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Intricacies of Lipid Supply in Autophagic Membrane Expansion

https://doi.org/10.2139/ssrn.4793027
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/pro.3623openalex-extracted
Atg2: A novel phospholipid transfer protein that mediates de novo autophagosome biogenesis
inferredcites →https://doi.org/10.1007/s00232-005-7006-8openalex-extracted
Structure of Fully Hydrated Fluid Phase Lipid Bilayers with Monounsaturated Chains
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Acyl-CoA synthetases: fatty acid uptake and metabolic channeling
inferredcites →https://doi.org/10.1007/s13238-020-00793-9openalex-extracted
Lipids and membrane-associated proteins in autophagy
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Yeast acyl-CoA synthetases at the crossroads of fatty acid metabolism and regulation
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Membrane contact sites, gateways for lipid homeostasis
inferredcites →https://doi.org/10.1016/j.ceb.2020.02.012openalex-extracted
Autophagosomes are formed at a distinct cellular structure
inferredcites →https://doi.org/10.1016/j.cell.2011.06.022openalex-extracted
SNARE Proteins Are Required for Macroautophagy
inferredcites →https://doi.org/10.1016/j.cell.2012.11.001openalex-extracted
The Hairpin-type Tail-Anchored SNARE Syntaxin 17 Targets to Autophagosomes for Fusion with Endosomes/Lysosomes
inferredcites →https://doi.org/10.1016/j.cell.2012.11.028openalex-extracted
Architecture of the Atg17 Complex as a Scaffold for Autophagosome Biogenesis
inferredcites →https://doi.org/10.1016/j.cell.2013.08.044openalex-extracted
Diverse Autophagosome Membrane Sources Coalesce in Recycling Endosomes
inferredcites →https://doi.org/10.1016/j.celrep.2020.107837openalex-extracted
Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery
inferredcites →https://doi.org/10.1016/j.cub.2012.06.029openalex-extracted
Phosphatidylinositol-3-Phosphate Clearance Plays a Key Role in Autophagosome Completion
inferredcites →https://doi.org/10.1016/j.devcel.2007.12.011openalex-extracted
PpAtg30 Tags Peroxisomes for Turnover by Selective Autophagy
inferredcites →https://doi.org/10.1016/j.devcel.2009.06.013openalex-extracted
Mitochondria-Anchored Receptor Atg32 Mediates Degradation of Mitochondria via Selective Autophagy
inferredcites →https://doi.org/10.1016/j.devcel.2009.06.014openalex-extracted
Atg32 Is a Mitochondrial Protein that Confers Selectivity during Mitophagy
inferredcites →https://doi.org/10.1016/j.devcel.2024.02.002openalex-extracted
Rim aperture of yeast autophagic membranes balances cargo inclusion with vesicle maturation
inferredcites →https://doi.org/10.1016/j.freeradbiomed.2013.11.010openalex-extracted
p38MAPK-regulated induction of p62 and NBR1 after photodynamic therapy promotes autophagic clearance of ubiquitin aggregates and reduces reactive oxygen species levels by supporting Nrf2–antioxidant signaling
inferredcites →https://doi.org/10.1016/j.jmb.2016.02.004openalex-extracted
Mechanisms of Selective Autophagy
inferredcites →https://doi.org/10.1016/j.jmb.2017.01.006openalex-extracted
Sensing Membrane Curvature in Macroautophagy
inferredcites →https://doi.org/10.1016/j.semcdb.2010.03.002openalex-extracted
Physiological role of autophagy as an intracellular recycling system: With an emphasis on nutrient metabolism
inferredcites →https://doi.org/10.1038/35044114openalex-extracted
A ubiquitin-like system mediates protein lipidation
inferredcites →https://doi.org/10.1038/cddiscovery.2017.41openalex-extracted
Defective expression of ATG4D abrogates autophagy and promotes growth in human uterine fibroids
inferredcites →https://doi.org/10.1038/embor.2008.163openalex-extracted
The Atg8 and Atg12 ubiquitin‐like conjugation systems in macroautophagy
inferredcites →https://doi.org/10.1038/embor.2009.256openalex-extracted
Nix is a selective autophagy receptor for mitochondrial clearance
inferredcites →https://doi.org/10.1038/ncb1991openalex-extracted
A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation
inferredcites →https://doi.org/10.1038/ncb2422openalex-extracted
Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells
inferredcites →https://doi.org/10.1038/ncb3215openalex-extracted
CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane
inferredcites →https://doi.org/10.1038/ncomms10338openalex-extracted
The Atg1–kinase complex tethers Atg9-vesicles to initiate autophagy
inferredcites →https://doi.org/10.1038/nrm2330openalex-extracted
Membrane lipids: where they are and how they behave
inferredcites →https://doi.org/10.1038/nrm2708openalex-extracted
Dynamics and diversity in autophagy mechanisms: lessons from yeast
inferredcites →https://doi.org/10.1038/nrm3696openalex-extracted
The autophagosome: origins unknown, biogenesis complex
inferredcites →https://doi.org/10.1038/s41467-020-18153-wopenalex-extracted
Long-term autophagy is sustained by activation of CCTβ3 on lipid droplets
inferredcites →https://doi.org/10.1038/s41467-023-39641-9openalex-extracted
ATPase activity of DFCP1 controls selective autophagy
inferredcites →https://doi.org/10.1038/s41467-023-41525-xopenalex-extracted
A mechanism that ensures non-selective cytoplasm degradation by autophagy
inferredcites →https://doi.org/10.1038/s41556-018-0037-zopenalex-extracted
Cargo recognition and degradation by selective autophagy
inferredcites →https://doi.org/10.1038/s41594-019-0203-4openalex-extracted
Atg2 mediates direct lipid transfer between membranes for autophagosome formation
inferredcites →https://doi.org/10.1038/s41594-020-00518-wopenalex-extracted
Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion
inferredcites →https://doi.org/10.1073/pnas.0708818104openalex-extracted
NIX is required for programmed mitochondrial clearance during reticulocyte maturation
inferredcites →https://doi.org/10.1073/pnas.1220306110openalex-extracted
A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy
inferredcites →https://doi.org/10.1073/pnas.1705572114openalex-extracted
SNARE priming is essential for maturation of autophagosomes but not for their formation
inferredcites →https://doi.org/10.1073/pnas.1806727115openalex-extracted
The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation
inferredcites →https://doi.org/10.1073/pnas.1811874115openalex-extracted
Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex
inferredcites →https://doi.org/10.1074/jbc.m501701200openalex-extracted
Trs85 (Gsg1), a Component of the TRAPP Complexes, Is Required for the Organization of the Preautophagosomal Structure during Selective Autophagy via the Cvt Pathway
inferredcites →https://doi.org/10.1074/jbc.m803180200openalex-extracted
The Atg18-Atg2 Complex Is Recruited to Autophagic Membranes via Phosphatidylinositol 3-Phosphate and Exerts an Essential Function
inferredcites →https://doi.org/10.1080/15548627.2016.1151580openalex-extracted
Mitophagy receptor FUNDC1 regulates mitochondrial dynamics and mitophagy
inferredcites →https://doi.org/10.1080/15548627.2017.1359381openalex-extracted
Architecture of the ATG2B-WDR45 complex and an aromatic Y/HF motif crucial for complex formation
inferredcites →https://doi.org/10.1080/15548627.2019.1659608openalex-extracted
De novo phosphatidylcholine synthesis is required for autophagosome membrane formation and maintenance during autophagy
inferredcites →https://doi.org/10.1083/jcb.200803137openalex-extracted
Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum
inferredcites →https://doi.org/10.1083/jcb.200904075openalex-extracted
The conserved oligomeric Golgi complex is involved in double-membrane vesicle formation during autophagy
inferredcites →https://doi.org/10.1083/jcb.200912089openalex-extracted
An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis
inferredcites →https://doi.org/10.1083/jcb.201202061openalex-extracted
Atg9 vesicles are an important membrane source during early steps of autophagosome formation
inferredcites →https://doi.org/10.1083/jcb.201710116openalex-extracted
Atg9 establishes Atg2-dependent contact sites between the endoplasmic reticulum and phagophores
inferredcites →https://doi.org/10.1083/jcb.201811139openalex-extracted
ATG2 transports lipids to promote autophagosome biogenesis
inferredcites →https://doi.org/10.1083/jcb.201902170openalex-extracted
VPS37A directs ESCRT recruitment for phagophore closure
inferredcites →https://doi.org/10.1083/jcb.202002085openalex-extracted
Autophagosome biogenesis: From membrane growth to closure
inferredcites →https://doi.org/10.1083/jcb.202009194openalex-extracted
Transmembrane phospholipid translocation mediated by Atg9 is involved in autophagosome formation
inferredcites →https://doi.org/10.1091/mbc.e10-05-0457openalex-extracted
Membrane Delivery to the Yeast Autophagosome from the Golgi–Endosomal System
inferredcites →https://doi.org/10.1091/mbc.e13-07-0381openalex-extracted
ER exit sites are physical and functional core autophagosome biogenesis components
inferredcites →https://doi.org/10.1096/fasebj.7.6.8472893openalex-extracted
Choline phospholipids: signal transduction and carcinogenesis 1
inferredcites →https://doi.org/10.1101/cshperspect.a018358openalex-extracted
Endocytosis and Autophagy: Exploitation or Cooperation?
inferredcites →https://doi.org/10.1104/pp.17.01236openalex-extracted
Dynamics of Autophagosome Formation
inferredcites →https://doi.org/10.1111/febs.13987openalex-extracted
Phosphatidylinositol‐3‐phosphate in the regulation of autophagy membrane dynamics
inferredcites →https://doi.org/10.1111/j.1365-2443.2007.01050.xopenalex-extracted
Hierarchy of Atg proteins in pre‐autophagosomal structure organization
inferredcites →https://doi.org/10.1111/j.1365-2443.2009.01299.xopenalex-extracted
Atg17 recruits Atg9 to organize the pre‐autophagosomal structure
inferredcites →https://doi.org/10.1126/science.aan5835openalex-extracted
Here, there, and everywhere: The importance of ER membrane contact sites
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154005openalex-extracted
The Role of Atg Proteins in Autophagosome Formation
inferredcites →https://doi.org/10.1146/annurev-nutr-071813-105541openalex-extracted
Acyl-CoA Metabolism and Partitioning
inferredcites →https://doi.org/10.1177/25152564231183898openalex-extracted
The Organization and Function of the Phagophore-ER Membrane Contact Sites
inferredcites →https://doi.org/10.1194/jlr.m700378-jlr200openalex-extracted
Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome
inferredcites →https://doi.org/10.1194/jlr.s091843openalex-extracted
It takes a village: channeling fatty acid metabolism and triacylglycerol formation via protein interactomes
inferredcites →https://doi.org/10.1242/jcs.114819openalex-extracted
NBR1 acts as an autophagy receptor for peroxisomes
inferredcites →https://doi.org/10.1242/jcs.126128openalex-extracted
The LIR motif – crucial for selective autophagy
inferredcites →https://doi.org/10.15252/embj.201695189openalex-extracted
Autophagosome formation is initiated at phosphatidylinositol synthase‐enriched ER subdomains
inferredcites →https://doi.org/10.15252/embr.201643146openalex-extracted
Conserved Atg8 recognition sites mediate Atg4 association with autophagosomal membranes and Atg8 deconjugation
inferredcites →https://doi.org/10.15252/embr.201643587openalex-extracted
Structural and functional analysis of the GABARAP interaction motif (GIM)
inferredcites →https://doi.org/10.4161/auto.1.2.1840openalex-extracted
Atg9 Cycles Between Mitochondria and the Pre-Autophagosomal Structure in Yeasts
inferredcites →https://doi.org/10.4161/auto.19652openalex-extracted
Dual roles of Atg8−PE deconjugation by Atg4 in autophagy
inferredcites →https://doi.org/10.4161/auto.21485openalex-extracted
Atg36
inferredcites →https://doi.org/10.4161/auto.25684openalex-extracted
Evolutionarily conserved role and physiological relevance of a STX17/Syx17 (syntaxin 17)-containing SNARE complex in autophagosome fusion with endosomes and lysosomes
inferredcites →https://doi.org/10.4161/auto.29073openalex-extracted
Atg37 regulates the assembly of the pexophagic receptor protein complex
inferredcites →https://doi.org/10.4161/auto.29329openalex-extracted
The membrane peroxin PEX3 induces peroxisome-ubiquitination-linked pexophagy
inferredcites →https://doi.org/10.4161/auto.5.8.10274openalex-extracted
3D tomography reveals connections between the phagophore and endoplasmic reticulum
inferredcites →https://doi.org/10.4161/auto.6.1.10324openalex-extracted
Artificial induction of autophagy around polystyrene beads in nonphagocytic cells
inferredcites →https://doi.org/10.7554/elife.04135openalex-extracted
Phosphatidylinositol 3-kinase and COPII generate LC3 lipidation vesicles from the ER-Golgi intermediate compartment
inferredcites →https://doi.org/10.7554/elife.45777openalex-extracted
The autophagic membrane tether ATG2A transfers lipids between membranes
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