On the public citation graph

Comparative Molecular Simulation of Pparg Protein Interactions with Omega-3 and Omega-6 Lipid Mediators

https://doi.org/10.2139/ssrn.4782907
0 signed · 65 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0506s15openalex-extracted
Comparative Protein Structure Modeling Using Modeller
inferredcites →https://doi.org/10.1002/jcc.20945openalex-extracted
CHARMM‐GUI: A web‐based graphical user interface for CHARMM
inferredcites →https://doi.org/10.1002/jcc.21367openalex-extracted
CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields
inferredcites →https://doi.org/10.1002/jcc.23067openalex-extracted
Extension of the CHARMM general force field to sulfonyl‐containing compounds and its utility in biomolecular simulations
inferredcites →https://doi.org/10.1002/pro.5560020916openalex-extracted
Verification of protein structures: Patterns of nonbonded atomic interactions
inferredcites →https://doi.org/10.1002/prot.20266openalex-extracted
Rational discovery of a novel interface for a coactivator in the peroxisome proliferator‐activated receptor γ: Theoretical implications of impairment in type 2 diabetes mellitus
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-extracted
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/b978-0-12-824315-2.00533-9openalex-extracted
Peroxisome proliferator-activated receptors (PPARs)
inferredcites →https://doi.org/10.1016/j.bbalip.2007.01.007openalex-extracted
Peroxisome proliferator-activated receptor structures: Ligand specificity, molecular switch and interactions with regulators
inferredcites →https://doi.org/10.1016/j.bcp.2017.07.012openalex-extracted
Study of new interactions of glitazone’s stereoisomers and the endogenous ligand 15d-PGJ2 on six different PPAR gamma proteins
inferredcites →https://doi.org/10.1016/j.bmcl.2004.11.053openalex-extracted
Identification of putative metabolites of docosahexaenoic acid as potent PPARγ agonists and antidiabetic agents
inferredcites →https://doi.org/10.1016/j.ejmech.2018.08.090openalex-extracted
Design of PPAR-γ agonist based on algal metabolites and the endogenous ligand 15-deoxy-Δ12, 14-prostaglandin J2
inferredcites →https://doi.org/10.1016/j.ejphar.2015.11.004openalex-extracted
Fatty acids, eicosanoids and PPAR gamma
inferredcites →https://doi.org/10.1016/j.envint.2023.107822openalex-extracted
Structural basis of the activation of PPARγ by the plasticizer metabolites MEHP and MINCH
inferredcites →https://doi.org/10.1016/j.febslet.2008.12.017openalex-extracted
Atomic structure of mutant PPARγ LBD complexed with 15d‐PGJ 2 : Novel modulation mechanism of PPARγ/RXRα function by covalently bound ligands
inferredcites →https://doi.org/10.1016/j.ins.2014.08.002openalex-extracted
A dynamic niching genetic algorithm strategy for docking highly flexible ligands
inferredcites →https://doi.org/10.1016/j.intimp.2014.09.009openalex-extracted
The role of nitrated fatty acids and peroxisome proliferator-activated receptor gamma in modulating inflammation
inferredcites →https://doi.org/10.1016/j.jmb.2008.10.039openalex-extracted
Structural Insight into PPARγ Activation Through Covalent Modification with Endogenous Fatty Acids
inferredcites →https://doi.org/10.1016/j.jsps.2023.101884openalex-extracted
Identification of antidiabetic inhibitors from Allophylus villosus and Mycetia sinensis by targeting α-glucosidase and PPAR-γ: In-vitro, in-vivo, and computational evidence
inferredcites →https://doi.org/10.1016/j.str.2007.07.014openalex-extracted
Partial Agonists Activate PPARγ Using a Helix 12 Independent Mechanism
inferredcites →https://doi.org/10.1016/j.tem.2012.05.001openalex-extracted
PPARs at the crossroads of lipid signaling and inflammation
inferredcites →https://doi.org/10.1016/s0049-0172(97)80009-1openalex-extracted
Dietary n-3 fatty acids and therapy for rheumatoid arthritis
inferredcites →https://doi.org/10.1021/acs.bioconjchem.5b00021openalex-extracted
Characterization of Covalent Bond Formation between PPARγ and Oxo-Fatty Acids
inferredcites →https://doi.org/10.1021/acs.jmedchem.9b01786openalex-extracted
A Selective Modulator of Peroxisome Proliferator-Activated Receptor γ with an Unprecedented Binding Mode
inferredcites →https://doi.org/10.1021/acsomega.8b00123openalex-extracted
Prediction of Accurate Binding Modes Using Combination of Classical and Accelerated Molecular Dynamics and Free-Energy Perturbation Calculations: An Application to Toxicity Studies
inferredcites →https://doi.org/10.1021/bi8016747openalex-extracted
Differential Potencies of Naturally Occurring Regioisomers of Nitrolinoleic Acid in PPARγ Activation
inferredcites →https://doi.org/10.1021/ci3003649openalex-extracted
Automation of the CHARMM General Force Field (CGenFF) II: Assignment of Bonded Parameters and Partial Atomic Charges
inferredcites →https://doi.org/10.1021/ci500020mopenalex-extracted
g_mmpbsa —A GROMACS Tool for High-Throughput MM-PBSA Calculations
inferredcites →https://doi.org/10.1021/cr2001355openalex-extracted
PPARs and Lipid Ligands in Inflammation and Metabolism
inferredcites →https://doi.org/10.1021/ja00124a002openalex-extracted
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
inferredcites →https://doi.org/10.1021/jm060663copenalex-extracted
Structural Basis for the Structure−Activity Relationships of Peroxisome Proliferator-Activated Receptor Agonists
inferredcites →https://doi.org/10.1021/jm800733hopenalex-extracted
Crystal Structure of the Peroxisome Proliferator-Activated Receptor γ (PPARγ) Ligand Binding Domain Complexed with a Novel Partial Agonist: A New Region of the Hydrophobic Pocket Could Be Exploited for Drug Design
inferredcites →https://doi.org/10.1038/emboj.2010.197openalex-extracted
The nuclear receptor PPARγ individually responds to serotonin‐ and fatty acid‐metabolites
inferredcites →https://doi.org/10.1038/ncomms8443openalex-extracted
Pharmacological repression of PPARγ promotes osteogenesis
inferredcites →https://doi.org/10.1038/nri2748openalex-extracted
Nuclear receptor transrepression pathways that regulate inflammation in macrophages and T cells
inferredcites →https://doi.org/10.1038/nsmb.1474openalex-extracted
Structural basis for the activation of PPARγ by oxidized fatty acids
inferredcites →https://doi.org/10.1038/s41467-018-07133-wopenalex-extracted
A structural mechanism for directing corepressor-selective inverse agonism of PPARγ
inferredcites →https://doi.org/10.1038/srep19940openalex-extracted
Allosteric Pathways in the PPARγ-RXRα nuclear receptor complex
inferredcites →https://doi.org/10.1038/srep34792openalex-extracted
Structural basis for PPAR partial or full activation revealed by a novel ligand binding mode
inferredcites →https://doi.org/10.1046/j.1432-1033.2003.03937.xopenalex-extracted
Binding analyses between Human PPARγ–LBD and ligands
inferredcites →https://doi.org/10.1063/1.328693openalex-extracted
Polymorphic transitions in single crystals: A new molecular dynamics method
inferredcites →https://doi.org/10.1063/1.449071openalex-extracted
The Nose–Hoover thermostat
inferredcites →https://doi.org/10.1073/pnas.181342398openalex-extracted
Electrostatics of nanosystems: Application to microtubules and the ribosome
inferredcites →https://doi.org/10.1073/pnas.241410198openalex-extracted
Structural determinants of ligand binding selectivity between the peroxisome proliferator-activated receptors
inferredcites →https://doi.org/10.1074/jbc.m111.294785openalex-extracted
Identification and Mechanism of 10-Carbon Fatty Acid as Modulating Ligand of Peroxisome Proliferator-activated Receptors
inferredcites →https://doi.org/10.1074/jbc.m802040200openalex-extracted
Structural and Biochemical Basis for the Binding Selectivity of Peroxisome Proliferator-activated Receptor γ to PGC-1α
inferredcites →https://doi.org/10.1079/pns2002173openalex-extracted
A role for the peroxisome proliferator-activated receptor α in T-cell physiology and ageing immunobiology
inferredcites →https://doi.org/10.1080/07315724.2001.10719008openalex-extracted
Types of Dietary Fat and Risk of Coronary Heart Disease: A Critical Review
inferredcites →https://doi.org/10.1080/07391102.2020.1820380openalex-extracted
Probing intermolecular interactions and binding stability of kaempferol, quercetin and resveratrol derivatives with PPAR-γ: docking, molecular dynamics and MM/GBSA approach to reveal potent PPAR- γ agonist against cancer
inferredcites →https://doi.org/10.1080/07391102.2020.1835724openalex-extracted
Computational analysis of single nucleotide polymorphisms (SNPs) in PPAR gamma associated with obesity, diabetes and cancer
inferredcites →https://doi.org/10.1080/08927029208049126openalex-extracted
Cutoff Errors in the Ewald Summation Formulae for Point Charge Systems
inferredcites →https://doi.org/10.1093/ajcn/75.1.119openalex-extracted
Unsaturated fatty acids selectively induce an inflammatory environment in human endothelial cells
inferredcites →https://doi.org/10.1093/carcin/bgg131openalex-extracted
Activation of PPAR in colon tumor cell lines by oxidized metabolites of linoleic acid, endogenous ligands for PPAR
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-extracted
The Protein Data Bank
inferredcites →https://doi.org/10.1124/mol.111.076216openalex-extracted
Mode of Peroxisome Proliferator-Activated Receptor γ Activation by Luteolin
inferredcites →https://doi.org/10.1146/annurev.med.53.082901.104018openalex-extracted
The Mechanisms of Action of PPARs
inferredcites →https://doi.org/10.1155/2010/861238openalex-extracted
Virtual Screening as a Technique for PPAR Modulator Discovery
inferredcites →https://doi.org/10.1186/s40001-023-01477-wopenalex-extracted
PPARG is a potential target of Tanshinone IIA in prostate cancer treatment: a combination study of molecular docking and dynamic simulation based on transcriptomic bioinformatics
inferredcites →https://doi.org/10.1371/journal.pone.0094836openalex-extracted
Generation and Dietary Modulation of Anti-Inflammatory Electrophilic Omega-3 Fatty Acid Derivatives
inferredcites →https://doi.org/10.1538/expanim.60.7openalex-extracted
Lipid Mediators in Life Science
inferredcites →https://doi.org/10.2147/dmso.s265399openalex-extracted
Anti-Diabetic Effect of Telmisartan Through its Partial PPARγ-Agonistic Activity
inferredcites →https://doi.org/10.22159/ijap.2022.v14s5.04openalex-extracted
STABILITY OF OMEGA-3 COMPOUNDS COMPLEX WITH PPAR-γ RECEPTOR AS AN ANTI-OBESITY USING MOLECULAR DYNAMIC SIMULATION
inferredcites →https://doi.org/10.3390/ijms19020630openalex-extracted
Molecular Modeling Study for the Design of Novel Peroxisome Proliferator-Activated Receptor Gamma Agonists Using 3D-QSAR and Molecular Docking
inferredcites →https://doi.org/10.3390/ijms231911688openalex-extracted
The Plasma Oxylipin Signature Provides a Deep Phenotyping of Metabolic Syndrome Complementary to the Clinical Criteria
inferredcites →https://doi.org/10.3390/ijms241713137openalex-extracted
Osteoarthritis: Role of Peroxisome Proliferator-Activated Receptors
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.