On the public citation graph

Positive Selection and Inactivation in the Vision and Hearing Genes of Cetaceans

0 signed · 130 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajmg.a.30907openalex-snapshot
A novel missense mutation in a C2 domain ofOTOF results in autosomal recessive auditory neuropathy
inferredcites →https://doi.org/10.1002/ar.20529openalex-snapshot
Adaptive features of aquatic mammals' eye
inferredcites →https://doi.org/10.1007/978-0-387-21706-2openalex-snapshot
Modern Applied Statistics with S
inferredcites →https://doi.org/10.1007/978-1-4612-4356-4openalex-snapshot
The Sonar of Dolphins
inferredcites →https://doi.org/10.1007/978-1-4614-0631-0_105openalex-snapshot
A Tale of Two Kinases in Rods and Cones
inferredcites →https://doi.org/10.1007/s11010-009-0322-zopenalex-snapshot
Novel functions of photoreceptor guanylate cyclases revealed by targeted deletion
inferredcites →https://doi.org/10.1016/b978-0-12-373553-9.x0001-6openalex-snapshot
Encyclopedia of Marine Mammals
inferredcites →https://doi.org/10.1016/j.ajhg.2009.07.017openalex-snapshot
Mutations in LOXHD1, an Evolutionarily Conserved Stereociliary Protein, Disrupt Hair Cell Function in Mice and Cause Progressive Hearing Loss in Humans
inferredcites →https://doi.org/10.1016/j.ajhg.2010.01.016openalex-snapshot
Mutations in Grxcr1 Are The Basis for Inner Ear Dysfunction in the Pirouette Mouse
inferredcites →https://doi.org/10.1016/j.celrep.2014.07.030openalex-snapshot
Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.058openalex-snapshot
TMC1 and TMC2 Localize at the Site of Mechanotransduction in Mammalian Inner Ear Hair Cell Stereocilia
inferredcites →https://doi.org/10.1016/j.celrep.2018.05.024openalex-snapshot
Mammalian Auditory Hair Cell Bundle Stiffness Affects Frequency Tuning by Increasing Coupling along the Length of the Cochlea
inferredcites →https://doi.org/10.1016/j.conb.2008.08.016openalex-snapshot
Cochlear amplification, outer hair cells and prestin
inferredcites →https://doi.org/10.1016/j.cub.2009.11.042openalex-snapshot
The hearing gene Prestin unites echolocating bats and whales
inferredcites →https://doi.org/10.1016/j.cub.2009.11.058openalex-snapshot
Convergent sequence evolution between echolocating bats and dolphins
inferredcites →https://doi.org/10.1016/j.cub.2010.09.008openalex-snapshot
Cetaceans on a Molecular Fast Track to Ultrasonic Hearing
inferredcites →https://doi.org/10.1016/j.cub.2016.06.004openalex-snapshot
The Origin of High-Frequency Hearing in Whales
inferredcites →https://doi.org/10.1016/j.cub.2017.04.061openalex-snapshot
Infrasonic and Ultrasonic Hearing Evolved after the Emergence of Modern Whales
inferredcites →https://doi.org/10.1016/j.cub.2018.10.037openalex-snapshot
Narrow Acoustic Field of View Drives Frequency Scaling in Toothed Whale Biosonar
inferredcites →https://doi.org/10.1016/j.neuron.2018.07.006openalex-snapshot
Mechanotransduction by PCDH15 Relies on a Novel cis-Dimeric Architecture
inferredcites →https://doi.org/10.1016/j.ympev.2012.10.012openalex-snapshot
A phylogenetic blueprint for a modern whale
inferredcites →https://doi.org/10.1016/j.ympev.2014.05.016openalex-snapshot
Eyes underground: Regression of visual protein networks in subterranean mammals
inferredcites →https://doi.org/10.1016/s0169-5347(01)02236-4openalex-snapshot
Deciphering whale origins with molecules and fossils
inferredcites →https://doi.org/10.1017/s095252380017511xopenalex-snapshot
Spectral-tuning mechanisms of marine mammal rhodopsins and correlations with foraging depth
inferredcites →https://doi.org/10.1038/83667openalex-snapshot
Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D
inferredcites →https://doi.org/10.1038/hdy.2011.119openalex-snapshot
Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence
inferredcites →https://doi.org/10.1038/nature02720openalex-snapshot
Eocene evolution of whale hearing
inferredcites →https://doi.org/10.1038/nature06091openalex-snapshot
Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells
inferredcites →https://doi.org/10.1038/nature07380openalex-snapshot
Stereocilin-deficient mice reveal the origin of cochlear waveform distortions
inferredcites →https://doi.org/10.1038/nature12511openalex-snapshot
Genome-wide signatures of convergent evolution in echolocating mammals
inferredcites →https://doi.org/10.1038/ng.2835openalex-snapshot
Minke whale genome and aquatic adaptation in cetaceans
inferredcites →https://doi.org/10.1038/ng.3198openalex-snapshot
Convergent evolution of the genomes of marine mammals
inferredcites →https://doi.org/10.1038/ng1095-170openalex-snapshot
Mouse models of Tay–Sachs and Sandhoff diseases differ in neurologic phenotype and ganglioside metabolism
inferredcites →https://doi.org/10.1038/ng1208openalex-snapshot
Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31
inferredcites →https://doi.org/10.1038/s41467-018-03646-6openalex-snapshot
Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases
inferredcites →https://doi.org/10.1038/s41598-018-34758-0openalex-snapshot
Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus
inferredcites →https://doi.org/10.1046/j.0953-816x.2001.01533.xopenalex-snapshot
For whales and seals the ocean is not blue: a visual pigment loss in marine mammals*
inferredcites →https://doi.org/10.1073/pnas.0911385107openalex-snapshot
The structure of the harmonin/sans complex reveals an unexpected interaction mode of the two Usher syndrome proteins
inferredcites →https://doi.org/10.1074/jbc.m610369200openalex-snapshot
The Function of Guanylate Cyclase 1 and Guanylate Cyclase 2 in Rod and Cone Photoreceptors
inferredcites →https://doi.org/10.1080/10635150802304787openalex-snapshot
The Vestigial Olfactory Receptor Subgenome of Odontocete Whales: Phylogenetic Congruence between Gene-Tree Reconciliation and Supermatrix Methods
inferredcites →https://doi.org/10.1083/jcb.201002089openalex-snapshot
Otoferlin is a calcium sensor that directly regulates SNARE-mediated membrane fusion
inferredcites →https://doi.org/10.1086/321277openalex-snapshot
Mutations of the Protocadherin Gene PCDH15 Cause Usher Syndrome Type 1F
inferredcites →https://doi.org/10.1093/bioinformatics/bti079openalex-snapshot
HyPhy: hypothesis testing using phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btn615openalex-snapshot
AmiGO: online access to ontology and annotation data
inferredcites →https://doi.org/10.1093/biolinnean/bly194openalex-snapshot
Raising your voice: evolution of narrow-band high-frequency signals in toothed whales (Odontoceti)
inferredcites →https://doi.org/10.1093/gbe/evs123openalex-snapshot
Genome-Wide Scans for Candidate Genes Involved in the Aquatic Adaptation of Dolphins
inferredcites →https://doi.org/10.1093/gbe/evu095openalex-snapshot
Massive Losses of Taste Receptor Genes in Toothed and Baleen Whales
inferredcites →https://doi.org/10.1093/icb/icy004openalex-snapshot
Regressed but Not Gone: Patterns of Vision Gene Loss and Retention in Subterranean Mammals
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msu194openalex-snapshot
Parallel Sites Implicate Functional Convergence of the Hearing Gene Prestin among Echolocating Mammals
inferredcites →https://doi.org/10.1093/molbev/msv022openalex-snapshot
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
inferredcites →https://doi.org/10.1093/molbev/msv175openalex-snapshot
Family Wide Molecular Adaptations to Underground Life in African Mole-Rats Revealed by Phylogenomic Analysis
inferredcites →https://doi.org/10.1093/molbev/msv217openalex-snapshot
Spectral Tuning of Killer Whale (Orcinus orca) Rhodopsin: Evidence for Positive Selection and Functional Adaptation in a Cetacean Visual Pigment
inferredcites →https://doi.org/10.1093/molbev/msx083openalex-snapshot
Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans
inferredcites →https://doi.org/10.1093/molbev/msx335openalex-snapshot
Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes
inferredcites →https://doi.org/10.1093/sysbio/syz068openalex-snapshot
Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture
inferredcites →https://doi.org/10.1097/01.moo.0000134449.05454.82openalex-snapshot
The cochlear amplifier: augmentation of the traveling wave within the inner ear
inferredcites →https://doi.org/10.1097/moo.0b013e32830e20c4openalex-snapshot
The tectorial membrane: one slice of a complex cochlear sandwich
inferredcites →https://doi.org/10.1098/rsos.150156openalex-snapshot
A phylogenomic analysis of the role and timing of molecular adaptation in the aquatic transition of cetartiodactyl mammals
inferredcites →https://doi.org/10.1098/rspb.2002.2278openalex-snapshot
Genetic evidence for the ancestral loss of short-wavelength-sensitive cone pigments in mysticete and odontocete cetaceans
inferredcites →https://doi.org/10.1098/rspb.2012.0869openalex-snapshot
Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown
inferredcites →https://doi.org/10.1098/rspb.2014.2192openalex-snapshot
Genomic evidence for rod monochromacy in sloths and armadillos suggests early subterranean history for Xenarthra
inferredcites →https://doi.org/10.1098/rspb.2016.2743openalex-snapshot
Epistatic interactions influence terrestrial–marine functional shifts in cetacean rhodopsin
inferredcites →https://doi.org/10.1101/gr.099416.109openalex-snapshot
Ecological adaptation determines functional mammalian olfactory subgenomes
inferredcites →https://doi.org/10.1111/j.1471-4159.2004.03003.xopenalex-snapshot
M opsin phosphorylation in intact mammalian retinas
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/sciadv.aat8821openalex-snapshot
Genomic and functional evidence reveals molecular insights into the origin of echolocation in whales
inferredcites →https://doi.org/10.1136/jclinpath-2013-201768openalex-snapshot
Gene of the month: E-cadherin ( CDH1 )
inferredcites →https://doi.org/10.1136/jmedgenet-2017-104837openalex-snapshot
Their loss is our gain: regressive evolution in vertebrates provides genomic models for uncovering human disease loci
inferredcites →https://doi.org/10.1136/jmg.2005.032086openalex-snapshot
Espin gene (ESPN) mutations associated with autosomal dominant hearing loss cause defects in microvillar elongation or organisation
inferredcites →https://doi.org/10.1136/jmg.2005.038612openalex-snapshot
OTOF mutations revealed by genetic analysis of hearing loss families including a potential temperature sensitive auditory neuropathy allele
inferredcites →https://doi.org/10.1159/000491068openalex-snapshot
A Natural Occurring Mouse Model with Adgrv1 Mutation of Usher Syndrome 2C and Characterization of its Recombinant Inbred Strains
inferredcites →https://doi.org/10.1167/iovs.08-2497openalex-snapshot
A Homozygous Missense Mutation in the IRBP Gene ( RBP3 ) Associated with Autosomal Recessive Retinitis Pigmentosa
inferredcites →https://doi.org/10.1167/iovs.15-16520openalex-snapshot
Lack of Interphotoreceptor Retinoid Binding Protein Caused by Homozygous Mutation of RBP3 Is Associated With High Myopia and Retinal Dystrophy
inferredcites →https://doi.org/10.1186/1471-2164-14-916openalex-snapshot
Comparative inner ear transcriptome analysis between the Rickett’s big-footed bats (Myotis ricketti) and the greater short-nosed fruit bats (Cynopterus sphinx)
inferredcites →https://doi.org/10.1186/s40851-014-0002-zopenalex-snapshot
Aquatic adaptation and the evolution of smell and taste in whales
inferredcites →https://doi.org/10.1242/jeb.02596openalex-snapshot
Foraging Blainville's beaked whales (Mesoplodon densirostris)produce distinct click types matched to different phases of echolocation
inferredcites →https://doi.org/10.1371/journal.pgen.1002788openalex-snapshot
Parallel Evolution of Auditory Genes for Echolocation in Bats and Toothed Whales
inferredcites →https://doi.org/10.1371/journal.pgen.1003432openalex-snapshot
Rod Monochromacy and the Coevolution of Cetacean Retinal Opsins
inferredcites →https://doi.org/10.1371/journal.pone.0065491openalex-snapshot
How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome
inferredcites →https://doi.org/10.1371/journal.pone.0068867openalex-snapshot
Independent Losses of Visual Perception Genes Gja10 and Rbp3 in Echolocating Bats (Order: Chiroptera)
inferredcites →https://doi.org/10.1523/jneurosci.21-23-09175.2001openalex-snapshot
Species-Specific Differences in Expression of G-Protein-Coupled Receptor Kinase (GRK) 7 and GRK1 in Mammalian Cone Photoreceptor Cells: Implications for Cone Cell Phototransduction
inferredcites →https://doi.org/10.1523/jneurosci.2166-06.2006openalex-snapshot
The Chloride Intracellular Channel Protein CLIC5 Is Expressed at High Levels in Hair Cell Stereocilia and Is Essential for Normal Inner Ear Function
inferredcites →https://doi.org/10.1523/jneurosci.5854-08.2009openalex-snapshot
Essential and Synergistic Roles of RP1 and RP1L1 in Rod Photoreceptor Axoneme and Retinitis Pigmentosa
inferredcites →https://doi.org/10.15252/embj.201694564openalex-snapshot
Hair cell synaptic dysfunction, auditory fatigue and thermal sensitivity in otoferlin Ile515Thr mutants
inferredcites →https://doi.org/10.1534/g3.114.011262openalex-snapshot
Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii
inferredcites →https://doi.org/10.3389/fevo.2016.00061openalex-snapshot
Inactivation of Cone-Specific Phototransduction Genes in Rod Monochromatic Cetaceans
inferredcites →https://doi.org/10.3389/fgene.2019.00076openalex-snapshot
Excess of Rare Missense Variants in Hearing Loss Genes in Sporadic Meniere Disease
inferredcites →https://doi.org/10.5860/choice.40-0656openalex-snapshot
Encyclopedia of marine mammals

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4795031openalex-extracted
Into the Blue: Evolutionary Adaptations Associated with the Diversification of Baleen Whales
inferred← citeshttps://doi.org/10.1002/cne.25101openalex-snapshot
A comparative analysis of cone photoreceptor morphology in bowhead and beluga whales
inferred← citeshttps://doi.org/10.1002/ece3.8595openalex-snapshot
Evolutionary analyses of visual opsin genes in frogs and toads: Diversity, duplication, and positive selection
inferred← citeshttps://doi.org/10.1007/s00239-026-10327-2openalex-snapshot
Sensing Underwater: Diversifying Selection, Convergent Evolution and Inactivation in Sensory Receptors’ Genes of Aquatic Mammals
inferred← citeshttps://doi.org/10.1007/s11055-025-01914-9openalex-snapshot
From Rod to Cone: Functional Transformations in the Evolution of Vertebrate Photoreceptors
inferred← citeshttps://doi.org/10.1016/b978-0-443-13669-6.00006-6openalex-snapshot
Beaked whales of the genus Mesoplodon Gervais, 1850
inferred← citeshttps://doi.org/10.1016/b978-0-443-13669-6.00007-8openalex-snapshot
Bottlenose whales Hyperoodon ampullatus (Forster, 1770) and Hyperoodon planifrons Flower, 1882
inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00155-5openalex-snapshot
Sensory Systems: Molecular Evolution in Vertebrates
inferred← citeshttps://doi.org/10.1016/j.cub.2021.05.062openalex-snapshot
A drastic shift in the energetic landscape of toothed whale sperm cells
inferred← citeshttps://doi.org/10.1016/j.gene.2024.148822openalex-snapshot
Into the Blue: Exploring genetic mechanisms behind the evolution of baleen whales
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110394openalex-snapshot
The genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment
inferred← citeshttps://doi.org/10.1016/j.tins.2022.12.002openalex-snapshot
The evolutionary tuning of hearing
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.11.002openalex-snapshot
Convergent Cortistatin losses parallel modifications in circadian rhythmicity and energy homeostasis in Cetacea and other mammalian lineages
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107463openalex-snapshot
Molecular evolutionary analyses of tooth genes support sequential loss of enamel and teeth in baleen whales (Mysticeti)
inferred← citeshttps://doi.org/10.1038/s41437-021-00403-2openalex-snapshot
The population genomics of adaptive loss of function
inferred← citeshttps://doi.org/10.1038/s41576-026-00933-7openalex-snapshot
The genetic foundations of convergent traits
inferred← citeshttps://doi.org/10.1038/s41598-022-24529-3openalex-snapshot
The molecular evolution of genes previously associated with large sizes reveals possible pathways to cetacean gigantism
inferred← citeshttps://doi.org/10.1038/s41598-024-66082-1openalex-snapshot
Evolution of ion channels in cetaceans: a natural experiment in the tree of life
inferred← citeshttps://doi.org/10.1038/s41598-025-92039-zopenalex-snapshot
Trichromacy and ultraviolet vision in a nocturnal marsupial
inferred← citeshttps://doi.org/10.1073/pnas.2106080118openalex-snapshot
Comparative genomics provides insights into the aquatic adaptations of mammals
inferred← citeshttps://doi.org/10.1093/database/baaf065openalex-snapshot
Gene Loss DB: a curated database for gene loss in mammals—the cetacean collection
inferred← citeshttps://doi.org/10.1093/gbe/evae223openalex-snapshot
Parallel Spectral Tuning of a Cone Visual Pigment Provides Evidence for Ancient Deep-Sea Adaptations in Cetaceans
inferred← citeshttps://doi.org/10.1093/molbev/msab028openalex-snapshot
Dietary Diversification and Specialization in Neotropical Bats Facilitated by Early Molecular Evolution
inferred← citeshttps://doi.org/10.1093/molbev/msab262openalex-snapshot
Convergent Phenotypic Evolution of Rhodopsin for Dim-Light Sensing across Deep-Diving Vertebrates
inferred← citeshttps://doi.org/10.1098/rsos.242107openalex-snapshot
The unexpected loss of the ‘hunger hormone’ ghrelin in true passerines: a game changer in migration physiology
inferred← citeshttps://doi.org/10.1098/rspb.2024.1106openalex-snapshot
Relaxed selection in evolution of genes regulating limb development gives clue to variation in forelimb morphology of cetaceans and other mammals
inferred← citeshttps://doi.org/10.1101/2020.05.11.087833openalex-snapshot
Differential Cetacea Circadian Rhythmicity is associated with the molecular erosion of Cortistatin
inferred← citeshttps://doi.org/10.1101/2021.08.27.457945openalex-snapshot
Evolutionary analyses of visual opsin genes in anurans reveals diversity and positive selection suggestive of functional adaptation to distinct light environments
inferred← citeshttps://doi.org/10.1101/2021.10.26.465984openalex-snapshot
A cautionary tale on proper use of branch-site models to detect convergent positive selection
inferred← citeshttps://doi.org/10.1111/1749-4877.12723openalex-snapshot
The rough‐toothed dolphin genome provides new insights into the genetic mechanism of its rough teeth
inferred← citeshttps://doi.org/10.1111/joa.13522openalex-snapshot
Evolution of orbit size in toothed whales (Artiodactyla: Odontoceti)
inferred← citeshttps://doi.org/10.1111/mms.13148openalex-snapshot
Best practices for collecting and preserving marine mammal biological samples in the ‘omics era
inferred← citeshttps://doi.org/10.1186/s12862-022-02038-1openalex-snapshot
Seascape genomics of common dolphins (Delphinus delphis) reveals adaptive diversity linked to regional and local oceanography
inferred← citeshttps://doi.org/10.1186/s12864-024-10910-1openalex-snapshot
Molecular evolution of toothed whale genes reveals adaptations to echolocating in different environments
inferred← citeshttps://doi.org/10.1186/s12915-021-01170-6openalex-snapshot
Hearing loss genes reveal patterns of adaptive evolution at the coding and non-coding levels in mammals
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2025-0243openalex-snapshot
From few to many: How non-model organisms’ genomics broadened our understanding of molecular evolution
inferred← citeshttps://doi.org/10.2517/pr220027openalex-snapshot
New Fossil Lipotid (Cetacea, Delphinida) from the Upper Miocene of Japan
inferred← citeshttps://doi.org/10.3389/fevo.2022.1069088openalex-snapshot
Accelerated evolution of dim-light vision-related arrestin in deep-diving amniotes
inferred← citeshttps://doi.org/10.3389/fmars.2025.1562045openalex-snapshot
Genomic infrastructure for cetacean research and conservation: reference genomes for eight families spanning the cetacean tree of life
inferred← citeshttps://doi.org/10.6084/m9.figshare.20291145openalex-snapshot
Additional file 1 of Seascape genomics of common dolphins (Delphinus delphis) reveals adaptive diversity linked to regional and local oceanography
inferred← citeshttps://doi.org/10.70675/e1915911z709dz4cfez85b5z4f21b4040e8bopenalex-snapshot
Phylogenetic detection of protein sites associated to a phenotype, at the genome scale
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.