doi.org/10.1371/journal.pcbi.1004285openalex-snapshot
The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis
inferredcites →https://doi.org/10.1371/journal.pcbi.1005328openalex-snapshot
Psychotic Experiences and Overhasty Inferences Are Related to Maladaptive Learning
inferredcites →https://doi.org/10.1371/journal.pgen.0020004openalex-snapshot
The Notch Ligand JAG1 Is Required for Sensory Progenitor Development in the Mammalian Inner Ear
inferredcites →https://doi.org/10.1371/journal.pgen.0040015openalex-snapshot
Notch Signalling Synchronizes the Zebrafish Segmentation Clock but Is Not Needed To Create Somite Boundaries
inferredcites →https://doi.org/10.1371/journal.pgen.1002762openalex-snapshot
Attenuation of Notch and Hedgehog Signaling Is Required for Fate Specification in the Spinal Cord
inferredcites →https://doi.org/10.1371/journal.pone.0000602openalex-snapshot
Robustness and Stability of the Gene Regulatory Network Involved in DV Boundary Formation in the Drosophila Wing
inferredcites →https://doi.org/10.1371/journal.pone.0024584openalex-snapshot
MiR-34a Targeting of Notch Ligand Delta-Like 1 Impairs CD15+/CD133+ Tumor-Propagating Cells and Supports Neural Differentiation in Medulloblastoma
inferredcites →https://doi.org/10.1371/journal.pone.0095744openalex-snapshot
Competition in Notch Signaling with Cis Enriches Cell Fate Decisions
inferredcites →https://doi.org/10.1371/journal.pone.0126522openalex-snapshot
Stemness of the hybrid Epithelial/Mesenchymal State in Breast Cancer and Its Association with Poor Survival
inferredcites →https://doi.org/10.1371/journal.pone.0166489openalex-snapshot
Time to Decide? Dynamical Analysis Predicts Partial Tip/Stalk Patterning States Arise during Angiogenesis
inferredcites →https://doi.org/10.1523/jneurosci.17-16-06289.1997openalex-snapshot
Pattern Formation in the Basilar Papilla: Evidence for Cell Rearrangement
inferredcites →https://doi.org/10.1593/neo.131870openalex-snapshot
Tumor-Suppressive Activity of Lunatic Fringe in Prostate through Differential Modulation of Notch Receptor Activation
inferredcites →https://doi.org/10.18632/oncotarget.25692openalex-snapshot
A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling
inferredcites →https://doi.org/10.18632/oncotarget.25852openalex-snapshot
Stem cells: a window of opportunity in low-dimensional EMT space
inferredcites →https://doi.org/10.18632/oncotarget.3623openalex-snapshot
OVOL guides the epithelial-hybrid-mesenchymal transition
inferredcites →https://doi.org/10.3389/fnins.2011.00078openalex-snapshot
Dynamic Expression of Notch Signaling Genes in Neural Stem/Progenitor Cells
inferredcites →https://doi.org/10.3389/fonc.2014.00254openalex-snapshot
The Notch ligand Jagged1 as a target for anti-tumor therapy
inferredcites →https://doi.org/10.3390/jcm8050725openalex-snapshot
Quantifying Cancer Epithelial-Mesenchymal Plasticity and its Association with Stemness and Immune Response
inferredcites →https://doi.org/10.7554/elife.02950openalex-snapshot
Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states
inferredcites →https://doi.org/10.7554/elife.06114openalex-snapshot
Myoblast cytonemes mediate Wg signaling from the wing imaginal disc and Delta-Notch signaling to the air sac primordium
inferredcites →https://doi.org/10.7554/elife.12401openalex-snapshot
Long-distance communication by specialized cellular projections during pigment pattern development and evolution
inferredcites →https://doi.org/10.7554/elife.37880openalex-snapshot
Cis-activation in the Notch signaling pathway
inferredcites →https://doi.org/10.7554/elife.44431openalex-snapshot
scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling
inferredcites →https://doi.org/10.7554/elife.46735openalex-snapshot
Metabolic constraints drive self-organization of specialized cell groups

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4768258openalex-extracted
Microenvironmental Entropy Dynamics Analysis Reveals Novel Insights In Notch-Delta-Jagged Decision-Making Mechanism
inferred← citeshttps://doi.org/10.1002/9781119819950.ch29openalex-snapshot
Targeting NOTCH in Lymphoid Malignancies
inferred← citeshttps://doi.org/10.1002/biot.202100463openalex-snapshot
Cell fate‐inducing CARs orthogonally control multiple signaling pathways
inferred← citeshttps://doi.org/10.1002/cso2.1015openalex-snapshot
Investigating epithelial‐mesenchymal heterogeneity of tumors and circulating tumor cells with transcriptomic analysis and biophysical modeling
inferred← citeshttps://doi.org/10.1002/hep.32173openalex-snapshot
Intrahepatic cholangiocyte regeneration from an Fgf‐dependent extrahepatic progenitor niche in a zebrafish model of Alagille Syndrome
inferred← citeshttps://doi.org/10.1002/mgg3.2445openalex-snapshot
Novel insight into FCSK‐congenital disorder of glycosylation through a CRISPR ‐generated cell model
inferred← citeshttps://doi.org/10.1007/978-3-031-22802-5_3openalex-snapshot
Biophysical and Biochemical Mechanisms Underlying Collective Cell Migration in Cancer Metastasis
inferred← citeshttps://doi.org/10.1007/978-981-96-2763-9_6openalex-snapshot
Role and Therapeutic Implication of Notch Signaling Pathway in Cancer
inferred← citeshttps://doi.org/10.1007/s10238-025-01660-9openalex-snapshot
LncRNAs and IgA nephropathy: underlying molecular pathways and clinical applications
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2022.04.002openalex-snapshot
Talking to your neighbors across scales: Long-distance Notch signaling during patterning
inferred← citeshttps://doi.org/10.1016/j.bsheal.2022.03.001openalex-snapshot
Cell-cell communication analysis for single-cell RNA sequencing and its applications in carcinogenesis and COVID-19
inferred← citeshttps://doi.org/10.1016/j.ceb.2024.102444openalex-snapshot
Interplay between Notch signaling and mechanical forces during developmental patterning processes
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.112412openalex-snapshot
Emergence of division of labor in tissues through cell interactions and spatial cues
inferred← citeshttps://doi.org/10.1016/j.coisb.2026.100594openalex-snapshot
Dynamics of cell fate patterning in discrete multicellular systems
inferred← citeshttps://doi.org/10.1016/j.cub.2026.07.041openalex-snapshot
Notch-mediated lateral inhibition is shaped by morphological differences to reinforce bias toward signal-sending or -receiving roles
inferred← citeshttps://doi.org/10.1016/j.devcel.2025.08.016openalex-snapshot
Signaling-dependent refinement of cell fate choice during tissue remodeling in Drosophila pupal wings
inferred← citeshttps://doi.org/10.1016/j.isci.2023.106321openalex-snapshot
Boolean modeling of mechanosensitive epithelial to mesenchymal transition and its reversal
inferred← citeshttps://doi.org/10.1016/j.isci.2024.109979openalex-snapshot
Hallmarks of cancer resistance
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110569openalex-snapshot
Microenvironmental entropy dynamics analysis reveals novel insights into Notch-Delta-Jagged decision-making mechanism
inferred← citeshttps://doi.org/10.1016/j.jnutbio.2023.109483openalex-snapshot
Regulation of the Notch signaling pathway by natural products for cancer therapy
inferred← citeshttps://doi.org/10.1016/j.mtcomm.2025.114149openalex-snapshot
Unlocking healing codes: Nanocarriers and signalling pathways modulation for wound repair
inferred← citeshttps://doi.org/10.1016/j.pbiomolbio.2021.09.005openalex-snapshot
Systems of pattern formation within developmental biology
inferred← citeshttps://doi.org/10.1016/j.semcdb.2022.04.009openalex-snapshot
Self-organized collective cell behaviors as design principles for synthetic developmental biology
inferred← citeshttps://doi.org/10.1016/j.semcdb.2023.03.010openalex-snapshot
Tissue interplay during morphogenesis
inferred← citeshttps://doi.org/10.1016/j.tcb.2025.03.003openalex-snapshot
Bloodhounds chasing the origin of blood cells
inferred← citeshttps://doi.org/10.1021/acssynbio.0c00369openalex-snapshot
Parameterized Computational Framework for the Description and Design of Genetic Circuits of Morphogenesis Based on Contact-Dependent Signaling and Changes in Cell–Cell Adhesion
inferred← citeshttps://doi.org/10.1038/s41467-023-35963-wopenalex-snapshot
Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development
inferred← citeshttps://doi.org/10.1038/s41467-024-50126-1openalex-snapshot
Engineering programmable material-to-cell pathways via synthetic notch receptors to spatially control differentiation in multicellular constructs
inferred← citeshttps://doi.org/10.1038/s41467-026-70478-0openalex-snapshot
Jagged-mediated lateral induction patterns Notch3 signaling within adult neural stem cell populations
inferred← citeshttps://doi.org/10.1038/s41540-025-00551-9openalex-snapshot
Cellular patterns in Arabidopsis root epidermis emerge from gene regulatory network and diffusion dynamical feedback
inferred← citeshttps://doi.org/10.1038/s41589-025-02002-2openalex-snapshot
Strategies and applications of synthetic cell communication
inferred← citeshttps://doi.org/10.1038/s41598-021-00306-6openalex-snapshot
ZSWIM8 is a myogenic protein that partly prevents C2C12 differentiation
inferred← citeshttps://doi.org/10.1038/s44222-025-00338-xopenalex-snapshot
Bioengineering structural anisotropy in living tissues
inferred← citeshttps://doi.org/10.1039/d2sm01508kopenalex-snapshot
The alternate ligand Jagged enhances the robustness of Notch signaling patterns
inferred← citeshttps://doi.org/10.1042/bcj20253055openalex-snapshot
Gut reactions and gut instincts: regulation of intestinal homeostasis by receptor guanylyl cyclase C (GC-C)
inferred← citeshttps://doi.org/10.1042/bst20253048openalex-snapshot
Temporal dynamics of angiogenesis: the emerging role of mechanoregulated pathways
inferred← citeshttps://doi.org/10.1073/pnas.2519341123openalex-snapshot
Force patterning drives quasistratification and graded tissue-scale spatial order in auditory epithelia
inferred← citeshttps://doi.org/10.1080/10409238.2022.2113029openalex-snapshot
Reversible and bidirectional signaling of notch ligands
inferred← citeshttps://doi.org/10.1080/19336934.2021.1953363openalex-snapshot
Mathematical modeling of Notch dynamics in Drosophila neural development
inferred← citeshttps://doi.org/10.1088/1361-6633/acec88openalex-snapshot
Theoretical and computational tools to model multistable gene regulatory networks
inferred← citeshttps://doi.org/10.1088/1367-2630/abcb2eopenalex-snapshot
Entropy-driven cell decision-making predicts ‘fluid-to-solid’ transition in multicellular systems
inferred← citeshttps://doi.org/10.1088/1478-3975/abef79openalex-snapshot
Operating principles of circular toggle polygons
inferred← citeshttps://doi.org/10.1093/gigascience/giac063openalex-snapshot
Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
inferred← citeshttps://doi.org/10.1093/med/9780192867636.003.0008openalex-snapshot
The road to cancer and back: A thermodynamic point of view
inferred← citeshttps://doi.org/10.1093/momics/aaiaf001openalex-snapshot
Paxillin mediates endothelial cell migration and angiogenesis following spinal cord injury: a transcriptomic and functional analysis
inferred← citeshttps://doi.org/10.1096/fj.202501065ropenalex-snapshot
Dynamic Leader–Follower Hierarchies in Collective Cell Migration
inferred← citeshttps://doi.org/10.1098/rsif.2022.0339openalex-snapshot
Dynamic switching of lateral inhibition spatial patterns
inferred← citeshttps://doi.org/10.1098/rsob.220004openalex-snapshot
Notch signalling in healthy and diseased vasculature
inferred← citeshttps://doi.org/10.1101/2020.11.22.392951openalex-snapshot
Operating principles of circular toggle polygons
inferred← citeshttps://doi.org/10.1101/2021.04.21.440858openalex-snapshot
Nrf2 modulates the hybrid epithelial/mesenchymal phenotype and Notch signaling during collective cancer migration
inferred← citeshttps://doi.org/10.1101/2021.05.27.445572openalex-snapshot
Notch controls the cell cycle to define leader versus follower identities during collective cell migration
inferred← citeshttps://doi.org/10.1101/2021.11.16.468748openalex-snapshot
Lattice-based microenvironmental uncertainty driven phenotypic decision-making: a comparison with Notch-Delta-Jagged signaling
inferred← citeshttps://doi.org/10.1101/2022.12.07.519534openalex-snapshot
Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification
inferred← citeshttps://doi.org/10.1101/2023.01.15.524122openalex-snapshot
Age-dependent structural and morphological changes of the stem cell niche disrupt spatiotemporal regulation of stem cells and drive tissue disintegration
inferred← citeshttps://doi.org/10.1101/2023.05.19.541497openalex-snapshot
Engineering Programmable Material-To-Cell Pathways Via Synthetic Notch Receptors To Spatially Control Cellular Phenotypes In Multi-Cellular Constructs
inferred← citeshttps://doi.org/10.1101/2023.12.29.573602openalex-snapshot
The French flag problem revisited: Creating robust and tunable axial patterns without global signaling
inferred← citeshttps://doi.org/10.1101/2024.12.29.630675openalex-snapshot
Organ injury accelerates stem cell differentiation by modulating a fate-transducing lateral inhibition circuit
inferred← citeshttps://doi.org/10.1101/2025.06.26.661757openalex-snapshot
Force patterning drives cell flows and 3D spatial order in auditory epithelia
inferred← citeshttps://doi.org/10.1111/iwj.14097openalex-snapshot
Mechanisms underlying pathological scarring by fibroblasts during wound healing
inferred← citeshttps://doi.org/10.1113/jp285015openalex-snapshot
Are physiological oscillations physiological ?
inferred← citeshttps://doi.org/10.1126/sciadv.adn0172openalex-snapshot
Mechanochemical dynamics of collective cells and hierarchical topological defects in multicellular lumens
inferred← citeshttps://doi.org/10.1126/scitranslmed.abl5471openalex-snapshot
JAGGED-NOTCH3 signaling in vascular remodeling in pulmonary arterial hypertension
inferred← citeshttps://doi.org/10.1134/s1062360422040038openalex-snapshot
Genetic Regulation of Morphogenesis of Drosophila melanogaster Mechanoreceptors
inferred← citeshttps://doi.org/10.1186/s13023-022-02339-0openalex-snapshot
Genetic determinants of syndactyly: perspectives on pathogenesis and diagnosis
inferred← citeshttps://doi.org/10.1186/s40779-025-00595-2openalex-snapshot
Tumor dormancy and relapse: understanding the molecular mechanisms of cancer recurrence
inferred← citeshttps://doi.org/10.1242/bio.060261openalex-snapshot
Aging disrupts spatiotemporal regulation of germline stem cells and niche integrity
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010306openalex-snapshot
Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010768openalex-snapshot
Tissue Forge: Interactive biological and biophysics simulation environment
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1011882openalex-snapshot
A mathematical framework for understanding the spontaneous emergence of complexity applicable to growing multicellular systems
inferred← citeshttps://doi.org/10.21037/sci-2023-019openalex-snapshot
Interplay between BMP2 and Notch signaling in endothelial-mesenchymal transition: implications for cardiac fibrosis
inferred← citeshttps://doi.org/10.21203/rs.3.rs-11191766/v1openalex-snapshot
Mode-resolved Feedback Gain Controls Spatial Symmetry Breaking in an Explicit Notch-Delta-Proneural Circuit
inferred← citeshttps://doi.org/10.3389/fcell.2021.692173openalex-snapshot
Notch Signalling in Breast Development and Cancer
inferred← citeshttps://doi.org/10.3389/fcell.2022.1010639openalex-snapshot
Roles of transducin-like enhancer of split (TLE) family proteins in tumorigenesis and immune regulation
inferred← citeshttps://doi.org/10.3389/fcell.2023.1244105openalex-snapshot
Recent advances in in situ Notch signaling measurement
inferred← citeshttps://doi.org/10.3389/fgene.2020.604585openalex-snapshot
Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data
inferred← citeshttps://doi.org/10.3389/fmolb.2022.807324openalex-snapshot
Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration
inferred← citeshttps://doi.org/10.3389/fncel.2025.1736865openalex-snapshot
Neural stem cells fate under neuroinflammatory conditions and oxidative stress response
inferred← citeshttps://doi.org/10.3389/fnmol.2023.1114015openalex-snapshot
Mechanisms of robustness in gene regulatory networks involved in neural development
inferred← citeshttps://doi.org/10.3390/biophysica3020022openalex-snapshot
Developmental Pattern Formation: Spanish Contributions from a Biophysical Perspective
inferred← citeshttps://doi.org/10.3390/cancers13225726openalex-snapshot
Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell–Cell Signaling during EMT Progression
inferred← citeshttps://doi.org/10.3390/cancers14122997openalex-snapshot
Multiple Mechanisms of NOTCH1 Activation in Chronic Lymphocytic Leukemia: NOTCH1 Mutations and Beyond
inferred← citeshttps://doi.org/10.3390/cancers15164109openalex-snapshot
Notch, SUMOylation, and ESR-Mediated Signalling Are the Main Molecular Pathways Showing Significantly Different Epimutation Scores between Expressing or Not Oestrogen Receptor Breast Cancer in Three Public EWAS Datasets
inferred← citeshttps://doi.org/10.3390/cells11020194openalex-snapshot
Phylogeny, Structure, Functions, and Role of AIRE in the Formation of T-Cell Subsets
inferred← citeshttps://doi.org/10.3390/e23030288openalex-snapshot
Coupled Feedback Loops Involving PAGE4, EMT and Notch Signaling Can Give Rise to Non-Genetic Heterogeneity in Prostate Cancer Cells
inferred← citeshttps://doi.org/10.3390/ijms25010050openalex-snapshot
Targeting Signalling Pathways in Chronic Wound Healing
inferred← citeshttps://doi.org/10.3892/ijo.2023.5563openalex-snapshot
Tumour follower cells: A novel driver of leader cells in collective invasion (Review)
inferred← citeshttps://doi.org/10.47328/ufvbbt.2023.408openalex-snapshot
Efeitos do fungicida Difenoconazol e do herbicida Tebuthiuron em larvas do mosquito Aedes aegypti (Diptera: Culicidae)
inferred← citeshttps://doi.org/10.47820/recima21.v7i10.9158openalex-snapshot
AGENT-BASED MODELING AND GRAPH-THEORETIC ANALYSIS OF ANGIOGENIC VASCULAR NETWORKS
inferred← citeshttps://doi.org/10.5802/crbiol.167openalex-snapshot
Generating neurons in the embryonic and adult brain: compared principles and mechanisms
inferred← citeshttps://doi.org/10.64898/2026.02.01.703083openalex-snapshot
Early Detection of Sudden Transitions in Notch signaling
inferred← citeshttps://doi.org/10.64898/2026.05.24.727552openalex-snapshot
A novel reaction-diffusion architecture for engineering self-organized patterns in mammalian cells
inferred← citeshttps://doi.org/10.64898/2026.08.13.744616openalex-snapshot
Higher-Order Mechanical Neighbourhood Sensing Governs Cell Fate in Complex Tissues
inferred← citeshttps://doi.org/10.64898/2026.09.15.751824openalex-snapshot
Parameters for stable Notch-independent Her6 oscillations across a frequency spectrum in neural stem cell populations
inferred← citeshttps://doi.org/10.7554/elife.73550openalex-snapshot
Notch controls the cell cycle to define leader versus follower identities during collective cell migration
inferred← citeshttps://doi.org/10.7554/elife.89262openalex-snapshot
Spatial–temporal order–disorder transition in angiogenic NOTCH signaling controls cell fate specification
inferred← citeshttps://doi.org/10.7554/elife.89262.1openalex-snapshot
Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification
inferred← citeshttps://doi.org/10.7554/elife.89262.2openalex-snapshot
Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification
inferred← citeshttps://doi.org/10.7554/elife.89262.3openalex-snapshot
Spatial–temporal order–disorder transition in angiogenic NOTCH signaling controls cell fate specification
inferred← citeshttps://doi.org/10.7554/elife.94699openalex-snapshot
The French flag problem revisited: Creating robust and tunable axial patterns without global signaling
inferred← citeshttps://doi.org/10.7554/elife.94699.1openalex-snapshot
The French flag problem revisited: Creating robust and tunable axial patterns without global signaling
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