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Erratum: Near-optimal probabilistic RNA-seq quantification

https://doi.org/10.1038/nbt0816-888d
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Near-optimal probabilistic RNA-seq quantification

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inferred← citeshttps://doi.org/10.2139/ssrn.4168317openalex-extracted
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inferred← citeshttps://doi.org/10.1002/1878-0261.13664openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/cne.25628openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/cnr2.70401openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-031-81728-1_38openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-13-8315-1_2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-99-1529-3_8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00299-022-02960-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00299-024-03201-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10522-019-09823-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11033-021-06382-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11033-023-08722-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s12192-023-01359-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s43630-022-00311-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-817218-6.00013-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-821545-6.00003-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biopha.2023.114486openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cell.2019.07.038openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109226openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.celrep.2023.112627openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117809openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cels.2018.11.003openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cels.2023.11.006openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cmet.2022.09.004openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cpt.2025.02.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.dib.2023.109659openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.dib.2024.110294openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.isci.2024.110529openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.isci.2024.111011openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jbc.2023.104757openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jcyt.2020.01.010openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.scienta.2023.112331openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.xplc.2024.100855openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ynstr.2021.100371openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00100openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/ncomms14500openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41388-023-02680-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41398-024-02878-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41401-021-00783-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41467-020-17615-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41467-025-55826-wopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41556-023-01337-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41564-024-01668-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41586-022-05035-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41597-022-01852-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-017-17312-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-020-76881-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-020-80605-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-021-97245-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-022-11668-wopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-023-47429-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-026-40201-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s42256-021-00408-wopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s43586-022-00188-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s43588-024-00689-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s44319-026-00917-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1042/bsr20193760openalex-snapshot
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inferred← citeshttps://doi.org/10.1073/pnas.2216739120openalex-snapshot
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inferred← citeshttps://doi.org/10.1073/pnas.2301258120openalex-snapshot
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inferred← citeshttps://doi.org/10.1080/15476286.2022.2144609openalex-snapshot
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inferred← citeshttps://doi.org/10.1080/17501911.2025.2603883openalex-snapshot
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inferred← citeshttps://doi.org/10.1089/cmb.2021.0053openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bfgp/ely003openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bfgp/ely011openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bfgp/elz021openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bbab294openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bby011openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bby014openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioadv/vbad093openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioinformatics/btx753openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioinformatics/btx808openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioinformatics/btz562openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/g3journal/jkac308openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/genetics/iyac118openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/hmg/ddac196openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/hr/uhac181openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/hr/uhae118openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/ibd/izaa339openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jhered/esae049openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gky1008openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/sleep/zsae085openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/096735openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/166322openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/178848openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.01.27.921338openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.04.14.041525openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.04.22.043422openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.04.30.070201openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.05.25.445491openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.05.25.445658openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.05.28.446219openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.06.25.449944openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.10.31.466544openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.11.12.468448openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.11.22.469622openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.12.03.471115openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2021.12.08.471788openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.05.10.491392openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.10.24.22281454openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.12.16.520470openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.01.21.525007openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.04.04.535623openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.05.07.539744openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.08.17.553739openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.10.19.563197openalex-snapshot
Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples
inferred← citeshttps://doi.org/10.1101/2024.01.29.577835openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.07.04.602131openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.07.20.604417openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.10.08.617203openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.11.13.623397openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2025.04.02.646203openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2025.07.25.666789openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2025.09.30.679018openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/314344openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/808402openalex-snapshot
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inferred← citeshttps://doi.org/10.1104/pp.19.01420openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/1462-2920.14280openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.16916openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/pcmr.70001openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/tpj.70557openalex-snapshot
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inferred← citeshttps://doi.org/10.1126/sciadv.aar8028openalex-snapshot
Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral
inferred← citeshttps://doi.org/10.1126/sciadv.abi9119openalex-snapshot
Microengineered perfusable 3D-bioprinted glioblastoma model for in vivo mimicry of tumor microenvironment
inferred← citeshttps://doi.org/10.1126/scitranslmed.abo5019openalex-snapshot
Evolution of inflammation and immunity in a dengue virus 1 human infection model
inferred← citeshttps://doi.org/10.1126/scitranslmed.adf1691openalex-snapshot
Small-molecule inhibition of glycogen synthase 1 for the treatment of Pompe disease and other glycogen storage disorders
inferred← citeshttps://doi.org/10.1128/aem.01868-25openalex-snapshot
Metabolic and population profiles of active subseafloor autotrophs in young oceanic crust at deep-sea hydrothermal vents
inferred← citeshttps://doi.org/10.1128/aem.02191-19openalex-snapshot
Conserved Eukaryotic Kinase CK2 Chaperone Intrinsically Disordered Protein Interactions
inferred← citeshttps://doi.org/10.1128/jvi.00396-23openalex-snapshot
On a path toward a broad-spectrum anti-viral: inhibition of HIV-1 and coronavirus replication by SR kinase inhibitor harmine
inferred← citeshttps://doi.org/10.1128/mbio.00599-23openalex-snapshot
Tomato root-associated Sphingobium harbors genes for catabolizing toxic steroidal glycoalkaloids
inferred← citeshttps://doi.org/10.1128/mbio.01207-23openalex-snapshot
L. pneumophila resists its self-harming metabolite HGA via secreted factors and collective peroxide scavenging
inferred← citeshttps://doi.org/10.1128/mbio.02257-23openalex-snapshot
Signaling between mammalian adiponectin and a mosquito adiponectin receptor reduces Plasmodium transmission
inferred← citeshttps://doi.org/10.1128/mbio.02262-23openalex-snapshot
The two-component system WalKR provides an essential link between cell wall homeostasis and DNA replication in Staphylococcus aureus
inferred← citeshttps://doi.org/10.1128/mbio.02273-23openalex-snapshot
Commensal protists in reptiles display flexible host range and adaptation to ectothermic hosts
inferred← citeshttps://doi.org/10.1128/mbio.02476-23openalex-snapshot
Contrasting roles of MERS-CoV and SARS-CoV-2 internal proteins in pathogenesis in mice
inferred← citeshttps://doi.org/10.1128/msphere.00011-24openalex-snapshot
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae
inferred← citeshttps://doi.org/10.1128/msphere.00170-23openalex-snapshot
Growth in a biofilm promotes conjugation of a bla NDM-1 -bearing plasmid between Klebsiella pneumoniae strains
inferred← citeshttps://doi.org/10.1128/msphere.00398-23openalex-snapshot
Dual analysis of wild-type and attenuated Orf virus and host cell transcriptomes revealed novel virus-host cell interactions
inferred← citeshttps://doi.org/10.1128/spectrum.01639-23openalex-snapshot
In vivo gene expression profile of Haemophilus influenzae during human pneumonia
inferred← citeshttps://doi.org/10.1128/spectrum.02085-23openalex-snapshot
The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli
inferred← citeshttps://doi.org/10.1136/jitc-2023-007935openalex-snapshot
Identification of pan-cancer/testis genes and validation of therapeutic targeting in triple-negative breast cancer: Lin28a-based and Siglece-based vaccination induces antitumor immunity and inhibits metastasis
inferred← citeshttps://doi.org/10.1136/jmg-2023-109263openalex-snapshot
Integrating RNA-Seq into genome sequencing workflow enhances the analysis of structural variants causing neurodevelopmental disorders
inferred← citeshttps://doi.org/10.1158/0008-5472.c.6514155.v1openalex-snapshot
Data from Bimodal Gene Expression in Patients with Cancer Provides Interpretable Biomarkers for Drug Sensitivity
inferred← citeshttps://doi.org/10.1158/0008-5472.can-21-2395openalex-snapshot
Bimodal Gene Expression in Patients with Cancer Provides Interpretable Biomarkers for Drug Sensitivity
inferred← citeshttps://doi.org/10.1158/1078-0432.ccr-25-1834openalex-snapshot
Clinicogenomic Characterization of Primary Sclerosing Cholangitis–Associated Biliary Tract Cancers
inferred← citeshttps://doi.org/10.1159/000521602openalex-snapshot
The Novel Inducer of Innate Immunity HO53 Stimulates Autophagy in Human Airway Epithelial Cells
inferred← citeshttps://doi.org/10.1161/atvbaha.125.323330openalex-snapshot
Common Coronary Artery Disease Risk Variants in Endothelial Regulatory Elements Modulate Tetraspanin 14 Expression and Notch Signaling
inferred← citeshttps://doi.org/10.1161/circresaha.118.314515openalex-snapshot
Loss of SRSF3 in Cardiomyocytes Leads to Decapping of Contraction-Related mRNAs and Severe Systolic Dysfunction
inferred← citeshttps://doi.org/10.1177/2055217320978511openalex-snapshot
CD8+ T cell gene expression analysis identifies differentially expressed genes between multiple sclerosis patients and healthy controls
inferred← citeshttps://doi.org/10.1186/s12864-019-5900-1openalex-snapshot
Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data
inferred← citeshttps://doi.org/10.1186/s12864-019-6047-9openalex-snapshot
Genome-wide effects of social status on DNA methylation in the brain of a cichlid fish, Astatotilapia burtoni
inferred← citeshttps://doi.org/10.1186/s12864-025-11360-zopenalex-snapshot
A high-resolution model of gene expression during Gossypium hirsutum (cotton) fiber development
inferred← citeshttps://doi.org/10.1186/s12870-024-06014-3openalex-snapshot
Comprehensive transcriptomic analysis reveals turnip mosaic virus infection and its aphid vector Myzus persicae cause large changes in gene regulatory networks and co-transcription of alternative spliced mRNAs in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1186/s12915-021-01198-8openalex-snapshot
Wheat inositol pyrophosphate kinase TaVIH2-3B modulates cell-wall composition and drought tolerance in Arabidopsis
inferred← citeshttps://doi.org/10.1186/s12967-025-06487-2openalex-snapshot
Computational analysis of whole slide images predicts PD-L1 expression and progression-free survival in immunotherapy-treated non-small cell lung cancer patients
inferred← citeshttps://doi.org/10.1186/s12974-023-03002-6openalex-snapshot
Commonly disrupted pathways in brain and kidney in a pig model of systemic endotoxemia
inferred← citeshttps://doi.org/10.1186/s13059-021-02360-9openalex-snapshot
Role of epigenetics in unicellular to multicellular transition in Dictyostelium
inferred← citeshttps://doi.org/10.1186/s13059-022-02610-4openalex-snapshot
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite
inferred← citeshttps://doi.org/10.1186/s13072-017-0167-8openalex-snapshot
Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits
inferred← citeshttps://doi.org/10.1186/s13395-022-00294-9openalex-snapshot
Alternative splicing diversifies the skeletal muscle transcriptome during prolonged spaceflight
inferred← citeshttps://doi.org/10.1242/dev.202236openalex-snapshot
Postnatal persistence of hippocampal Cajal-Retzius cells has a crucial role in the establishment of the hippocampal circuit
inferred← citeshttps://doi.org/10.1242/dev.204357openalex-snapshot
Sox10 is required for systemic initiation of bone mineralization
inferred← citeshttps://doi.org/10.1242/jcs.252767openalex-snapshot
N1-acetylspermidine is a determinant of hair follicle stem cell fate
inferred← citeshttps://doi.org/10.12688/f1000research.17916.1openalex-snapshot
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
inferred← citeshttps://doi.org/10.1302/2046-3758.1210.bjr-2023-0062.r1openalex-snapshot
Unbiased gene expression analysis of the delayed fracture healing observed in Zucker diabetic fatty rats
inferred← citeshttps://doi.org/10.1371/journal.pbio.3002139openalex-snapshot
Obstructive sleep apnea in a mouse model is associated with tissue-specific transcriptomic changes in circadian rhythmicity and mean 24-hour gene expression
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006096openalex-snapshot
Using pseudoalignment and base quality to accurately quantify microbial community composition
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007206openalex-snapshot
PrediTALE: A novel model learned from quantitative data allows for new perspectives on TALE targeting
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008585openalex-snapshot
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009582openalex-snapshot
A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences
inferred← citeshttps://doi.org/10.1371/journal.pone.0171435openalex-snapshot
A novel RNA sequencing data analysis method for cell line authentication
inferred← citeshttps://doi.org/10.1371/journal.pone.0264540openalex-snapshot
Molecular physiology of pumiliotoxin sequestration in a poison frog
inferred← citeshttps://doi.org/10.1371/journal.ppat.1008346openalex-snapshot
Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells
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