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Genomic islands of divergence are not affected by geography of speciation in sunflowers
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Basic Local Alignment Search Tool
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Exploratory Spatial Data Analysis
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More than just orphans: are taxonomically-restricted genes important in evolution?
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The genomics of speciation-with-gene-flow
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EMBOSS: The European Molecular Biology Open Software Suite
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Adaptation, speciation and hybrid zones
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Adaptive protein evolution in Drosophila
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The genomic basis of adaptive evolution in threespine sticklebacks
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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A gene expression map of Arabidopsis thaliana development
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The evolutionary dynamics of eukaryotic gene order
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The genic view of the process of speciation
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Natural selection in action during speciation
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Widespread genomic divergence during sympatric speciation
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Genomic rearrangements and the evolution of clusters of locally adaptive loci
inferredcites →https://doi.org/10.1086/504606openalex-snapshot
Adaptive Introgression of Herbivore Resistance Traits in the Weedy Sunflower Helianthus annuus
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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Hybrid Zones and the Genetic Architecture of a Barrier to Gene Flow Between Two Sunflower Species
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Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
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Application of Phylogenetic Networks in Evolutionary Studies
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Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species
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Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers
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Molecular Evolution across the Asteraceae: Micro- and Macroevolutionary Processes
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No evidence for biased co-transmission of speciation islands in Anopheles gambiae
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Genome-wide patterns of divergence during speciation: the lake whitefish case study
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Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing
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Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
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Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
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DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES
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How species evolve collectively: implications of gene flow and selection for the spread of advantageous alleles
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Divergent selection and heterogeneous genomic divergence
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Genome scan of hybridizing sunflowers from Texas (Helianthus annuusandH. debilis) reveals asymmetric patterns of introgression and small islands of genomic differentiation
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Islands of co‐expressed neighbouring genes in Arabidopsis thaliana suggest higher‐order chromosome domains
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THE ESTIMATION OF MAP DISTANCES FROM RECOMBINATION VALUES
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hierfstat , a package for r to compute and test hierarchical F ‐statistics
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MOLECULAR DEMOGRAPHIC HISTORY OF THE ANNUAL SUNFLOWERSHELIANTHUS ANNUUSANDH. PETIOLARIS-LARGE EFFECTIVE POPULATION SIZES AND RATES OF LONG-TERM GENE FLOW
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THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION
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THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION
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THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01537.xopenalex-snapshot
RECONCILING EXTREMELY STRONG BARRIERS WITH HIGH LEVELS OF GENE EXCHANGE IN ANNUAL SUNFLOWERS
inferredcites →https://doi.org/10.1111/mec.12201openalex-snapshot
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
inferredcites →https://doi.org/10.1126/science.1195755openalex-snapshot
Widespread Divergence Between Incipient Anopheles gambiae Species Revealed by Whole Genome Sequences
inferredcites →https://doi.org/10.1139/b11-032openalex-snapshot
Progress towards a reference genome for sunflower
inferredcites →https://doi.org/10.1146/annurev.ecolsys.16.1.113openalex-snapshot
Analysis of Hybrid Zones
inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot
Genomic Islands of Speciation in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pgen.1000212openalex-snapshot
Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph
inferredcites →https://doi.org/10.1534/g3.112.002659openalex-snapshot
Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses
inferredcites →https://doi.org/10.2307/2419126openalex-snapshot
Chromosomal Differentiation among the Annual Helianthus Species
inferredcites →https://doi.org/10.2307/2806033openalex-snapshot
Sunflower Species of the United States.
inferredcites →https://doi.org/10.3390/biology1030575openalex-snapshot
The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq
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Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
inferredcites →https://doi.org/10.3732/ajb.90.12.1708openalex-snapshot
Origin(s) of the diploid hybrid species Helianthus deserticola (Asteraceae)
inferredcites →https://doi.org/10.3732/ajb.94.11.1837openalex-snapshot
High‐resolution phylogeny for Helianthus (Asteraceae) using the 18S‐26S ribosomal DNA external transcribed spacer
inferredcites →https://doi.org/10.5281/zenodo.16480062openalex-snapshot
BIOSYSTEMATICS OF HELIANTHUS DEBILIS
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Inversion invasions: when the genetic basis of local adaptation is concentrated within inversions in the face of gene flow
inferred← citeshttps://doi.org/10.1101/029561openalex-snapshot
Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens
inferred← citeshttps://doi.org/10.1101/041467openalex-snapshot
Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in greenish warblers
inferred← citeshttps://doi.org/10.1101/2020.11.03.354068openalex-snapshot
Selection on old variants drives adaptive radiation of Metrosideros across the Hawaiian Islands
inferred← citeshttps://doi.org/10.1101/2025.09.25.678555openalex-snapshot
Genome-wide signatures of reproductive isolation shape the varied genomic landscape of the roundtail horned lizard ( Phrynosoma modestum )
inferred← citeshttps://doi.org/10.1101/342352openalex-snapshot
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
inferred← citeshttps://doi.org/10.1101/703108openalex-snapshot
Evolution of barrier loci at an intermediate stage of speciation with gene flow
inferred← citeshttps://doi.org/10.1101/cshperspect.a041438openalex-snapshot
Genomic Approaches Are Improving Taxonomic Representation in Genetic Studies of Speciation
inferred← citeshttps://doi.org/10.1101/gr.187237.114openalex-snapshot
Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis
inferred← citeshttps://doi.org/10.1101/gr.196485.115openalex-snapshot
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferred← citeshttps://doi.org/10.1101/gr.212522.116openalex-snapshot
Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches
inferred← citeshttps://doi.org/10.1105/tpc.113.115352openalex-snapshot
Expression Quantitative Trait Locus Mapping across Water Availability Environments Reveals Contrasting Associations with Genomic Features in Arabidopsis
inferred← citeshttps://doi.org/10.1111/1755-0998.12469openalex-snapshot
hybridcheck : software for the rapid detection, visualization and dating of recombinant regions in genome sequence data
inferred← citeshttps://doi.org/10.1111/1755-0998.13528openalex-snapshot
Chromosome‐level genome assembly reveals genomic architecture of northern range expansion in the mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae)
inferred← citeshttps://doi.org/10.1111/1755-0998.13784openalex-snapshot
DNA barcoding of Chinese snakes reveals hidden diversity and conservation needs
inferred← citeshttps://doi.org/10.1111/1755-0998.13969openalex-snapshot
The great tit HapMap project: A continental‐scale analysis of genomic variation in a songbird
inferred← citeshttps://doi.org/10.1111/2041-210x.13324openalex-snapshot
The multiple population genetic and demographic routes to islands of genomic divergence
inferred← citeshttps://doi.org/10.1111/eva.13656openalex-snapshot
Genomic evidence for domestication selection in three hatchery populations of Chinook salmon, Oncorhynchus tshawytscha
inferred← citeshttps://doi.org/10.1111/eva.13767openalex-snapshot
Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses
inferred← citeshttps://doi.org/10.1111/evo.12278openalex-snapshot
THE EVOLUTION OF LANDSCAPE GENETICS
inferred← citeshttps://doi.org/10.1111/evo.12698openalex-snapshot
A genomic selection component analysis characterizes migration-selection balance
inferred← citeshttps://doi.org/10.1111/evo.13027openalex-snapshot
Multiple reproductive barriers separate recently diverged sunflower ecotypes
inferred← citeshttps://doi.org/10.1111/evo.13278openalex-snapshot
History cleans up messes: The impact of time in driving divergence and introgression in a tropical suture zone
inferred← citeshttps://doi.org/10.1111/evo.13652openalex-snapshot
Ecological divergence plays an important role in strong but complex reproductive isolation in campions (Silene)*
inferred← citeshttps://doi.org/10.1111/evo.13796openalex-snapshot
Ecological speciation in sympatric palms: 3. Genetic map reveals genomic islands underlying species divergence in Howea
inferred← citeshttps://doi.org/10.1111/evo.13813openalex-snapshot
Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow
inferred← citeshttps://doi.org/10.1111/evo.14234openalex-snapshot
Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs*
inferred← citeshttps://doi.org/10.1111/evo.14360openalex-snapshot
Aberrant RNA splicing due to genetic incompatibilities in sunflower hybrids
inferred← citeshttps://doi.org/10.1111/jeb.12441openalex-snapshot
Genomic regions repeatedly involved in divergence among plant‐specialized pea aphid biotypes
inferred← citeshttps://doi.org/10.1111/jeb.12817openalex-snapshot
Fitness differences between parapatric lake and stream stickleback revealed by a field transplant
inferred← citeshttps://doi.org/10.1111/jeb.13029openalex-snapshot
The genetics of adaptation to discrete heterogeneous environments: frequent mutation or large‐effect alleles can allow range expansion
inferred← citeshttps://doi.org/10.1111/jeb.13047openalex-snapshot
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
inferred← citeshttps://doi.org/10.1111/jeb.13108openalex-snapshot
Dissecting differentiation landscapes: a linked selection's perspective
inferred← citeshttps://doi.org/10.1111/jeb.13112openalex-snapshot
Speciation, species persistence and the goals of studying genomic barriers to gene flow
inferred← citeshttps://doi.org/10.1111/jeb.13116openalex-snapshot
Evolution of recombination rates and the genomic landscape of speciation
inferred← citeshttps://doi.org/10.1111/jeb.14219openalex-snapshot
Strong postmating reproductive isolation in Mimulus section Eunanus
inferred← citeshttps://doi.org/10.1111/jipb.12697openalex-snapshot
Environmental drivers and genomic architecture of trait differentiation in fire‐adaptedBanksia attenuataecotypes
inferred← citeshttps://doi.org/10.1111/jipb.12718openalex-snapshot
Incomplete reproductive isolation betweenRhododendrontaxa enables hybrid formation and persistence
inferred← citeshttps://doi.org/10.1111/jipb.13905openalex-snapshot
Population genomic analysis unravels the evolutionary processes leading to budding speciation
inferred← citeshttps://doi.org/10.1111/jse.12817openalex-snapshot
Linked selection, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence in Quercus dentata
inferred← citeshttps://doi.org/10.1111/jse.13008openalex-snapshot
Linked selection and recombination rate generate both shared and lineage‐specific genomic islands of divergence in two independent Quercus species pairs
inferred← citeshttps://doi.org/10.1111/mec.12600openalex-snapshot
Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers
inferred← citeshttps://doi.org/10.1111/mec.12616openalex-snapshot
Advances in E cological S peciation: an integrative approach
inferred← citeshttps://doi.org/10.1111/mec.12720openalex-snapshot
The genomic signature of parallel adaptation from shared genetic variation
inferred← citeshttps://doi.org/10.1111/mec.12750openalex-snapshot
Theoretical models of the influence of genomic architecture on the dynamics of speciation
inferred← citeshttps://doi.org/10.1111/mec.12752openalex-snapshot
Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood ( Populus trichocarpa )
inferred← citeshttps://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferred← citeshttps://doi.org/10.1111/mec.12810openalex-snapshot
A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
inferred← citeshttps://doi.org/10.1111/mec.12842openalex-snapshot
A role for migration‐linked genes and genomic islands in divergence of a songbird
inferred← citeshttps://doi.org/10.1111/mec.12883openalex-snapshot
Do the same genes underlie parallel phenotypic divergence in different L ittorina saxatilis populations?
inferred← citeshttps://doi.org/10.1111/mec.12896openalex-snapshot
Genomic footprints of speciation in Atlantic eels ( Anguilla anguilla and A. rostrata )
inferred← citeshttps://doi.org/10.1111/mec.12942openalex-snapshot
Stark sexual display divergence among jumping spider populations in the face of gene flow
inferred← citeshttps://doi.org/10.1111/mec.13044openalex-snapshot
Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower
inferred← citeshttps://doi.org/10.1111/mec.13150openalex-snapshot
Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation
inferred← citeshttps://doi.org/10.1111/mec.13299openalex-snapshot
Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels
inferred← citeshttps://doi.org/10.1111/mec.13397openalex-snapshot
Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide‐toxic habitats of a neotropical fish (Poecilia mexicana)
inferred← citeshttps://doi.org/10.1111/mec.13399openalex-snapshot
The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three‐spine sticklebacks in divergent environments
inferred← citeshttps://doi.org/10.1111/mec.13463openalex-snapshot
Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations
inferred← citeshttps://doi.org/10.1111/mec.13557openalex-snapshot
A genomic perspective on hybridization and speciation
inferred← citeshttps://doi.org/10.1111/mec.13569openalex-snapshot
Revisiting a classic case of introgression: hybridization and gene flow in Californian sunflowers
inferred← citeshttps://doi.org/10.1111/mec.13611openalex-snapshot
The evolution of genomic islands by increased establishment probability of linked alleles
inferred← citeshttps://doi.org/10.1111/mec.13630openalex-snapshot
Reproductive isolation and introgression between sympatricMimulusspecies
inferred← citeshttps://doi.org/10.1111/mec.13640openalex-snapshot
Targeted resequencing reveals geographical patterns of differentiation for loci implicated in parallel evolution
inferred← citeshttps://doi.org/10.1111/mec.13645openalex-snapshot
Geographic cline analysis as a tool for studying genome‐wide variation: a case study of pollinator‐mediated divergence in a monkeyflower
inferred← citeshttps://doi.org/10.1111/mec.13664openalex-snapshot
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
inferred← citeshttps://doi.org/10.1111/mec.13751openalex-snapshot
Strong reproductive isolation and narrow genomic tracts of differentiation among three woodpecker species in secondary contact
inferred← citeshttps://doi.org/10.1111/mec.13765openalex-snapshot
Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow
inferred← citeshttps://doi.org/10.1111/mec.13774openalex-snapshot
Genomic landscape of early ecological speciation initiated by selection on nuptial colour
inferred← citeshttps://doi.org/10.1111/mec.13792openalex-snapshot
Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species
inferred← citeshttps://doi.org/10.1111/mec.13805openalex-snapshot
Adaptive genomic divergence under high gene flow between freshwater and brackish‐water ecotypes of prickly sculpin (Cottus asper) revealed by Pool‐Seq
inferred← citeshttps://doi.org/10.1111/mec.13933openalex-snapshot
Genomic islands of divergence linked to ecotypic variation in sockeye salmon
inferred← citeshttps://doi.org/10.1111/mec.14117openalex-snapshot
Can genomic data alone tell us whether speciation happened with gene flow?
inferred← citeshttps://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
inferred← citeshttps://doi.org/10.1111/mec.14226openalex-snapshot
Gene flow and selection interact to promote adaptive divergence in regions of low recombination
inferred← citeshttps://doi.org/10.1111/mec.14236openalex-snapshot
Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient
inferred← citeshttps://doi.org/10.1111/mec.14248openalex-snapshot
Demography and genome divergence of lake and stream populations of an East African cichlid fish
inferred← citeshttps://doi.org/10.1111/mec.14251openalex-snapshot
Adaptation despite gene flow? Low recombination helps
inferred← citeshttps://doi.org/10.1111/mec.14373openalex-snapshot
Genomics of adaptive divergence with chromosome‐scale heterogeneity in crossover rate
inferred← citeshttps://doi.org/10.1111/mec.14383openalex-snapshot
Genomic differentiation and patterns of gene flow between two long‐tailed tit species (Aegithalos)
inferred← citeshttps://doi.org/10.1111/mec.14494openalex-snapshot
A genomic map of clinal variation across the European rabbit hybrid zone
inferred← citeshttps://doi.org/10.1111/mec.14699openalex-snapshot
Meta‐analysis of chromosome‐scale crossover rate variation in eukaryotes and its significance to evolutionary genomics
inferred← citeshttps://doi.org/10.1111/mec.14799openalex-snapshot
Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races
inferred← citeshttps://doi.org/10.1111/mec.14909openalex-snapshot
Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process
inferred← citeshttps://doi.org/10.1111/mec.14977openalex-snapshot
Genomic insights into the vulnerability of sympatric whitefish species flocks
inferred← citeshttps://doi.org/10.1111/mec.14978openalex-snapshot
Current geography masks dynamic history of gene flow during speciation in northern Australian birds
inferred← citeshttps://doi.org/10.1111/mec.15157openalex-snapshot
Genomic signatures of sympatric speciation with historical and contemporary gene flow in a tropical anthozoan (Hexacorallia: Actiniaria)
inferred← citeshttps://doi.org/10.1111/mec.15188openalex-snapshot
Lack of gene flow: Narrow and dispersed differentiation islands in a triplet of Leptidea butterfly species
inferred← citeshttps://doi.org/10.1111/mec.15338openalex-snapshot
Lineage‐specific adaptation to climate involves flowering time in North American Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1111/mec.15571openalex-snapshot
Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene)
inferred← citeshttps://doi.org/10.1111/mec.15861openalex-snapshot
Using replicate hybrid zones to understand the genomic basis of adaptive divergence
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